Wall clock time and date at job start Tue Mar 31 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30209 * 126.79116 * 2 1 4 4 O 1.20918 * 111.64955 * 179.97438 * 3 2 1 5 5 C 1.34069 * 111.55091 * 359.75861 * 4 3 2 6 6 Cl 1.73601 * 126.79917 * 180.25426 * 5 4 3 7 7 C 1.35678 * 106.40282 * 0.38449 * 5 4 3 8 8 C 1.50701 * 128.01241 * 179.91134 * 7 5 4 9 9 C 1.50701 * 109.46780 * 269.67790 * 8 7 5 10 10 O 1.21279 * 120.00313 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00409 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.63760 * 31.85182 * 12 11 9 14 14 C 1.54337 * 110.99733 * 268.77555 * 12 11 9 15 15 N 1.47020 * 107.26210 * 219.59689 * 14 12 11 16 16 C 1.36945 * 125.64525 * 178.85184 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.71717 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.71622 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47420 * 108.70626 * 358.58837 * 15 14 12 25 25 C 1.54914 * 104.83159 * 24.35323 * 24 15 14 26 26 H 1.09002 * 111.00120 * 81.06703 * 25 24 15 27 27 O 1.42898 * 111.00461 * 204.87589 * 25 24 15 28 28 H 1.09000 * 109.47246 * 270.02792 * 1 2 3 29 29 H 1.09007 * 109.47179 * 30.02454 * 1 2 3 30 30 H 1.08995 * 109.47620 * 150.02348 * 1 2 3 31 31 H 1.08998 * 109.47247 * 149.67509 * 8 7 5 32 32 H 1.08996 * 109.47231 * 29.67321 * 8 7 5 33 33 H 0.97007 * 120.00343 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.98748 * 100.12406 * 14 12 11 35 35 H 1.09001 * 109.78230 * 338.95875 * 14 12 11 36 36 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 37 37 H 1.08999 * 110.36700 * 143.19620 * 24 15 14 38 38 H 1.08998 * 110.36896 * 265.40859 * 24 15 14 39 39 H 0.96702 * 114.00296 * 298.55030 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7269 0.0005 5 6 3.6037 -0.6054 0.0062 6 17 5.1011 -1.4836 0.0150 7 6 2.3530 -1.1315 0.0006 8 6 1.9579 -2.5858 0.0017 9 6 1.8261 -3.0714 -1.4188 10 8 2.0322 -2.3114 -2.3412 11 7 1.4782 -4.3501 -1.6643 12 6 1.3505 -4.8225 -3.0452 13 1 2.0512 -4.2998 -3.6963 14 6 -0.0953 -4.6505 -3.5571 15 7 -0.4192 -5.8404 -4.3575 16 6 -1.6180 -6.0868 -4.9719 17 1 -2.4257 -5.3753 -4.8848 18 6 -1.7948 -7.2511 -5.7067 19 7 -0.8105 -8.1185 -5.8125 20 14 -3.4303 -7.5875 -6.5443 21 1 -3.3618 -8.8868 -7.2601 22 1 -4.5075 -7.6404 -5.5236 23 1 -3.7215 -6.5026 -7.5156 24 6 0.7623 -6.7214 -4.3943 25 6 1.5687 -6.3567 -3.1229 26 1 1.1589 -6.8547 -2.2442 27 8 2.9531 -6.6703 -3.2870 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5134 31 1 1.0039 -2.7027 0.5157 32 1 2.7216 -3.1694 0.5157 33 1 1.3129 -4.9580 -0.9266 34 1 -0.1673 -3.7563 -4.1763 35 1 -0.7793 -4.5746 -2.7119 36 1 -0.9343 -8.9323 -6.3257 37 1 0.4568 -7.7672 -4.3629 38 1 1.3532 -6.5264 -5.2893 39 1 3.1286 -7.6093 -3.4374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077831129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:26 Heat of formation + Delta-G solvation = 6.276466 kcal Electronic energy + Delta-G solvation = -25861.819048 eV Core-core repulsion = 21835.139068 eV Total energy + Delta-G solvation = -4026.679980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -45.26023 -39.81194 -37.94380 -37.43895 -35.55362 -35.10227 -34.09258 -32.68212 -31.76494 -29.55467 -28.91504 -28.11916 -26.86523 -24.50067 -22.60977 -21.71300 -20.84458 -20.43938 -20.01014 -18.13821 -17.96007 -17.28391 -17.05121 -16.53258 -15.92938 -15.75738 -14.94521 -14.77319 -14.16301 -13.98065 -13.68417 -13.60486 -13.36894 -13.28042 -12.95276 -12.89737 -12.65489 -12.60116 -12.30027 -12.12844 -11.86995 -11.50943 -11.31925 -11.13452 -11.06164 -10.85645 -10.28751 -10.24718 -9.99113 -9.89865 -9.74064 -9.49092 -9.28216 -8.84554 -8.76378 -6.97482 -5.76992 -3.19683 0.81154 1.00729 1.81835 2.68870 3.21439 3.35132 3.39623 3.40391 3.42901 3.79329 4.26885 4.35964 4.56154 4.56862 4.59189 4.88305 5.10440 5.22386 5.23893 5.29609 5.36799 5.39562 5.44682 5.58717 5.61218 5.81754 5.83500 6.04445 6.12304 6.40479 6.60320 6.86097 7.25906 7.46551 7.59798 7.67637 7.84537 8.05197 8.20253 8.31959 9.08876 9.69501 10.31490 11.27234 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019816 B = 0.002878 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.684071 B = 9727.126188 C =10827.483408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 N -0.349 5.349 4 O 0.109 5.891 5 C 0.013 3.987 6 Cl 0.049 6.951 7 C -0.148 4.148 8 C -0.068 4.068 9 C 0.514 3.486 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.141 3.859 13 H 0.101 0.899 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.289 1.289 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.128 3.872 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.566 6.566 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.399 0.601 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.254 0.746 37 H 0.113 0.887 38 H 0.025 0.975 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 8.733 16.682 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.077 4.077 6 Cl 0.077 6.923 7 C -0.153 4.153 8 C -0.109 4.109 9 C 0.299 3.701 10 O -0.405 6.405 11 N -0.363 5.363 12 C 0.037 3.963 13 H 0.119 0.881 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.215 1.215 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.002 3.998 25 C 0.007 3.993 26 H 0.080 0.920 27 O -0.371 6.371 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.233 0.767 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.131 0.869 38 H 0.043 0.957 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.869 11.010 15.949 20.917 hybrid contribution -0.726 -1.926 -0.281 2.078 sum 7.143 9.083 15.669 19.469 Atomic orbital electron populations 1.20245 0.85137 1.04706 1.03511 1.23254 0.99122 0.87663 1.01241 1.73912 0.88469 1.22876 1.20274 1.84900 1.22167 1.20520 1.68133 1.24481 0.90864 0.84997 1.07393 1.98458 1.28239 1.68932 1.96650 1.20087 0.90093 0.96808 1.08321 1.19998 1.05038 0.89661 0.96186 1.20265 0.76986 0.82263 0.90592 1.90746 1.49232 1.54650 1.45911 1.45921 1.70127 1.11232 1.09056 1.22016 0.98396 0.93879 0.82043 0.88101 1.21618 0.91741 0.91684 0.94621 1.44277 1.11160 1.17908 1.59383 1.19057 0.88595 1.03286 1.24336 0.90240 1.24798 0.98237 0.97082 1.00377 1.69720 1.30582 1.11614 1.45369 0.86096 0.82560 0.77304 0.79207 1.21496 1.21059 1.21085 1.22579 0.86458 0.99524 0.91223 1.23630 0.81778 0.93693 1.00201 0.92014 1.86406 1.24617 1.30705 1.95415 0.89720 0.89975 0.89512 0.86744 0.87164 0.76679 0.94939 0.95181 0.93504 0.86922 0.95683 0.77492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.39 36.00 0.37 -0.33 16 2 C 0.05 0.55 7.32 -82.13 -0.60 -0.05 16 3 N -0.35 -4.66 12.07 33.43 0.40 -4.25 16 4 O 0.11 1.40 11.20 17.10 0.19 1.60 16 5 C 0.01 0.15 8.12 29.82 0.24 0.39 16 6 Cl 0.05 0.49 29.23 -51.86 -1.52 -1.02 16 7 C -0.15 -1.71 4.82 -104.38 -0.50 -2.21 16 8 C -0.07 -0.65 6.10 -29.03 -0.18 -0.82 16 9 C 0.51 7.14 7.82 -10.99 -0.09 7.06 16 10 O -0.53 -9.78 15.68 5.56 0.09 -9.69 16 11 N -0.71 -9.74 5.12 -52.03 -0.27 -10.01 16 12 C 0.14 2.55 3.04 -66.09 -0.20 2.35 16 13 H 0.10 2.08 7.55 -51.93 -0.39 1.68 16 14 C 0.13 2.72 7.01 -3.06 -0.02 2.70 16 15 N -0.60 -14.88 3.39 -170.07 -0.58 -15.45 16 16 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -25.82 10.09 55.49 0.56 -25.26 16 20 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.13 2.95 5.62 -2.53 -0.01 2.93 16 25 C 0.07 1.20 4.06 -24.58 -0.10 1.11 16 26 H 0.06 1.01 8.01 -51.93 -0.42 0.60 16 27 O -0.57 -9.34 13.47 -35.23 -0.47 -9.82 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.17 8.56 -40.82 -0.35 3.82 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.11 2.84 5.87 -51.93 -0.31 2.54 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.38 4.77 9.11 45.56 0.42 5.18 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -33.54 351.46 -6.63 -40.17 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.97 Total: 5.51 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -1.34 Total: 6.52 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.12 Total: -54.98 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.20 Total: -17.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -1.52 Total: -1.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.54 -6.63 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077831129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.446 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds