Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48499 * 109.46861 * 270.00384 * 3 2 1 5 5 H 1.48499 * 109.47033 * 29.99854 * 3 2 1 6 6 H 1.48495 * 109.47264 * 149.99813 * 3 2 1 7 7 C 1.38817 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99929 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.50236 * 130.83814 * 359.97438 * 9 7 2 11 11 H 1.08993 * 116.45962 * 359.97438 * 10 9 7 12 12 C 1.55848 * 101.04833 * 233.96804 * 10 9 7 13 13 C 1.54851 * 103.44401 * 327.06247 * 12 10 9 14 14 C 1.50236 * 130.83637 * 179.97438 * 9 7 2 15 15 H 1.08995 * 116.45929 * 0.02562 * 14 9 7 16 16 C 1.55847 * 101.05360 * 233.96610 * 14 9 7 17 17 H 1.09000 * 110.62769 * 208.57466 * 16 14 9 18 18 N 1.46504 * 110.62193 * 85.71343 * 16 14 9 19 19 C 1.34777 * 119.99451 * 155.00417 * 18 16 14 20 20 O 1.21271 * 120.00253 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99455 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.35022 * 318.26088 * 21 19 18 23 23 C 1.54070 * 109.35539 * 77.90992 * 21 19 18 24 24 C 1.55603 * 104.29567 * 165.38082 * 23 21 19 25 25 S 1.83459 * 100.72094 * 322.07774 * 24 23 21 26 26 O 1.42100 * 111.24820 * 270.72494 * 25 24 23 27 27 O 1.42103 * 111.24627 * 131.47925 * 25 24 23 28 28 N 1.47063 * 109.35360 * 198.54292 * 21 19 18 29 29 C 1.54848 * 103.44507 * 327.06781 * 16 14 9 30 30 H 0.96993 * 120.00439 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.62572 * 85.55151 * 12 10 9 32 32 H 1.09003 * 110.62577 * 208.41312 * 12 10 9 33 33 H 1.09006 * 110.62604 * 241.51147 * 13 12 10 34 34 H 1.08999 * 110.62558 * 118.49113 * 13 12 10 35 35 H 0.96995 * 119.99880 * 334.99707 * 18 16 14 36 36 H 1.09000 * 110.46349 * 284.07828 * 23 21 19 37 37 H 1.08993 * 110.46706 * 46.67124 * 23 21 19 38 38 H 1.08999 * 111.16344 * 204.21551 * 24 23 21 39 39 H 1.08995 * 111.17380 * 79.94398 * 24 23 21 40 40 H 0.97004 * 126.30442 * 30.75919 * 28 21 19 41 41 H 1.08994 * 110.63250 * 118.48805 * 29 16 14 42 42 H 1.09005 * 110.62482 * 241.35329 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8103 -1.8035 0.0010 12 6 -0.2740 -3.6104 1.2375 13 6 1.0671 -4.3846 1.2374 14 6 1.8189 -3.8071 0.0005 15 1 2.9000 -3.9455 0.0010 16 6 1.0671 -4.3848 -1.2364 17 1 0.8932 -5.4540 -1.1152 18 7 1.8186 -4.1218 -2.4661 19 6 1.6538 -4.9193 -3.5401 20 8 0.8837 -5.8547 -3.4883 21 6 2.4265 -4.6484 -4.8053 22 1 2.4413 -3.5755 -4.9968 23 6 3.8717 -5.1561 -4.6396 24 6 4.4404 -5.1758 -6.0878 25 16 2.9690 -5.7442 -7.0246 26 8 2.9271 -7.1622 -7.1070 27 8 2.7309 -4.9212 -8.1584 28 7 1.7752 -5.3355 -5.9306 29 6 -0.2740 -3.6105 -1.2365 30 1 -0.4850 0.8399 -0.0004 31 1 -0.3813 -3.0284 2.1528 32 1 -1.1147 -4.2938 1.1177 33 1 0.8932 -5.4539 1.1163 34 1 1.6248 -4.1865 2.1527 35 1 2.4347 -3.3738 -2.5074 36 1 4.4461 -4.4731 -4.0138 37 1 3.8767 -6.1597 -4.2144 38 1 5.2627 -5.8855 -6.1780 39 1 4.7472 -4.1788 -6.4039 40 1 0.8268 -5.5183 -6.0207 41 1 -0.3814 -3.0285 -2.1517 42 1 -1.1131 -4.2961 -1.1181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098426532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = -50.565390 kcal Electronic energy + Delta-G solvation = -27090.293788 eV Core-core repulsion = 23199.025761 eV Total energy + Delta-G solvation = -3891.268027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.18506 -38.85643 -37.25016 -36.54205 -36.04465 -33.99006 -32.61884 -31.99738 -29.21936 -29.14393 -28.29197 -26.56246 -24.28899 -23.19248 -21.45586 -20.16251 -19.91457 -19.72182 -18.80571 -18.05453 -17.47120 -17.09428 -16.51291 -16.02045 -15.78254 -15.09729 -14.93358 -14.77566 -14.47615 -14.03180 -13.77902 -13.68224 -13.49409 -13.02322 -12.70373 -12.33551 -12.19382 -12.16807 -12.12783 -11.91244 -11.79778 -11.35641 -11.21369 -11.01846 -10.97619 -10.89031 -10.61568 -10.44168 -10.17753 -10.11740 -9.99419 -9.64695 -9.31675 -9.21693 -9.05452 -8.61868 -7.04437 -5.83274 -3.22914 -0.02450 2.27490 2.66439 3.28730 3.29429 3.33591 3.34822 3.37694 3.69577 3.99596 4.16466 4.32397 4.50738 4.66018 4.92029 5.02410 5.06320 5.09863 5.26218 5.36829 5.41972 5.54858 5.60538 5.79357 5.96543 6.00661 6.06012 6.20322 6.32970 6.40039 6.50956 6.64767 6.74294 6.85984 6.90300 6.99229 7.22965 7.38032 7.70494 7.79408 8.06707 8.38305 8.98054 9.61613 10.42203 11.25759 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.003517 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.167955 B = 7960.025872 C = 9001.120631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.156 3.844 11 H 0.152 0.848 12 C -0.140 4.140 13 C -0.129 4.129 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.127 3.873 17 H 0.081 0.919 18 N -0.700 5.700 19 C 0.510 3.490 20 O -0.534 6.534 21 C 0.093 3.907 22 H 0.108 0.892 23 C -0.118 4.118 24 C -0.596 4.596 25 S 2.580 3.420 26 O -0.957 6.957 27 O -0.957 6.957 28 N -1.081 6.081 29 C -0.143 4.143 30 H 0.255 0.745 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.405 0.595 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.439 0.561 41 H 0.059 0.941 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 -8.850 -7.256 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.049 3.951 11 H 0.168 0.832 12 C -0.179 4.179 13 C -0.169 4.169 14 C 0.018 3.982 15 H 0.106 0.894 16 C 0.020 3.980 17 H 0.099 0.901 18 N -0.350 5.350 19 C 0.293 3.707 20 O -0.411 6.411 21 C -0.020 4.020 22 H 0.126 0.874 23 C -0.158 4.158 24 C -0.726 4.726 25 S 2.674 3.326 26 O -0.946 6.946 27 O -0.947 6.947 28 N -0.849 5.849 29 C -0.184 4.184 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.239 0.761 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.281 0.719 41 H 0.078 0.922 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.239 -9.592 -8.121 14.504 hybrid contribution 0.590 1.458 0.612 1.688 sum 7.829 -8.134 -7.509 13.559 Atomic orbital electron populations 1.69481 1.05042 1.25119 1.56884 1.24711 0.95575 0.97520 1.02600 0.86081 0.78512 0.83359 0.77523 1.21669 1.21678 1.20792 1.18980 0.90171 0.81860 1.43599 0.90376 1.46516 1.01592 0.98561 1.84426 1.23696 0.87364 0.95173 0.88829 0.83162 1.23072 0.95262 0.98297 1.01287 1.22889 0.97736 0.97648 0.98583 1.23140 0.96014 0.86936 0.92150 0.89367 1.22704 0.92907 0.98771 0.83574 0.90068 1.46031 1.44849 1.31240 1.12841 1.20176 0.83110 0.82997 0.84418 1.90701 1.37299 1.30273 1.82805 1.21661 0.92411 0.99437 0.88447 0.87389 1.22634 0.92011 1.05856 0.95284 1.30847 1.18526 1.13916 1.09332 1.06089 0.77535 0.74922 0.74093 1.93635 1.85288 1.29636 1.86020 1.93640 1.83273 1.69654 1.48094 1.54930 1.21241 1.75425 1.33289 1.23461 0.94894 0.98400 1.01625 0.93469 0.92620 0.93300 0.92980 0.92401 0.76063 0.86110 0.88004 0.83684 0.83588 0.71935 0.92189 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.65 10.48 55.49 0.58 -24.07 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.22 -5.34 10.59 -15.06 -0.16 -5.50 16 8 H 0.08 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.59 -12.98 2.98 -145.82 -0.44 -13.42 16 10 C 0.16 3.35 4.69 -62.79 -0.29 3.05 16 11 H 0.15 3.75 5.57 -51.93 -0.29 3.46 16 12 C -0.14 -2.62 6.44 -24.23 -0.16 -2.77 16 13 C -0.13 -2.18 6.44 -24.24 -0.16 -2.33 16 14 C 0.13 2.23 5.06 -62.80 -0.32 1.91 16 15 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.13 2.13 2.80 -65.43 -0.18 1.95 16 17 H 0.08 1.38 7.22 -51.93 -0.38 1.01 16 18 N -0.70 -10.14 5.08 -51.40 -0.26 -10.40 16 19 C 0.51 7.16 7.06 -10.98 -0.08 7.08 16 20 O -0.53 -9.41 16.02 5.56 0.09 -9.32 16 21 C 0.09 0.93 3.41 -68.22 -0.23 0.70 16 22 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.12 -0.82 6.09 -24.79 -0.15 -0.97 16 24 C -0.60 -3.33 7.51 38.54 0.29 -3.04 16 25 S 2.58 25.57 6.50 -107.50 -0.70 24.87 16 26 O -0.96 -12.99 18.13 -57.41 -1.04 -14.03 16 27 O -0.96 -12.53 18.14 -57.41 -1.04 -13.57 16 28 N -1.08 -11.73 6.31 -5.08 -0.03 -11.76 16 29 C -0.14 -2.73 6.23 -24.23 -0.15 -2.88 16 30 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 33 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 5.42 8.66 -40.82 -0.35 5.07 16 36 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.44 4.93 8.72 -40.34 -0.35 4.58 16 41 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 42 H 0.05 0.98 7.83 -51.93 -0.41 0.57 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -34.52 349.19 -10.21 -44.73 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.93 Total: 9.44 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.69 Total: -3.10 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.15 Total: -59.65 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.99 Total: -36.91 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 25.57 SS G_CDS: -0.70 Total: 24.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.52 -10.21 -44.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098426532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.833 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds