Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48501 * 109.47096 * 269.99435 * 3 2 1 5 5 H 1.48496 * 109.47480 * 29.99901 * 3 2 1 6 6 H 1.48502 * 109.47056 * 149.99986 * 3 2 1 7 7 C 1.38814 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99677 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.50452 * 130.71107 * 359.89502 * 9 7 2 11 11 H 1.08999 * 116.60480 * 359.91910 * 10 9 7 12 12 C 1.55844 * 100.96149 * 233.86549 * 10 9 7 13 13 C 1.54859 * 103.58621 * 327.25953 * 12 10 9 14 14 C 1.50238 * 130.84171 * 180.02562 * 9 7 2 15 15 H 1.09005 * 116.45450 * 359.97438 * 14 9 7 16 16 C 1.55846 * 101.05167 * 233.96365 * 14 9 7 17 17 H 1.08999 * 110.62391 * 85.70790 * 16 14 9 18 18 N 1.46499 * 110.62504 * 208.57083 * 16 14 9 19 19 C 1.34779 * 119.99818 * 274.05974 * 18 16 14 20 20 O 1.21284 * 119.99940 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99834 * 179.97438 * 19 18 16 22 22 H 1.08995 * 109.35085 * 318.27039 * 21 19 18 23 23 C 1.54063 * 109.35151 * 77.91492 * 21 19 18 24 24 C 1.55607 * 104.29376 * 165.37609 * 23 21 19 25 25 S 1.83451 * 100.72522 * 322.08422 * 24 23 21 26 26 O 1.42098 * 111.24366 * 270.72312 * 25 24 23 27 27 O 1.42099 * 111.24857 * 131.47163 * 25 24 23 28 28 N 1.47063 * 109.35508 * 198.55163 * 21 19 18 29 29 C 1.54855 * 103.44196 * 327.06070 * 16 14 9 30 30 H 0.96996 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.62689 * 208.69358 * 12 10 9 32 32 H 1.08994 * 110.62844 * 85.82199 * 12 10 9 33 33 H 1.09002 * 110.62824 * 118.41035 * 13 12 10 34 34 H 1.08997 * 110.62677 * 241.43459 * 13 12 10 35 35 H 0.96994 * 119.99922 * 94.07050 * 18 16 14 36 36 H 1.09003 * 110.47159 * 284.08120 * 23 21 19 37 37 H 1.08997 * 110.46780 * 46.67690 * 23 21 19 38 38 H 1.08998 * 111.16564 * 204.21230 * 24 23 21 39 39 H 1.09005 * 111.19966 * 79.96596 * 24 23 21 40 40 H 0.96999 * 126.30643 * 30.75764 * 28 21 19 41 41 H 1.08998 * 110.62733 * 118.49246 * 29 16 14 42 42 H 1.09004 * 110.62032 * 241.34803 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1527 -2.6677 -0.0003 11 1 -0.8134 -1.8008 0.0033 12 6 -0.2747 -3.6112 1.2341 13 6 1.0664 -4.3855 1.2340 14 6 1.8187 -3.8072 -0.0019 15 1 2.8999 -3.9456 -0.0015 16 6 1.0677 -4.3842 -1.2396 17 1 1.6275 -4.1881 -2.1540 18 7 0.8338 -5.8212 -1.0775 19 6 1.7839 -6.7041 -1.4440 20 8 2.8327 -6.3088 -1.9074 21 6 1.5436 -8.1824 -1.2768 22 1 1.0588 -8.3633 -0.3174 23 6 0.6294 -8.6826 -2.4115 24 6 0.7649 -10.2319 -2.3594 25 16 2.5476 -10.4055 -1.9627 26 8 3.3354 -10.4560 -3.1442 27 8 2.7500 -11.3135 -0.8885 28 7 2.8307 -8.8928 -1.3142 29 6 -0.2734 -3.6098 -1.2401 30 1 -0.4849 0.8400 -0.0004 31 1 -1.1136 -4.2963 1.1122 32 1 -0.3835 -3.0319 2.1509 33 1 1.6239 -4.1880 2.1497 34 1 0.8926 -5.4546 1.1121 35 1 -0.0049 -6.1373 -0.7067 36 1 -0.4029 -8.3839 -2.2291 37 1 0.9729 -8.3021 -3.3734 38 1 0.5311 -10.6800 -3.3251 39 1 0.1431 -10.6557 -1.5708 40 1 3.6867 -8.5464 -1.0174 41 1 -0.3801 -3.0273 -2.1552 42 1 -1.1126 -4.2954 -1.1227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096566002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -43.764142 kcal Electronic energy + Delta-G solvation = -27026.529629 eV Core-core repulsion = 23135.556526 eV Total energy + Delta-G solvation = -3890.973103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.39202 -38.85942 -37.33260 -36.61614 -36.12489 -34.12681 -32.42157 -32.08016 -29.51178 -29.12733 -28.23365 -26.61449 -24.25349 -23.20342 -21.47407 -20.73792 -19.89273 -19.60098 -18.72654 -18.21106 -17.57284 -17.12897 -16.50215 -16.00285 -15.71452 -15.28808 -15.06465 -14.85917 -14.37972 -14.29313 -13.97609 -13.78403 -13.59613 -12.83604 -12.51719 -12.40461 -12.29530 -12.26204 -12.23979 -11.90365 -11.82950 -11.56710 -11.12628 -10.99144 -10.98456 -10.95916 -10.88199 -10.29466 -10.19848 -10.13244 -9.92231 -9.60687 -9.47725 -9.29547 -8.98912 -8.64327 -6.97674 -5.78203 -3.16093 -0.11438 2.18254 2.55557 3.14064 3.24663 3.37063 3.42547 3.43754 3.58243 3.89043 4.05179 4.36729 4.41684 4.53702 4.79825 4.90713 4.99610 5.11648 5.22613 5.29574 5.32567 5.47830 5.71406 5.76904 5.88296 5.97786 6.02255 6.19263 6.24904 6.44516 6.50555 6.55539 6.72393 6.80676 6.87258 6.91353 7.18341 7.46952 7.58699 7.73792 8.08839 8.26562 9.05192 9.67797 10.46928 11.31659 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.002806 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.036312 B = 9974.812718 C =10266.669663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.212 4.212 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.154 0.846 12 C -0.138 4.138 13 C -0.131 4.131 14 C 0.129 3.871 15 H 0.085 0.915 16 C 0.126 3.874 17 H 0.083 0.917 18 N -0.707 5.707 19 C 0.508 3.492 20 O -0.522 6.522 21 C 0.094 3.906 22 H 0.107 0.893 23 C -0.119 4.119 24 C -0.596 4.596 25 S 2.579 3.421 26 O -0.955 6.955 27 O -0.957 6.957 28 N -1.081 6.081 29 C -0.141 4.141 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.396 0.604 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.440 0.560 41 H 0.066 0.934 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -19.464 -2.528 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.050 3.950 11 H 0.171 0.829 12 C -0.177 4.177 13 C -0.171 4.171 14 C 0.020 3.980 15 H 0.103 0.897 16 C 0.021 3.979 17 H 0.102 0.898 18 N -0.358 5.358 19 C 0.291 3.709 20 O -0.397 6.397 21 C -0.019 4.019 22 H 0.124 0.876 23 C -0.159 4.159 24 C -0.727 4.727 25 S 2.673 3.327 26 O -0.944 6.944 27 O -0.946 6.946 28 N -0.849 5.849 29 C -0.181 4.181 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.231 0.769 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.282 0.718 41 H 0.085 0.915 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.773 -19.605 -2.998 20.189 hybrid contribution -0.195 1.181 0.352 1.248 sum -3.968 -18.424 -2.645 19.031 Atomic orbital electron populations 1.69453 1.05002 1.25048 1.57676 1.24696 0.95657 0.97532 1.02765 0.86027 0.78531 0.83085 0.77597 1.21611 1.21669 1.20735 1.19065 0.90397 0.81855 1.42649 0.90306 1.46507 1.01530 0.98784 1.84130 1.23834 0.87656 0.94991 0.88546 0.82912 1.23061 0.95071 0.98202 1.01367 1.22922 0.97670 0.97470 0.99018 1.23158 0.96230 0.86124 0.92487 0.89657 1.22714 0.98333 0.76404 1.00488 0.89842 1.46268 1.18532 1.07462 1.63583 1.20193 0.84745 0.87139 0.78856 1.90751 1.25585 1.79575 1.43825 1.21657 0.85805 0.93394 1.01041 0.87554 1.22641 1.02551 0.90968 0.99705 1.30854 1.24908 1.03794 1.13136 1.06116 0.78076 0.73436 0.75068 1.93645 1.65692 1.85605 1.49426 1.93639 1.84411 1.62312 1.54263 1.54958 1.14105 1.33400 1.82449 1.23352 0.93749 0.98433 1.02519 0.93546 0.93637 0.92656 0.93028 0.93124 0.76932 0.86214 0.87896 0.83645 0.83636 0.71820 0.91543 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.48 10.47 55.49 0.58 -24.90 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.21 -5.69 10.59 -15.06 -0.16 -5.85 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.59 -14.08 2.98 -145.47 -0.43 -14.51 16 10 C 0.16 3.31 4.72 -62.49 -0.29 3.01 16 11 H 0.15 3.75 5.58 -51.93 -0.29 3.46 16 12 C -0.14 -2.46 6.43 -24.23 -0.16 -2.61 16 13 C -0.13 -2.24 6.32 -24.25 -0.15 -2.39 16 14 C 0.13 2.55 5.35 -62.82 -0.34 2.21 16 15 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 16 C 0.13 2.13 3.08 -65.43 -0.20 1.93 16 17 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 18 N -0.71 -8.51 3.63 -51.39 -0.19 -8.69 16 19 C 0.51 6.34 7.06 -10.98 -0.08 6.27 16 20 O -0.52 -8.96 16.10 5.55 0.09 -8.87 16 21 C 0.09 0.76 3.41 -68.22 -0.23 0.53 16 22 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 23 C -0.12 -0.64 6.09 -24.79 -0.15 -0.79 16 24 C -0.60 -2.48 7.51 38.55 0.29 -2.19 16 25 S 2.58 22.74 6.49 -107.50 -0.70 22.04 16 26 O -0.95 -12.33 18.13 -57.41 -1.04 -13.37 16 27 O -0.96 -11.35 18.13 -57.41 -1.04 -12.40 16 28 N -1.08 -10.34 6.31 -5.09 -0.03 -10.38 16 29 C -0.14 -2.42 6.20 -24.05 -0.15 -2.57 16 30 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.04 0.66 7.82 -51.93 -0.41 0.26 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.70 6.48 -51.93 -0.34 0.36 16 35 H 0.40 3.47 8.02 -40.82 -0.33 3.14 16 36 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.15 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.15 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.44 4.47 8.72 -40.34 -0.35 4.12 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -36.57 346.43 -10.12 -46.69 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.84 Total: 5.39 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.72 Total: -2.85 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.07 Total: -58.48 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.99 Total: -34.63 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 22.74 SS G_CDS: -0.70 Total: 22.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.57 -10.12 -46.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096566002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.926 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds