Wall clock time and date at job start Tue Mar 31 2020 04:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30209 * 126.79116 * 2 1 4 4 O 1.20918 * 111.64955 * 179.97438 * 3 2 1 5 5 C 1.34069 * 111.55091 * 359.75861 * 4 3 2 6 6 Cl 1.73601 * 126.79917 * 180.25426 * 5 4 3 7 7 C 1.35678 * 106.40282 * 0.38449 * 5 4 3 8 8 C 1.50701 * 128.01241 * 179.91134 * 7 5 4 9 9 C 1.50701 * 109.46780 * 269.67790 * 8 7 5 10 10 O 1.21279 * 120.00313 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00409 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.63760 * 31.85182 * 12 11 9 14 14 C 1.54337 * 110.99733 * 268.77555 * 12 11 9 15 15 N 1.47020 * 107.26210 * 219.59689 * 14 12 11 16 16 C 1.36945 * 125.64525 * 178.85184 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.71717 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.71622 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47420 * 108.70626 * 358.58837 * 15 14 12 25 25 C 1.54914 * 104.83159 * 24.35323 * 24 15 14 26 26 H 1.09002 * 111.00120 * 81.06703 * 25 24 15 27 27 O 1.42898 * 111.00461 * 204.87589 * 25 24 15 28 28 H 1.09000 * 109.47246 * 270.02792 * 1 2 3 29 29 H 1.09007 * 109.47179 * 30.02454 * 1 2 3 30 30 H 1.08995 * 109.47620 * 150.02348 * 1 2 3 31 31 H 1.08998 * 109.47247 * 149.67509 * 8 7 5 32 32 H 1.08996 * 109.47231 * 29.67321 * 8 7 5 33 33 H 0.97007 * 120.00343 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.98748 * 100.12406 * 14 12 11 35 35 H 1.09001 * 109.78230 * 338.95875 * 14 12 11 36 36 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 37 37 H 1.08999 * 110.36700 * 143.19620 * 24 15 14 38 38 H 1.08998 * 110.36896 * 265.40859 * 24 15 14 39 39 H 0.96702 * 114.00296 * 298.55030 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7269 0.0005 5 6 3.6037 -0.6054 0.0062 6 17 5.1011 -1.4836 0.0150 7 6 2.3530 -1.1315 0.0006 8 6 1.9579 -2.5858 0.0017 9 6 1.8261 -3.0714 -1.4188 10 8 2.0322 -2.3114 -2.3412 11 7 1.4782 -4.3501 -1.6643 12 6 1.3505 -4.8225 -3.0452 13 1 2.0512 -4.2998 -3.6963 14 6 -0.0953 -4.6505 -3.5571 15 7 -0.4192 -5.8404 -4.3575 16 6 -1.6180 -6.0868 -4.9719 17 1 -2.4257 -5.3753 -4.8848 18 6 -1.7948 -7.2511 -5.7067 19 7 -0.8105 -8.1185 -5.8125 20 14 -3.4303 -7.5875 -6.5443 21 1 -3.3618 -8.8868 -7.2601 22 1 -4.5075 -7.6404 -5.5236 23 1 -3.7215 -6.5026 -7.5156 24 6 0.7623 -6.7214 -4.3943 25 6 1.5687 -6.3567 -3.1229 26 1 1.1589 -6.8547 -2.2442 27 8 2.9531 -6.6703 -3.2870 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5134 31 1 1.0039 -2.7027 0.5157 32 1 2.7216 -3.1694 0.5157 33 1 1.3129 -4.9580 -0.9266 34 1 -0.1673 -3.7563 -4.1763 35 1 -0.7793 -4.5746 -2.7119 36 1 -0.9343 -8.9323 -6.3257 37 1 0.4568 -7.7672 -4.3629 38 1 1.3532 -6.5264 -5.2893 39 1 3.1286 -7.6093 -3.4374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077831129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:24 Heat of formation + Delta-G solvation = -19.789390 kcal Electronic energy + Delta-G solvation = -25862.949348 eV Core-core repulsion = 21835.139068 eV Total energy + Delta-G solvation = -4027.810280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -46.15121 -41.05883 -39.41996 -38.28220 -36.66693 -36.42767 -35.53236 -33.77312 -33.37110 -30.75443 -29.88786 -29.47982 -28.43344 -26.30595 -23.65384 -22.58060 -22.46269 -21.81426 -21.35760 -19.18586 -18.99366 -18.80324 -18.41511 -17.79704 -17.32581 -16.83668 -16.52326 -15.93704 -15.60589 -15.48890 -14.85734 -14.72548 -14.61326 -14.25040 -14.15168 -13.99676 -13.73548 -13.66808 -13.47376 -13.25037 -13.18622 -13.02624 -12.92654 -12.73970 -12.69034 -12.09588 -11.96663 -11.91536 -11.40138 -11.29362 -11.04022 -10.82483 -10.74681 -10.29518 -10.15177 -8.96137 -7.81227 -5.27322 -0.05109 0.12538 0.94720 1.48588 1.51446 1.57582 1.61642 2.13159 2.47777 2.51804 2.98393 3.09689 3.30598 3.46036 3.65503 3.69140 3.75471 3.85586 4.03280 4.11956 4.24807 4.41708 4.46669 4.57455 4.61483 4.65930 4.67441 4.74271 4.86498 4.99048 5.15050 5.38890 5.45135 5.48256 5.68886 6.22306 6.55791 6.87050 6.95834 7.05621 7.26180 7.70389 8.32132 9.20241 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019816 B = 0.002878 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.684071 B = 9727.126188 C =10827.483408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 N -0.375 5.375 4 O 0.094 5.906 5 C 0.005 3.995 6 Cl 0.062 6.938 7 C -0.156 4.156 8 C -0.059 4.059 9 C 0.514 3.486 10 O -0.579 6.579 11 N -0.699 5.699 12 C 0.157 3.843 13 H 0.072 0.928 14 C 0.132 3.868 15 N -0.619 5.619 16 C -0.245 4.245 17 H 0.082 0.918 18 C -0.060 4.060 19 N -0.946 5.946 20 Si 0.982 3.018 21 H -0.292 1.292 22 H -0.272 1.272 23 H -0.284 1.284 24 C 0.131 3.869 25 C 0.092 3.908 26 H 0.091 0.909 27 O -0.569 6.569 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.420 0.580 34 H 0.011 0.989 35 H 0.048 0.952 36 H 0.250 0.750 37 H 0.091 0.909 38 H -0.012 1.012 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 8.198 18.946 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 N -0.084 5.084 4 O 0.030 5.970 5 C -0.085 4.085 6 Cl 0.090 6.910 7 C -0.161 4.161 8 C -0.098 4.098 9 C 0.302 3.698 10 O -0.458 6.458 11 N -0.351 5.351 12 C 0.050 3.950 13 H 0.090 0.910 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.373 4.373 17 H 0.100 0.900 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.810 3.190 21 H -0.218 1.218 22 H -0.198 1.198 23 H -0.210 1.210 24 C 0.005 3.995 25 C 0.032 3.968 26 H 0.109 0.891 27 O -0.377 6.377 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.258 0.742 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.006 0.994 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.292 10.458 18.269 22.278 hybrid contribution -0.484 -1.735 -1.022 2.071 sum 6.808 8.723 17.248 20.492 Atomic orbital electron populations 1.20395 0.83239 1.04681 1.05329 1.23821 1.00436 0.87503 0.99961 1.73906 0.88820 1.23917 1.21777 1.84861 1.22232 1.21197 1.68671 1.24791 0.91780 0.84867 1.07049 1.98459 1.27524 1.68446 1.96561 1.20396 0.89791 0.97774 1.08158 1.20113 1.08151 0.88384 0.93162 1.21029 0.75335 0.81465 0.91988 1.90742 1.51259 1.55881 1.47958 1.45682 1.69904 1.11848 1.07666 1.21483 0.95674 0.93784 0.84056 0.91003 1.21689 0.94049 0.89458 0.94294 1.44536 1.10980 1.19476 1.59657 1.19413 0.89659 1.03484 1.24783 0.90043 1.25607 1.01466 0.97034 1.01202 1.69948 1.32128 1.11697 1.45778 0.85106 0.79050 0.76656 0.78215 1.21776 1.19771 1.20997 1.22406 0.86327 0.98164 0.92609 1.23268 0.81816 0.93520 0.98225 0.89133 1.86379 1.23328 1.32679 1.95287 0.86883 0.90303 0.89186 0.82812 0.84208 0.74210 0.97109 0.93392 0.94016 0.89122 0.99417 0.75340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.39 71.23 0.74 -0.50 16 2 C 0.04 0.93 7.32 43.55 0.32 1.25 16 3 N -0.37 -9.85 12.07 -49.44 -0.60 -10.45 16 4 O 0.09 2.40 11.20 71.37 0.80 3.20 16 5 C 0.01 0.12 8.12 67.23 0.55 0.67 16 6 Cl 0.06 1.15 29.23 -2.72 -0.08 1.07 16 7 C -0.16 -3.28 4.82 -19.71 -0.10 -3.38 16 8 C -0.06 -0.89 6.10 29.10 0.18 -0.71 16 9 C 0.51 13.07 7.82 87.66 0.69 13.75 16 10 O -0.58 -21.01 15.68 -3.03 -0.05 -21.06 16 11 N -0.70 -17.14 5.12 -436.90 -2.24 -19.37 16 12 C 0.16 5.48 3.04 46.18 0.14 5.62 16 13 H 0.07 2.98 7.55 -2.39 -0.02 2.97 16 14 C 0.13 5.45 7.01 86.73 0.61 6.06 16 15 N -0.62 -31.00 3.39 -691.97 -2.35 -33.35 16 16 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 19 N -0.95 -53.74 10.09 21.65 0.22 -53.52 16 20 Si 0.98 44.08 29.55 68.60 2.03 46.11 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.13 6.12 5.62 86.86 0.49 6.61 16 25 C 0.09 3.16 4.06 31.99 0.13 3.29 16 26 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 27 O -0.57 -17.74 13.47 -148.98 -2.01 -19.75 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.42 6.93 8.56 -92.70 -0.79 6.14 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.09 4.66 5.87 -2.39 -0.01 4.64 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.40 9.22 9.11 -74.06 -0.67 8.55 16 Total: -1.00 -75.40 351.46 0.45 -74.95 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.35 Total: 14.84 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 5.07 Total: 17.34 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -4.96 Total: -116.70 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.26 Total: -37.61 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -0.08 Total: 1.07 kcal Total: -75.40 0.45 -74.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077831129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.158 kcal (2) G-P(sol) polarization free energy of solvation -75.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds