Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47452 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47220 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46972 * 120.00341 * 3 2 1 7 7 C 1.38799 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00003 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00118 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99928 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.46927 * 120.62673 * 354.60593 * 13 11 10 15 15 C 1.53623 * 108.54302 * 126.37693 * 14 13 11 16 16 C 1.53030 * 109.24597 * 54.84975 * 15 14 13 17 17 C 1.53045 * 109.53928 * 298.51373 * 16 15 14 18 18 C 1.46920 * 120.63058 * 174.88721 * 13 11 10 19 19 H 1.09005 * 109.58678 * 113.79329 * 18 13 11 20 20 C 1.53003 * 109.58987 * 353.51465 * 18 13 11 21 21 N 1.46502 * 109.47030 * 73.08568 * 20 18 13 22 22 C 1.34776 * 119.99571 * 174.72880 * 21 20 18 23 23 O 1.21347 * 120.00166 * 0.02562 * 22 21 20 24 24 C 1.49451 * 119.99906 * 180.02562 * 22 21 20 25 25 N 1.34773 * 120.00305 * 179.97438 * 24 22 21 26 26 O 1.21348 * 119.99670 * 0.02562 * 24 22 21 27 27 H 0.96997 * 120.00084 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47497 * 300.00054 * 10 9 7 29 29 H 1.09002 * 109.46940 * 59.99868 * 10 9 7 30 30 H 1.09004 * 109.58599 * 246.20286 * 14 13 11 31 31 H 1.08992 * 109.59139 * 6.62600 * 14 13 11 32 32 H 1.09010 * 109.62774 * 294.86193 * 15 14 13 33 33 H 1.08998 * 109.46183 * 174.74089 * 15 14 13 34 34 H 1.09000 * 109.46619 * 178.49608 * 16 15 14 35 35 H 1.08997 * 109.45167 * 58.52727 * 16 15 14 36 36 H 1.08998 * 109.50028 * 301.41319 * 17 16 15 37 37 H 1.09000 * 109.49966 * 181.31611 * 17 16 15 38 38 H 1.08994 * 109.46927 * 193.09317 * 20 18 13 39 39 H 1.09003 * 109.46460 * 313.09301 * 20 18 13 40 40 H 0.96994 * 120.00085 * 354.73751 * 21 20 18 41 41 H 0.97004 * 119.99844 * 0.02562 * 25 24 22 42 42 H 0.96994 * 120.00395 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9873 -5.3028 -0.0036 12 8 0.7910 -5.5023 -0.0029 13 7 2.8440 -6.3432 -0.0039 14 6 4.2915 -6.1209 -0.1224 15 6 4.9921 -6.8296 1.0467 16 6 4.5821 -8.3039 1.0614 17 6 3.0697 -8.4126 1.2692 18 6 2.3478 -7.7215 0.1082 19 1 2.5488 -8.2588 -0.8187 20 6 0.8413 -7.7043 0.3745 21 7 0.1334 -7.3199 -0.8492 22 6 -1.2138 -7.3402 -0.8829 23 8 -1.8404 -7.6764 0.1004 24 6 -1.9360 -6.9486 -2.1314 25 7 -3.2831 -6.9693 -2.1654 26 8 -1.3093 -6.6129 -3.1148 27 1 -0.4850 -0.8400 -0.0004 28 1 3.1245 -3.7307 -0.8928 29 1 3.1244 -3.7322 0.8872 30 1 4.6479 -6.5302 -1.0678 31 1 4.5016 -5.0521 -0.0824 32 1 4.6999 -6.3614 1.9868 33 1 6.0723 -6.7536 0.9227 34 1 5.0979 -8.8163 1.8734 35 1 4.8521 -8.7652 0.1114 36 1 2.7958 -7.9296 2.2071 37 1 2.7817 -9.4633 1.3030 38 1 0.5160 -8.6969 0.6860 39 1 0.6200 -6.9852 1.1633 40 1 0.6343 -7.0510 -1.6351 41 1 -3.7840 -7.2381 -1.3793 42 1 -3.7518 -6.7148 -2.9755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081898052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -85.844673 kcal Electronic energy + Delta-G solvation = -26826.882590 eV Core-core repulsion = 22934.084738 eV Total energy + Delta-G solvation = -3892.797852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.89020 -39.96577 -38.03618 -37.33525 -35.14753 -33.53234 -33.05172 -32.53255 -31.78183 -29.17160 -27.27439 -25.15372 -24.79996 -23.90914 -22.30321 -21.11206 -20.23909 -19.29116 -18.58065 -18.08612 -17.14084 -16.75603 -16.32304 -15.89833 -15.53452 -15.45328 -15.14405 -14.71294 -14.53926 -14.18681 -13.92981 -13.85304 -13.78398 -13.51607 -13.24542 -12.87869 -12.61709 -12.42475 -12.35841 -12.02483 -11.83990 -11.54536 -11.43469 -11.26028 -10.98282 -10.92871 -10.89371 -10.18277 -9.82734 -9.56682 -9.53707 -9.12688 -9.01736 -8.84901 -8.44274 -8.22261 -6.67123 -6.62641 -4.00358 1.66160 2.67631 2.72138 2.88107 3.29603 3.36992 3.40313 3.50782 3.56941 4.01070 4.22549 4.31517 4.50476 4.58594 4.73126 4.81291 4.86081 4.93329 4.99007 5.17147 5.22020 5.37568 5.38163 5.44057 5.52631 5.60352 5.67297 5.71566 5.74818 5.76691 5.94516 5.97585 6.09048 6.44270 6.53182 6.56255 6.99575 7.37654 7.49265 7.90296 7.96965 8.23604 8.39473 8.49204 9.26447 10.81084 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.004633 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.067820 B = 6042.262237 C = 8573.194074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.083 2.917 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.064 0.936 9 S -0.114 6.114 10 C -0.128 4.128 11 C 0.525 3.475 12 O -0.497 6.497 13 N -0.619 5.619 14 C 0.108 3.892 15 C -0.137 4.137 16 C -0.117 4.117 17 C -0.127 4.127 18 C 0.136 3.864 19 H 0.077 0.923 20 C 0.130 3.870 21 N -0.655 5.655 22 C 0.511 3.489 23 O -0.537 6.537 24 C 0.516 3.484 25 N -0.826 5.826 26 O -0.523 6.523 27 H 0.277 0.723 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.407 0.593 41 H 0.412 0.588 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -19.853 -0.392 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.909 3.091 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.756 4.756 8 H 0.083 0.917 9 S 0.113 5.887 10 C -0.279 4.279 11 C 0.313 3.687 12 O -0.371 6.371 13 N -0.356 5.356 14 C -0.015 4.015 15 C -0.175 4.175 16 C -0.154 4.154 17 C -0.166 4.166 18 C 0.033 3.967 19 H 0.095 0.905 20 C 0.007 3.993 21 N -0.306 5.306 22 C 0.291 3.709 23 O -0.415 6.415 24 C 0.295 3.705 25 N -0.392 5.392 26 O -0.398 6.398 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.243 0.757 41 H 0.242 0.758 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.999 -18.551 -0.216 19.214 hybrid contribution 1.722 -1.061 -0.324 2.048 sum 6.721 -19.611 -0.540 20.738 Atomic orbital electron populations 1.70801 1.06709 1.30936 1.43296 1.26036 0.96307 1.02106 0.93016 0.83342 0.74784 0.74275 0.76687 1.20271 1.21135 1.21156 1.23686 0.95944 0.92256 1.63672 0.91726 1.84833 1.07967 0.98766 1.97182 1.23363 1.05042 0.94720 1.04795 1.20365 0.86571 0.86149 0.75648 1.90842 1.15092 1.84169 1.46964 1.48148 1.07023 1.05209 1.75238 1.21836 0.79383 1.01973 0.98277 1.22014 1.00306 0.95883 0.99317 1.21486 0.95261 0.96496 1.02203 1.21891 0.95525 1.00766 0.98403 1.21436 0.93270 0.82948 0.99081 0.90532 1.21538 0.88573 1.00204 0.88990 1.45488 1.05408 1.64067 1.15630 1.19715 0.83527 0.79537 0.88075 1.90710 1.66879 1.48123 1.35777 1.20243 0.83688 0.77940 0.88597 1.43486 1.06522 1.69831 1.19374 1.90798 1.66990 1.45881 1.36167 0.91033 0.89251 0.89205 0.91297 0.89139 0.91171 0.90667 0.91430 0.91698 0.90839 0.90416 0.91258 0.88836 0.75686 0.75762 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.64 13.67 55.49 0.76 -26.88 16 2 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 3 Si 1.08 25.00 29.92 -169.99 -5.09 19.91 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.61 -17.47 9.50 30.94 0.29 -17.17 16 8 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 9 S -0.11 -3.03 19.60 -107.50 -2.11 -5.14 16 10 C -0.13 -2.52 4.51 36.01 0.16 -2.36 16 11 C 0.52 9.06 7.33 -10.98 -0.08 8.98 16 12 O -0.50 -9.93 9.57 5.56 0.05 -9.88 16 13 N -0.62 -7.66 2.97 -164.96 -0.49 -8.15 16 14 C 0.11 1.04 6.38 -3.49 -0.02 1.02 16 15 C -0.14 -1.06 6.10 -26.39 -0.16 -1.22 16 16 C -0.12 -0.79 5.88 -26.69 -0.16 -0.95 16 17 C -0.13 -1.02 5.35 -26.61 -0.14 -1.16 16 18 C 0.14 1.41 2.90 -67.60 -0.20 1.22 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 20 C 0.13 1.72 4.32 -4.04 -0.02 1.70 16 21 N -0.66 -9.91 3.16 -60.73 -0.19 -10.10 16 22 C 0.51 8.45 7.61 -11.58 -0.09 8.36 16 23 O -0.54 -9.63 16.47 5.50 0.09 -9.54 16 24 C 0.52 8.10 8.16 -11.59 -0.09 8.01 16 25 N -0.83 -9.48 8.87 30.90 0.27 -9.20 16 26 O -0.52 -9.57 17.31 5.50 0.10 -9.47 16 27 H 0.28 8.89 7.12 -40.82 -0.29 8.60 16 28 H 0.09 1.66 7.72 -51.92 -0.40 1.26 16 29 H 0.09 1.67 7.91 -51.92 -0.41 1.26 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.09 1.54 6.36 -51.93 -0.33 1.21 16 40 H 0.41 6.20 7.50 -40.82 -0.31 5.90 16 41 H 0.41 4.10 8.30 -40.82 -0.34 3.76 16 42 H 0.41 3.75 8.93 -40.82 -0.36 3.38 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -37.02 357.16 -7.58 -44.60 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.76 Total: 11.09 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.60 Total: 7.38 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.35 Total: -54.33 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: 0.24 Total: -28.89 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.09 Total: 19.91 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.11 Total: -5.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.02 -7.58 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081898052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.247 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds