Wall clock time and date at job start Tue Mar 31 2020 07:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.58671 * 2 1 4 4 C 1.53189 * 109.58569 * 239.71465 * 2 1 3 5 5 C 1.53045 * 109.31029 * 185.43444 * 4 2 1 6 6 H 1.08998 * 109.46308 * 301.34533 * 5 4 2 7 7 N 1.46506 * 109.44799 * 181.37783 * 5 4 2 8 8 C 1.34780 * 119.99867 * 154.93979 * 7 5 4 9 9 O 1.21348 * 119.99548 * 0.02562 * 8 7 5 10 10 C 1.49442 * 119.99955 * 180.02562 * 8 7 5 11 11 N 1.34771 * 120.00148 * 180.02562 * 10 8 7 12 12 O 1.21352 * 119.99884 * 0.02562 * 10 8 7 13 13 C 1.53045 * 109.53724 * 61.36566 * 5 4 2 14 14 C 1.53186 * 109.31377 * 298.63461 * 13 5 4 15 15 N 1.46928 * 109.70229 * 120.35389 * 2 1 3 16 16 C 1.34771 * 120.63269 * 353.46670 * 15 2 1 17 17 O 1.21279 * 120.00285 * 5.07351 * 16 15 2 18 18 C 1.50699 * 120.00323 * 185.07978 * 16 15 2 19 19 S 1.81004 * 109.47490 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99904 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99315 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00696 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99516 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46989 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47054 * 119.99930 * 24 22 20 27 27 H 1.48490 * 109.47037 * 240.00153 * 24 22 20 28 28 H 1.09006 * 109.46868 * 183.87722 * 1 2 3 29 29 H 1.09003 * 109.47223 * 303.87868 * 1 2 3 30 30 H 1.08997 * 109.47002 * 63.87909 * 1 2 3 31 31 H 1.08992 * 109.50164 * 65.48669 * 4 2 1 32 32 H 1.08999 * 109.52433 * 305.39987 * 4 2 1 33 33 H 0.96992 * 119.99900 * 334.93657 * 7 5 4 34 34 H 0.97000 * 120.00359 * 359.97438 * 11 10 8 35 35 H 0.97006 * 120.00651 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.49539 * 58.58725 * 13 5 4 37 37 H 1.08997 * 109.49534 * 178.68140 * 13 5 4 38 38 H 1.08998 * 109.58898 * 174.42433 * 14 13 5 39 39 H 1.09006 * 109.58554 * 294.84665 * 14 13 5 40 40 H 1.09000 * 109.46772 * 299.99805 * 18 16 15 41 41 H 1.09001 * 109.47276 * 59.99672 * 18 16 15 42 42 H 0.96995 * 120.00286 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5678 -0.8434 -1.1728 6 1 4.0045 0.1528 -1.1021 7 7 4.0652 -1.5099 -2.3790 8 6 5.3281 -1.2927 -2.7967 9 8 6.0532 -0.5455 -2.1735 10 6 5.8353 -1.9721 -4.0273 11 7 7.0982 -1.7555 -4.4448 12 8 5.1099 -2.7190 -4.6508 13 6 3.9603 -1.6608 0.0600 14 6 3.4685 -0.9436 1.3211 15 7 2.0253 -0.6990 1.1936 16 6 1.1722 -1.1081 2.1534 17 8 -0.0237 -0.9833 1.9951 18 6 1.7041 -1.7207 3.4233 19 16 0.3219 -2.1629 4.5051 20 6 1.2066 -2.8366 5.8720 21 1 2.2857 -2.8736 5.8514 22 6 0.5164 -3.3186 6.9755 23 7 -0.7988 -3.2730 7.0008 24 14 1.4543 -4.0321 8.4250 25 1 2.9124 -3.9679 8.1511 26 1 1.1459 -3.2485 9.6482 27 1 1.0501 -5.4464 8.6282 28 1 -0.3633 -1.0254 0.0695 29 1 -0.3634 0.5729 0.8532 30 1 -0.3633 0.4524 -0.9227 31 1 1.7639 -0.1656 -2.1371 32 1 1.6050 -1.7246 -1.2926 33 1 3.4857 -2.1074 -2.8768 34 1 7.6780 -1.1582 -3.9467 35 1 7.4274 -2.1962 -5.2438 36 1 3.5037 -2.6488 0.0019 37 1 5.0449 -1.7625 0.0989 38 1 3.6576 -1.5683 2.1941 39 1 3.9920 0.0065 1.4288 40 1 2.2782 -2.6154 3.1824 41 1 2.3473 -1.0023 3.9316 42 1 -1.2810 -3.6095 7.7722 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075143586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:06 Heat of formation + Delta-G solvation = -125.018158 kcal Electronic energy + Delta-G solvation = -25766.841969 eV Core-core repulsion = 21872.345427 eV Total energy + Delta-G solvation = -3894.496541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = -2.11 seconds Orbital eigenvalues (eV) -41.91173 -41.29678 -39.62748 -38.40971 -36.03179 -34.62314 -34.58213 -34.23022 -32.40645 -30.40188 -28.43603 -27.62605 -26.60589 -24.78379 -23.37329 -22.13867 -21.44675 -20.48665 -19.71125 -19.32666 -18.27684 -17.73575 -17.21745 -17.20950 -16.87918 -16.82494 -16.71578 -16.46836 -15.92472 -15.32350 -15.16056 -15.04663 -14.84731 -14.53853 -14.45307 -14.26377 -13.53960 -13.42890 -13.26769 -13.12952 -13.04972 -12.92150 -12.79377 -12.71029 -12.57723 -12.11216 -12.06719 -11.73343 -11.68833 -11.15559 -10.90556 -10.84726 -10.32730 -10.22369 -10.08833 -9.62510 -8.65103 -8.34563 -6.11729 0.32231 1.26893 1.40554 1.41089 1.46607 1.57430 1.64323 2.09195 2.12680 2.27911 2.82798 2.99669 3.26028 3.51073 3.59601 3.70190 3.75461 3.95186 4.00844 4.22362 4.26716 4.33594 4.36386 4.47952 4.51664 4.65762 4.78610 4.85000 4.89427 4.96006 5.05821 5.21754 5.26966 5.41661 5.42483 5.53643 5.73715 5.91655 6.20184 6.27128 6.33010 6.76446 7.01100 7.07137 7.22647 8.74744 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002475 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.110734 B =11309.019850 C =12298.495760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.149 3.851 3 H 0.094 0.906 4 C -0.129 4.129 5 C 0.150 3.850 6 H 0.099 0.901 7 N -0.686 5.686 8 C 0.508 3.492 9 O -0.537 6.537 10 C 0.514 3.486 11 N -0.801 5.801 12 O -0.553 6.553 13 C -0.139 4.139 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.534 3.466 17 O -0.545 6.545 18 C -0.128 4.128 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.423 0.577 35 H 0.422 0.578 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.518 6.198 -23.091 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.046 3.954 3 H 0.112 0.888 4 C -0.168 4.168 5 C 0.046 3.954 6 H 0.117 0.883 7 N -0.338 5.338 8 C 0.288 3.712 9 O -0.414 6.414 10 C 0.292 3.708 11 N -0.368 5.368 12 O -0.431 6.431 13 C -0.178 4.178 14 C -0.015 4.015 15 N -0.342 5.342 16 C 0.321 3.679 17 O -0.423 6.423 18 C -0.279 4.279 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.256 0.744 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.546 6.460 -23.087 28.573 hybrid contribution 1.562 -0.917 0.941 2.041 sum 17.108 5.543 -22.147 28.528 Atomic orbital electron populations 1.22031 0.93415 1.02380 1.00859 1.21326 0.95163 0.95951 0.82952 0.88843 1.22243 0.93277 1.02654 0.98632 1.21069 0.94219 0.97235 0.82914 0.88270 1.45859 1.12825 1.47317 1.27838 1.20175 0.83180 0.82248 0.85554 1.90780 1.56436 1.36990 1.57154 1.20074 0.83802 0.81655 0.85226 1.43446 1.12434 1.49285 1.31644 1.90834 1.57259 1.37641 1.57322 1.22268 1.02323 0.99589 0.93658 1.21893 0.78699 1.02070 0.98884 1.48167 1.07753 1.58166 1.20119 1.20014 0.86198 0.77469 0.84184 1.90764 1.16901 1.55433 1.79209 1.23455 1.03387 1.04058 0.97024 1.85513 1.10688 1.79698 1.16212 1.23219 0.95359 1.46683 1.03945 0.90091 1.26107 0.95979 0.95626 1.01438 1.70180 1.08086 1.45120 1.31361 0.84928 0.78630 0.77745 0.76790 1.18058 1.19949 1.19965 0.93428 0.93498 0.91282 0.87617 0.90982 0.74446 0.74485 0.74336 0.91383 0.89427 0.88996 0.88885 0.87901 0.87843 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 7.60 71.98 0.55 -2.80 16 2 C 0.15 3.03 3.49 44.97 0.16 3.18 16 3 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.13 -1.88 4.84 30.67 0.15 -1.74 16 5 C 0.15 2.11 2.42 45.02 0.11 2.22 16 6 H 0.10 1.43 7.58 -2.39 -0.02 1.41 16 7 N -0.69 -9.33 5.07 -443.72 -2.25 -11.58 16 8 C 0.51 7.84 7.85 87.27 0.69 8.53 16 9 O -0.54 -10.08 16.14 -3.24 -0.05 -10.13 16 10 C 0.51 7.33 8.16 87.27 0.71 8.05 16 11 N -0.80 -5.60 8.87 -174.51 -1.55 -7.14 16 12 O -0.55 -11.06 17.31 -3.25 -0.06 -11.12 16 13 C -0.14 -2.22 5.65 30.67 0.17 -2.04 16 14 C 0.11 1.99 6.33 86.36 0.55 2.54 16 15 N -0.61 -15.17 2.97 -795.05 -2.36 -17.53 16 16 C 0.53 19.17 7.63 87.66 0.67 19.84 16 17 O -0.55 -23.65 11.28 -3.03 -0.03 -23.68 16 18 C -0.13 -5.04 4.56 71.24 0.32 -4.71 16 19 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 20 C -0.54 -30.96 9.50 67.95 0.65 -30.32 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 24 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.05 1.50 6.74 -2.38 -0.02 1.49 16 29 H 0.05 1.50 6.77 -2.39 -0.02 1.48 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.42 5.14 8.07 -92.71 -0.75 4.39 16 34 H 0.42 1.81 8.30 -92.71 -0.77 1.04 16 35 H 0.42 1.36 8.93 -92.70 -0.83 0.53 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.80 5.96 -2.39 -0.01 1.78 16 39 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 3.70 7.48 -2.39 -0.02 3.68 16 41 H 0.10 3.74 8.11 -2.39 -0.02 3.72 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.50 360.87 -1.22 -80.72 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -1.26 Total: 15.82 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.18 Total: 3.95 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -5.87 Total: -91.82 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.14 Total: -44.93 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -79.50 -1.22 -80.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.295 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.11 seconds