Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48499 * 109.46861 * 270.00384 * 3 2 1 5 5 H 1.48499 * 109.47033 * 29.99854 * 3 2 1 6 6 H 1.48495 * 109.47264 * 149.99813 * 3 2 1 7 7 C 1.38817 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99929 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.50236 * 130.83814 * 359.97438 * 9 7 2 11 11 H 1.08993 * 116.45962 * 359.97438 * 10 9 7 12 12 C 1.55848 * 101.04833 * 233.96804 * 10 9 7 13 13 C 1.54851 * 103.44401 * 327.06247 * 12 10 9 14 14 C 1.50236 * 130.83637 * 179.97438 * 9 7 2 15 15 H 1.08995 * 116.45929 * 0.02562 * 14 9 7 16 16 C 1.55847 * 101.05360 * 233.96610 * 14 9 7 17 17 H 1.09000 * 110.62769 * 208.57466 * 16 14 9 18 18 N 1.46504 * 110.62193 * 85.71343 * 16 14 9 19 19 C 1.34777 * 119.99451 * 155.00417 * 18 16 14 20 20 O 1.21271 * 120.00253 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99455 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.35022 * 318.26088 * 21 19 18 23 23 C 1.54070 * 109.35539 * 77.90992 * 21 19 18 24 24 C 1.55603 * 104.29567 * 165.38082 * 23 21 19 25 25 S 1.83459 * 100.72094 * 322.07774 * 24 23 21 26 26 O 1.42100 * 111.24820 * 270.72494 * 25 24 23 27 27 O 1.42103 * 111.24627 * 131.47925 * 25 24 23 28 28 N 1.47063 * 109.35360 * 198.54292 * 21 19 18 29 29 C 1.54848 * 103.44507 * 327.06781 * 16 14 9 30 30 H 0.96993 * 120.00439 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.62572 * 85.55151 * 12 10 9 32 32 H 1.09003 * 110.62577 * 208.41312 * 12 10 9 33 33 H 1.09006 * 110.62604 * 241.51147 * 13 12 10 34 34 H 1.08999 * 110.62558 * 118.49113 * 13 12 10 35 35 H 0.96995 * 119.99880 * 334.99707 * 18 16 14 36 36 H 1.09000 * 110.46349 * 284.07828 * 23 21 19 37 37 H 1.08993 * 110.46706 * 46.67124 * 23 21 19 38 38 H 1.08999 * 111.16344 * 204.21551 * 24 23 21 39 39 H 1.08995 * 111.17380 * 79.94398 * 24 23 21 40 40 H 0.97004 * 126.30442 * 30.75919 * 28 21 19 41 41 H 1.08994 * 110.63250 * 118.48805 * 29 16 14 42 42 H 1.09005 * 110.62482 * 241.35329 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8103 -1.8035 0.0010 12 6 -0.2740 -3.6104 1.2375 13 6 1.0671 -4.3846 1.2374 14 6 1.8189 -3.8071 0.0005 15 1 2.9000 -3.9455 0.0010 16 6 1.0671 -4.3848 -1.2364 17 1 0.8932 -5.4540 -1.1152 18 7 1.8186 -4.1218 -2.4661 19 6 1.6538 -4.9193 -3.5401 20 8 0.8837 -5.8547 -3.4883 21 6 2.4265 -4.6484 -4.8053 22 1 2.4413 -3.5755 -4.9968 23 6 3.8717 -5.1561 -4.6396 24 6 4.4404 -5.1758 -6.0878 25 16 2.9690 -5.7442 -7.0246 26 8 2.9271 -7.1622 -7.1070 27 8 2.7309 -4.9212 -8.1584 28 7 1.7752 -5.3355 -5.9306 29 6 -0.2740 -3.6105 -1.2365 30 1 -0.4850 0.8399 -0.0004 31 1 -0.3813 -3.0284 2.1528 32 1 -1.1147 -4.2938 1.1177 33 1 0.8932 -5.4539 1.1163 34 1 1.6248 -4.1865 2.1527 35 1 2.4347 -3.3738 -2.5074 36 1 4.4461 -4.4731 -4.0138 37 1 3.8767 -6.1597 -4.2144 38 1 5.2627 -5.8855 -6.1780 39 1 4.7472 -4.1788 -6.4039 40 1 0.8268 -5.5183 -6.0207 41 1 -0.3814 -3.0285 -2.1517 42 1 -1.1131 -4.2961 -1.1181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098426532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = -78.975684 kcal Electronic energy + Delta-G solvation = -27091.525751 eV Core-core repulsion = 23199.025761 eV Total energy + Delta-G solvation = -3892.499990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.41854 -40.17927 -38.12604 -37.42750 -36.91624 -35.31232 -34.37462 -32.67078 -30.93738 -30.54396 -29.66998 -27.54614 -26.03795 -23.96109 -22.68467 -21.51146 -21.26989 -20.57416 -20.25822 -19.01078 -18.80906 -18.25010 -17.50026 -17.16973 -16.73154 -16.64248 -16.02577 -15.93992 -15.58478 -15.51694 -15.03896 -14.51997 -14.39775 -14.19884 -13.72404 -13.63860 -13.45706 -13.24933 -13.07885 -12.96416 -12.86943 -12.83607 -12.71861 -12.67137 -12.46871 -12.06921 -11.93528 -11.85446 -11.68114 -11.53019 -11.24564 -10.96368 -10.90452 -10.77772 -10.38388 -9.93391 -8.83469 -7.71718 -5.11355 -0.73595 1.44334 1.53155 1.54794 1.62055 1.66706 2.25217 2.54407 2.64282 2.97950 3.38932 3.42465 3.47925 3.50540 3.75542 3.94572 4.04513 4.12450 4.27821 4.31572 4.39567 4.48564 4.52846 4.65044 4.66653 4.73134 4.83937 4.87035 4.91524 4.93880 5.12982 5.20152 5.21511 5.41869 5.56110 5.62861 5.73395 5.93638 6.00555 6.29146 6.66058 7.09519 7.27115 7.77521 8.62886 9.35949 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.003517 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.167955 B = 7960.025872 C = 9001.120631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.308 1.308 6 H -0.270 1.270 7 C -0.210 4.210 8 H 0.092 0.908 9 N -0.609 5.609 10 C 0.141 3.859 11 H 0.111 0.889 12 C -0.135 4.135 13 C -0.122 4.122 14 C 0.131 3.869 15 H 0.112 0.888 16 C 0.139 3.861 17 H 0.086 0.914 18 N -0.696 5.696 19 C 0.511 3.489 20 O -0.573 6.573 21 C 0.090 3.910 22 H 0.131 0.869 23 C -0.119 4.119 24 C -0.551 4.551 25 S 2.571 3.429 26 O -1.003 7.003 27 O -0.998 6.998 28 N -1.092 6.092 29 C -0.135 4.135 30 H 0.243 0.757 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.412 0.588 36 H 0.156 0.844 37 H 0.100 0.900 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.433 0.567 41 H 0.036 0.964 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -9.533 -7.050 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.235 1.235 6 H -0.194 1.194 7 C -0.339 4.339 8 H 0.109 0.891 9 N -0.330 5.330 10 C 0.034 3.966 11 H 0.129 0.871 12 C -0.174 4.174 13 C -0.161 4.161 14 C 0.024 3.976 15 H 0.130 0.870 16 C 0.032 3.968 17 H 0.104 0.896 18 N -0.346 5.346 19 C 0.296 3.704 20 O -0.453 6.453 21 C -0.022 4.022 22 H 0.149 0.851 23 C -0.159 4.159 24 C -0.686 4.686 25 S 2.671 3.329 26 O -0.992 6.992 27 O -0.987 6.987 28 N -0.857 5.857 29 C -0.175 4.175 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.173 0.827 37 H 0.119 0.881 38 H 0.195 0.805 39 H 0.196 0.804 40 H 0.273 0.727 41 H 0.055 0.945 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.509 -10.315 -7.946 16.732 hybrid contribution -0.427 1.642 0.601 1.800 sum 10.082 -8.673 -7.345 15.192 Atomic orbital electron populations 1.69749 1.06335 1.24647 1.59242 1.25411 0.96181 1.00346 1.04065 0.85162 0.77589 0.79882 0.77157 1.21622 1.23510 1.19444 1.19382 0.90913 0.82719 1.40861 0.89070 1.46697 1.01994 0.99784 1.84510 1.23507 0.87012 0.94911 0.91165 0.87124 1.22977 0.97435 0.98061 0.98924 1.22858 0.96122 0.98884 0.98263 1.23353 0.97427 0.84252 0.92564 0.87034 1.22430 0.91619 0.98367 0.84403 0.89557 1.45936 1.44667 1.31630 1.12405 1.20829 0.82561 0.81898 0.85160 1.90687 1.39081 1.31950 1.83538 1.21953 0.93529 1.00933 0.85737 0.85109 1.22820 0.89945 1.06678 0.96431 1.30669 1.15394 1.16254 1.06246 1.06160 0.78957 0.73732 0.74065 1.93575 1.86529 1.32316 1.86809 1.93586 1.84696 1.69867 1.50568 1.55015 1.21267 1.75559 1.33847 1.23315 0.96900 0.97960 0.99330 0.94735 0.94587 0.91502 0.90167 0.92196 0.75165 0.82656 0.88146 0.80470 0.80392 0.72723 0.94550 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.69 10.48 21.65 0.23 -52.47 16 2 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.97 41.94 29.55 68.60 2.03 43.97 16 4 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.31 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.21 -10.02 10.59 84.04 0.89 -9.13 16 8 H 0.09 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.61 -26.12 2.98 -615.25 -1.84 -27.95 16 10 C 0.14 6.10 4.69 46.23 0.22 6.31 16 11 H 0.11 5.79 5.57 -2.39 -0.01 5.78 16 12 C -0.13 -4.94 6.44 32.21 0.21 -4.73 16 13 C -0.12 -3.78 6.44 32.21 0.21 -3.57 16 14 C 0.13 4.26 5.06 46.23 0.23 4.49 16 15 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 16 C 0.14 4.37 2.80 46.61 0.13 4.50 16 17 H 0.09 2.71 7.22 -2.39 -0.02 2.69 16 18 N -0.70 -18.47 5.08 -434.91 -2.21 -20.68 16 19 C 0.51 13.34 7.06 87.66 0.62 13.96 16 20 O -0.57 -19.69 16.02 -3.00 -0.05 -19.74 16 21 C 0.09 1.57 3.41 44.50 0.15 1.72 16 22 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 23 C -0.12 -1.10 6.09 31.85 0.19 -0.91 16 24 C -0.55 -3.47 7.51 72.88 0.55 -2.93 16 25 S 2.57 48.00 6.50 -56.49 -0.37 47.63 16 26 O -1.00 -27.21 18.13 -127.77 -2.32 -29.53 16 27 O -1.00 -25.78 18.14 -127.77 -2.32 -28.09 16 28 N -1.09 -22.82 6.31 -169.99 -1.07 -23.90 16 29 C -0.13 -5.09 6.23 32.21 0.20 -4.89 16 30 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.17 7.82 -2.39 -0.02 2.15 16 33 H 0.08 2.08 7.82 -2.38 -0.02 2.06 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 9.75 8.66 -92.71 -0.80 8.95 16 36 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.10 1.05 8.10 -2.39 -0.02 1.04 16 38 H 0.18 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.18 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.43 10.00 8.72 -93.01 -0.81 9.19 16 41 H 0.04 1.51 7.98 -2.39 -0.02 1.49 16 42 H 0.06 2.17 7.83 -2.38 -0.02 2.15 16 Total: -1.00 -78.53 349.19 -4.40 -82.93 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.55 Total: 25.97 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 4.07 Total: 1.84 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -4.89 Total: -125.00 kcal Atomic # 8 Polarization: -72.67 SS G_CDS: -4.68 Total: -77.36 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.37 Total: 47.63 kcal Total: -78.53 -4.40 -82.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098426532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.955 kcal (2) G-P(sol) polarization free energy of solvation -78.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds