Wall clock time and date at job start Tue Mar 31 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30209 * 126.78834 * 2 1 4 4 O 1.20915 * 111.64777 * 180.02562 * 3 2 1 5 5 C 1.34074 * 111.55341 * 359.75747 * 4 3 2 6 6 Cl 1.73594 * 126.79879 * 180.25297 * 5 4 3 7 7 C 1.35675 * 106.40003 * 0.38551 * 5 4 3 8 8 C 1.50697 * 128.00949 * 179.90941 * 7 5 4 9 9 C 1.50700 * 109.47285 * 269.67400 * 8 7 5 10 10 O 1.21282 * 120.00081 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99907 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99807 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.78119 * 31.75958 * 12 11 9 14 14 C 1.54327 * 110.71892 * 268.52419 * 12 11 9 15 15 N 1.47014 * 107.27187 * 219.44464 * 14 12 11 16 16 C 1.36941 * 125.65028 * 178.98893 * 15 14 12 17 17 H 1.08001 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00004 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00364 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00071 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46867 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47240 * 119.99641 * 20 18 16 23 23 H 1.48505 * 109.47038 * 240.00124 * 20 18 16 24 24 C 1.47419 * 108.70437 * 358.94082 * 15 14 12 25 25 C 1.54912 * 104.83306 * 24.12578 * 24 15 14 26 26 H 1.08995 * 111.03828 * 204.90274 * 25 24 15 27 27 O 1.42903 * 110.99758 * 81.06681 * 25 24 15 28 28 H 1.09006 * 109.47059 * 269.97641 * 1 2 3 29 29 H 1.09000 * 109.47241 * 29.97175 * 1 2 3 30 30 H 1.09004 * 109.47207 * 149.97767 * 1 2 3 31 31 H 1.09002 * 109.46945 * 149.67670 * 8 7 5 32 32 H 1.08997 * 109.47355 * 29.67851 * 8 7 5 33 33 H 0.97000 * 119.99940 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.88583 * 338.86481 * 14 12 11 35 35 H 1.08998 * 109.88332 * 99.87093 * 14 12 11 36 36 H 0.96996 * 119.99935 * 179.97438 * 19 18 16 37 37 H 1.09009 * 110.36844 * 265.29198 * 24 15 14 38 38 H 1.09002 * 110.37005 * 142.96697 * 24 15 14 39 39 H 0.96700 * 114.00311 * 67.80834 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4539 0.7270 -0.0005 5 6 3.6037 -0.6054 0.0044 6 17 5.1011 -1.4834 0.0117 7 6 2.3531 -1.1314 -0.0006 8 6 1.9581 -2.5857 0.0000 9 6 1.8251 -3.0707 -1.4207 10 8 2.0313 -2.3104 -2.3428 11 7 1.4781 -4.3497 -1.6664 12 6 1.3494 -4.8212 -3.0475 13 1 2.0468 -4.2978 -3.7015 14 6 -0.1004 -4.6531 -3.5490 15 7 -0.4247 -5.8405 -4.3527 16 6 -1.6257 -6.0879 -4.9625 17 1 -2.4338 -5.3771 -4.8721 18 6 -1.8044 -7.2522 -5.6969 19 7 -0.8195 -8.1183 -5.8076 20 14 -3.4429 -7.5900 -6.5281 21 1 -4.3777 -6.4694 -6.2532 22 1 -3.2381 -7.7150 -7.9935 23 1 -4.0152 -8.8540 -5.9986 24 6 0.7573 -6.7204 -4.3946 25 6 1.5687 -6.3551 -3.1264 26 1 2.6245 -6.5927 -3.2556 27 8 1.0367 -7.0087 -1.9723 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.0044 -2.7030 0.5146 32 1 2.7220 -3.1696 0.5132 33 1 1.3135 -4.9578 -0.9289 34 1 -0.7806 -4.5829 -2.7002 35 1 -0.1789 -3.7551 -4.1618 36 1 -0.9445 -8.9321 -6.3204 37 1 1.3455 -6.5233 -5.2910 38 1 0.4530 -7.7666 -4.3619 39 1 1.1503 -7.9690 -1.9767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083859165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:31 Heat of formation + Delta-G solvation = 7.704434 kcal Electronic energy + Delta-G solvation = -25970.069500 eV Core-core repulsion = 21943.451441 eV Total energy + Delta-G solvation = -4026.618059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -45.25725 -39.79091 -37.97494 -37.45150 -35.53405 -34.76283 -33.99924 -32.67191 -31.70861 -29.53902 -28.91101 -28.24039 -26.83533 -24.50401 -22.60273 -21.70898 -20.76893 -20.36231 -19.82077 -18.13640 -17.95733 -17.44726 -16.76878 -16.67814 -15.90959 -15.47643 -14.89345 -14.75207 -14.32327 -13.95687 -13.81200 -13.58586 -13.32767 -13.07098 -12.95585 -12.87832 -12.66440 -12.61472 -12.41737 -12.09922 -11.74682 -11.37830 -11.13887 -11.10958 -10.89840 -10.66685 -10.38876 -10.25931 -10.05631 -9.88164 -9.82318 -9.41468 -9.24091 -8.76600 -8.70920 -6.88236 -5.72591 -3.12528 0.80540 1.00773 1.82750 2.70701 3.24598 3.36935 3.42501 3.44246 3.46222 3.80249 4.28416 4.44787 4.55309 4.58219 4.63653 4.98024 5.13055 5.24964 5.29848 5.30777 5.35152 5.41525 5.46273 5.46936 5.68934 5.84880 5.89187 6.01832 6.23851 6.48405 6.65500 6.89498 7.22462 7.53195 7.67746 7.74751 7.85024 8.07624 8.27958 8.38055 9.15012 9.76069 10.39024 11.32571 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002841 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.175734 B = 9853.791043 C =10688.763871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 N -0.349 5.349 4 O 0.109 5.891 5 C 0.012 3.988 6 Cl 0.047 6.953 7 C -0.146 4.146 8 C -0.068 4.068 9 C 0.510 3.490 10 O -0.535 6.535 11 N -0.705 5.705 12 C 0.142 3.858 13 H 0.101 0.899 14 C 0.132 3.868 15 N -0.596 5.596 16 C -0.216 4.216 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.926 5.926 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.126 3.874 25 C 0.068 3.932 26 H 0.058 0.942 27 O -0.561 6.561 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.409 0.591 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.252 0.748 37 H 0.022 0.978 38 H 0.115 0.885 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 8.977 16.035 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.078 4.078 6 Cl 0.076 6.924 7 C -0.151 4.151 8 C -0.109 4.109 9 C 0.295 3.705 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.037 3.963 13 H 0.119 0.881 14 C 0.005 3.995 15 N -0.323 5.323 16 C -0.345 4.345 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.001 3.999 25 C 0.007 3.993 26 H 0.076 0.924 27 O -0.367 6.367 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.244 0.756 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.133 0.867 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.287 11.229 15.384 21.190 hybrid contribution -0.496 -1.907 -0.418 2.015 sum 8.791 9.322 14.965 19.701 Atomic orbital electron populations 1.20250 0.85132 1.04717 1.03536 1.23259 0.99134 0.87660 1.01209 1.73912 0.88465 1.22869 1.20283 1.84898 1.22174 1.20513 1.68154 1.24457 0.90777 0.85004 1.07607 1.98452 1.28294 1.69006 1.96682 1.20102 0.90064 0.96850 1.08112 1.19990 1.05068 0.89543 0.96279 1.20313 0.77183 0.82388 0.90570 1.90737 1.49864 1.54688 1.45908 1.45791 1.69396 1.10974 1.09537 1.22152 0.98875 0.92807 0.82439 0.88064 1.21578 0.92332 0.91174 0.94440 1.44287 1.10967 1.18170 1.58842 1.19143 0.88658 1.03103 1.23554 0.90358 1.24761 0.98163 0.97110 1.00702 1.69729 1.30390 1.11708 1.45740 0.85965 0.82664 0.77764 0.78914 1.20514 1.21749 1.21734 1.22605 0.86640 0.99954 0.90716 1.23578 0.95935 0.91108 0.88675 0.92404 1.86221 1.83978 1.24341 1.42197 0.89708 0.89983 0.89481 0.86750 0.87208 0.75563 0.95292 0.95546 0.93767 0.96004 0.86701 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.39 36.00 0.37 -0.35 16 2 C 0.05 0.56 7.32 -82.13 -0.60 -0.05 16 3 N -0.35 -4.66 12.07 33.43 0.40 -4.26 16 4 O 0.11 1.39 11.20 17.09 0.19 1.58 16 5 C 0.01 0.14 8.12 29.82 0.24 0.38 16 6 Cl 0.05 0.46 29.23 -51.86 -1.52 -1.06 16 7 C -0.15 -1.70 4.82 -104.38 -0.50 -2.20 16 8 C -0.07 -0.67 6.10 -29.04 -0.18 -0.84 16 9 C 0.51 7.11 7.82 -10.98 -0.09 7.03 16 10 O -0.54 -9.70 15.68 5.56 0.09 -9.61 16 11 N -0.71 -9.94 5.07 -52.03 -0.26 -10.21 16 12 C 0.14 2.52 3.20 -66.10 -0.21 2.31 16 13 H 0.10 1.88 7.55 -51.93 -0.39 1.49 16 14 C 0.13 2.83 6.99 -3.07 -0.02 2.81 16 15 N -0.60 -15.02 3.39 -170.08 -0.58 -15.60 16 16 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 19 N -0.93 -26.07 10.09 55.49 0.56 -25.51 16 20 Si 0.92 21.82 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.13 2.89 5.62 -2.53 -0.01 2.87 16 25 C 0.07 1.17 4.28 -24.59 -0.11 1.07 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.56 -8.90 12.24 -35.23 -0.43 -9.33 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.41 5.00 7.59 -40.82 -0.31 4.69 16 34 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.12 2.90 5.88 -51.93 -0.31 2.60 16 39 H 0.38 4.83 9.12 45.56 0.42 5.24 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -33.24 349.73 -6.59 -39.83 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.94 Total: 5.66 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -1.35 Total: 6.45 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.12 Total: -55.58 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.15 Total: -17.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.52 Total: -1.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.24 -6.59 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083859165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.533 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds