Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47340 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47151 * 119.99684 * 3 2 1 6 6 H 1.48498 * 109.47328 * 239.99862 * 3 2 1 7 7 C 1.38812 * 120.00098 * 180.27265 * 2 1 3 8 8 H 1.07998 * 119.99520 * 195.96830 * 7 2 1 9 9 N 1.36938 * 119.99972 * 15.96542 * 7 2 1 10 10 C 1.46616 * 119.88805 * 204.85834 * 9 7 2 11 11 C 1.53902 * 107.38474 * 238.54790 * 10 9 7 12 12 C 1.53002 * 108.70238 * 299.56109 * 11 10 9 13 13 H 1.09006 * 113.42482 * 276.19325 * 12 11 10 14 14 C 1.54647 * 110.84333 * 145.03676 * 12 11 10 15 15 N 1.46622 * 85.48379 * 270.85206 * 14 12 11 16 16 C 1.34781 * 134.54641 * 153.44158 * 15 14 12 17 17 O 1.21278 * 119.99434 * 179.59664 * 16 15 14 18 18 C 1.50693 * 119.99781 * 359.59546 * 16 15 14 19 19 H 1.08997 * 109.35233 * 40.70597 * 18 16 15 20 20 C 1.54069 * 109.35859 * 280.98207 * 18 16 15 21 21 C 1.55602 * 104.29668 * 194.62323 * 20 18 16 22 22 S 1.83451 * 100.72365 * 37.92276 * 21 20 18 23 23 O 1.42095 * 111.24799 * 89.27463 * 22 21 20 24 24 O 1.42107 * 111.24635 * 228.37532 * 22 21 20 25 25 N 1.47074 * 109.35430 * 160.41535 * 18 16 15 26 26 C 1.46815 * 90.43983 * 333.15594 * 15 14 12 27 27 H 1.09001 * 111.56259 * 275.44504 * 26 15 14 28 28 C 1.45678 * 119.88664 * 25.13959 * 9 7 2 29 29 H 0.96998 * 120.00220 * 359.73284 * 1 2 3 30 30 H 1.08999 * 109.75711 * 356.96008 * 10 9 7 31 31 H 1.09004 * 109.74987 * 117.70352 * 10 9 7 32 32 H 1.08999 * 108.89985 * 180.35169 * 11 10 9 33 33 H 1.09005 * 110.79155 * 59.89701 * 11 10 9 34 34 H 1.08997 * 113.81968 * 24.45261 * 14 12 11 35 35 H 1.08997 * 113.82181 * 155.88971 * 14 12 11 36 36 H 1.09002 * 110.46824 * 313.32979 * 20 18 16 37 37 H 1.09005 * 110.46087 * 75.92282 * 20 18 16 38 38 H 1.09006 * 111.16595 * 155.78917 * 21 20 18 39 39 H 1.09000 * 111.16884 * 280.05072 * 21 20 18 40 40 H 0.96996 * 126.29466 * 329.16965 * 25 18 16 41 41 H 1.09008 * 108.71125 * 261.73432 * 28 9 7 42 42 H 1.08997 * 108.72333 * 19.75890 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2126 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0057 8 1 3.0590 -1.2213 0.2515 9 7 1.3652 -2.3636 -0.3374 10 6 1.8734 -3.6478 0.1548 11 6 2.1819 -4.5217 -1.0739 12 6 0.8899 -4.7256 -1.8678 13 1 0.2727 -5.5404 -1.4892 14 6 1.1791 -4.7751 -3.3862 15 7 1.0000 -3.3203 -3.3501 16 6 1.4568 -2.2928 -4.0932 17 8 1.1261 -1.1571 -3.8258 18 6 2.3784 -2.5553 -5.2563 19 1 2.0394 -3.4415 -5.7928 20 6 3.8078 -2.7913 -4.7320 21 6 4.7061 -2.6682 -5.9966 22 16 3.8625 -1.3012 -6.8827 23 8 4.3791 -0.0370 -6.4903 24 8 3.6476 -1.6284 -8.2488 25 7 2.3590 -1.3986 -6.1643 26 6 0.1183 -3.4464 -2.1831 27 1 -0.9091 -3.6593 -2.4784 28 6 0.1800 -2.3196 -1.1833 29 1 -0.4850 0.8400 0.0039 30 1 2.7929 -3.4887 0.7180 31 1 1.1263 -4.1192 0.7934 32 1 2.5565 -5.4876 -0.7351 33 1 2.9280 -4.0454 -1.7100 34 1 2.1966 -5.0799 -3.6308 35 1 0.4240 -5.3115 -3.9608 36 1 4.0754 -2.0304 -3.9988 37 1 3.8950 -3.7875 -4.2981 38 1 5.7265 -2.3934 -5.7293 39 1 4.6888 -3.5871 -6.5827 40 1 1.6097 -0.8022 -6.3186 41 1 -0.7048 -2.3668 -0.5482 42 1 0.1700 -1.3725 -1.7227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084837793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = -21.939267 kcal Electronic energy + Delta-G solvation = -28134.365461 eV Core-core repulsion = 24244.338756 eV Total energy + Delta-G solvation = -3890.026705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.57 seconds Orbital eigenvalues (eV) -40.72814 -38.54574 -37.13369 -36.21965 -35.90657 -35.27870 -32.20757 -31.89920 -30.22425 -29.54654 -27.16063 -26.42103 -23.94628 -23.21976 -22.59872 -21.12490 -20.00893 -19.61086 -18.20772 -17.65260 -17.43120 -16.61461 -16.08590 -15.88002 -15.68379 -15.46655 -14.88821 -14.35579 -14.19769 -13.98718 -13.70863 -13.51045 -13.27626 -13.14504 -12.91288 -12.42532 -12.37129 -12.20390 -12.08559 -12.03708 -11.90840 -11.71371 -11.52377 -11.16241 -10.79107 -10.70971 -10.63962 -10.55701 -10.26050 -10.04238 -9.86615 -9.84410 -9.58591 -8.95840 -8.32995 -8.24105 -6.64044 -5.69408 -3.11053 0.08419 2.37478 2.90941 3.11829 3.45127 3.47179 3.54202 3.59025 3.75363 4.09706 4.29081 4.47447 4.57330 4.63592 4.67677 4.91753 5.04085 5.12547 5.21822 5.30172 5.35942 5.39480 5.50159 5.55041 5.63625 5.65123 5.80421 6.03557 6.07146 6.19753 6.29935 6.43831 6.51074 6.71109 6.92404 7.00817 7.42995 7.70762 7.89819 8.13490 8.52423 8.56063 9.31691 9.95986 10.43663 11.38901 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.005382 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.963650 B = 5201.267405 C = 6572.447301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.013 3.987 3 Si 0.899 3.101 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.146 3.854 11 C -0.116 4.116 12 C -0.109 4.109 13 H 0.087 0.913 14 C 0.090 3.910 15 N -0.627 5.627 16 C 0.532 3.468 17 O -0.498 6.498 18 C 0.101 3.899 19 H 0.100 0.900 20 C -0.117 4.117 21 C -0.595 4.595 22 S 2.578 3.422 23 O -0.952 6.952 24 O -0.961 6.961 25 N -1.082 6.082 26 C 0.125 3.875 27 H 0.075 0.925 28 C 0.165 3.835 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.439 0.561 41 H 0.032 0.968 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -14.561 -10.601 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.729 3.271 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.307 5.307 10 C 0.019 3.981 11 C -0.156 4.156 12 C -0.129 4.129 13 H 0.105 0.895 14 C -0.034 4.034 15 N -0.364 5.364 16 C 0.317 3.683 17 O -0.370 6.370 18 C -0.011 4.011 19 H 0.117 0.883 20 C -0.157 4.157 21 C -0.726 4.726 22 S 2.671 3.329 23 O -0.941 6.941 24 O -0.950 6.950 25 N -0.849 5.849 26 C 0.022 3.978 27 H 0.092 0.908 28 C 0.039 3.961 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.280 0.720 41 H 0.050 0.950 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.603 -12.953 -11.300 18.080 hybrid contribution -0.029 0.481 0.262 0.548 sum 5.575 -12.473 -11.037 17.563 Atomic orbital electron populations 1.69996 1.05261 1.25552 1.53782 1.24915 0.95216 0.98198 1.00235 0.86435 0.79088 0.83674 0.77939 1.21672 1.21149 1.20799 1.19011 0.92109 0.84839 1.42731 0.91970 1.43463 1.31535 1.01314 1.54391 1.20925 0.97354 0.87402 0.92421 1.22020 0.94931 0.99482 0.99143 1.22922 0.98608 0.97626 0.93717 0.89528 1.23417 1.01217 0.81439 0.97327 1.49660 1.49613 1.05602 1.31530 1.19682 0.81749 0.84627 0.82224 1.90821 1.57572 1.20765 1.67876 1.21552 0.96962 0.90569 0.92065 0.88278 1.22624 0.89251 1.07392 0.96448 1.30842 1.11502 1.19605 1.10623 1.06134 0.75446 0.76587 0.74687 1.93654 1.78988 1.38328 1.83159 1.93622 1.84018 1.85156 1.32224 1.54930 1.32512 1.40037 1.57440 1.22789 0.92703 0.96704 0.85611 0.90753 1.20094 0.89455 0.96350 0.90232 0.93681 0.92681 0.95794 0.92822 0.91942 0.90693 0.90216 0.87452 0.86573 0.83619 0.83871 0.71971 0.95028 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 11.04 55.49 0.61 -26.36 16 2 C 0.01 0.39 4.91 -17.43 -0.09 0.30 16 3 Si 0.90 23.24 29.58 -169.99 -5.03 18.21 16 4 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.26 -7.12 9.53 -15.06 -0.14 -7.26 16 8 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 9 N -0.58 -14.14 3.00 -174.58 -0.52 -14.67 16 10 C 0.15 2.79 6.50 -3.51 -0.02 2.76 16 11 C -0.12 -1.68 5.70 -26.26 -0.15 -1.83 16 12 C -0.11 -1.44 4.36 -90.09 -0.39 -1.83 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 14 C 0.09 0.94 7.89 -3.66 -0.03 0.91 16 15 N -0.63 -9.76 3.24 -180.39 -0.58 -10.35 16 16 C 0.53 9.22 7.21 -10.99 -0.08 9.15 16 17 O -0.50 -11.46 15.52 5.56 0.09 -11.37 16 18 C 0.10 1.24 3.16 -68.21 -0.22 1.02 16 19 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 20 C -0.12 -1.19 6.09 -24.79 -0.15 -1.34 16 21 C -0.60 -4.53 7.51 38.54 0.29 -4.24 16 22 S 2.58 31.31 6.49 -107.50 -0.70 30.61 16 23 O -0.95 -15.85 18.13 -57.43 -1.04 -16.89 16 24 O -0.96 -13.68 18.14 -57.43 -1.04 -14.72 16 25 N -1.08 -14.29 6.31 -5.08 -0.03 -14.32 16 26 C 0.13 2.17 4.28 -69.59 -0.30 1.88 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 C 0.16 3.88 4.62 -5.61 -0.03 3.86 16 29 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 34 H 0.07 0.61 7.35 -51.93 -0.38 0.23 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.12 0.87 7.52 -51.93 -0.39 0.47 16 38 H 0.15 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.44 5.93 8.74 -40.30 -0.35 5.58 16 41 H 0.03 0.82 7.97 -51.92 -0.41 0.40 16 42 H 0.10 2.90 4.90 -51.93 -0.25 2.64 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -39.19 345.96 -10.29 -49.48 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.95 Total: 1.78 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.30 Total: 3.38 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.53 Total: -65.70 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.00 Total: -42.98 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.03 Total: 18.21 kcal Atomic # 16 Polarization: 31.31 SS G_CDS: -0.70 Total: 30.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.19 -10.29 -49.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084837793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.541 kcal (2) G-P(sol) polarization free energy of solvation -39.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.57 seconds