Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99602 * 2 1 4 4 H 1.48506 * 109.47047 * 240.00392 * 3 2 1 5 5 H 1.48501 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47036 * 120.00551 * 3 2 1 7 7 C 1.38810 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00257 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.84086 * 0.02562 * 9 7 2 11 11 H 1.09002 * 115.85732 * 359.62417 * 10 9 7 12 12 C 1.55848 * 101.05163 * 233.94750 * 10 9 7 13 13 C 1.54853 * 103.44532 * 327.06431 * 12 10 9 14 14 C 1.50240 * 130.83595 * 179.97438 * 9 7 2 15 15 H 1.08997 * 115.85750 * 0.37302 * 14 9 7 16 16 C 1.55847 * 101.05077 * 233.98515 * 14 9 7 17 17 H 1.08997 * 110.63054 * 208.57623 * 16 14 9 18 18 N 1.46503 * 110.62421 * 85.71092 * 16 14 9 19 19 C 1.34773 * 119.99837 * 155.00157 * 18 16 14 20 20 O 1.21283 * 120.00022 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00164 * 179.97438 * 19 18 16 22 22 H 1.09003 * 108.58098 * 43.45741 * 21 19 18 23 23 C 1.53200 * 108.65101 * 285.62827 * 21 19 18 24 24 C 1.55559 * 106.23954 * 211.33722 * 23 21 19 25 25 S 1.83896 * 99.64165 * 36.98850 * 24 23 21 26 26 O 1.42103 * 111.46611 * 215.90997 * 25 24 23 27 27 O 1.42100 * 111.47211 * 75.85765 * 25 24 23 28 28 N 1.46454 * 108.65151 * 161.45162 * 21 19 18 29 29 C 1.55846 * 101.04996 * 125.29791 * 10 9 7 30 30 H 0.96994 * 120.00352 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.62572 * 85.55135 * 12 10 9 32 32 H 1.09000 * 110.62759 * 208.57017 * 12 10 9 33 33 H 1.08997 * 110.62526 * 241.50943 * 13 12 10 34 34 H 1.09000 * 110.76127 * 118.55016 * 13 12 10 35 35 H 0.96993 * 120.00322 * 334.99666 * 18 16 14 36 36 H 1.09007 * 110.09680 * 330.53017 * 23 21 19 37 37 H 1.08992 * 110.10300 * 92.14245 * 23 21 19 38 38 H 1.08991 * 111.37116 * 279.38153 * 24 23 21 39 39 H 1.09010 * 111.41121 * 154.60598 * 24 23 21 40 40 H 0.96996 * 126.08179 * 302.79999 * 28 21 19 41 41 H 1.09006 * 110.62360 * 151.42720 * 29 10 9 42 42 H 1.09001 * 110.62907 * 274.44846 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8013 -1.7966 0.0059 12 6 -0.2740 -3.6109 1.2361 13 6 1.0672 -4.3851 1.2358 14 6 1.8189 -3.8071 -0.0016 15 1 2.9014 -3.9342 0.0039 16 6 1.0665 -4.3840 -1.2384 17 1 0.8926 -5.4532 -1.1179 18 7 1.8174 -4.1203 -2.4684 19 6 1.6521 -4.9171 -3.5428 20 8 0.8821 -5.8526 -3.4912 21 6 2.4241 -4.6455 -4.8082 22 1 3.4553 -4.4126 -4.5427 23 6 1.8129 -3.4243 -5.5024 24 6 2.0190 -3.6430 -7.0287 25 16 1.7563 -5.4610 -7.1175 26 8 2.6097 -6.0633 -8.0810 27 8 0.3780 -5.7927 -7.0201 28 7 2.4148 -5.8567 -5.6315 29 6 -0.2770 -3.5948 -1.2489 30 1 -0.4850 0.8400 0.0004 31 1 -0.3813 -3.0291 2.1516 32 1 -1.1130 -4.2961 1.1148 33 1 0.8933 -5.4542 1.1143 34 1 1.6263 -4.1896 2.1508 35 1 2.4335 -3.3723 -2.5096 36 1 0.7492 -3.3568 -5.2739 37 1 2.3238 -2.5164 -5.1818 38 1 3.0290 -3.3722 -7.3360 39 1 1.2719 -3.1048 -7.6123 40 1 2.7341 -6.7324 -5.3630 41 1 -1.1157 -4.2816 -1.1344 42 1 -0.3865 -3.0013 -2.1566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098426533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -76.838041 kcal Electronic energy + Delta-G solvation = -27297.645980 eV Core-core repulsion = 23405.238686 eV Total energy + Delta-G solvation = -3892.407295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39763 -40.17298 -38.18708 -37.35657 -36.92607 -35.27931 -34.35887 -32.73355 -30.92249 -30.52435 -29.67415 -27.63401 -26.02200 -23.86851 -22.73459 -21.48103 -21.18098 -20.61017 -20.28851 -18.92951 -18.78997 -18.39193 -17.66192 -17.10451 -16.75933 -16.68919 -16.02354 -15.86212 -15.66247 -15.38409 -15.03925 -14.52972 -14.37132 -14.20478 -13.71101 -13.64719 -13.49974 -13.26035 -13.09485 -12.94157 -12.86601 -12.77734 -12.74992 -12.61980 -12.37484 -12.08618 -11.95384 -11.86992 -11.67104 -11.53450 -11.33008 -11.01887 -10.89986 -10.81090 -10.22147 -9.89028 -8.82277 -7.69628 -5.09972 -0.74430 1.48682 1.54533 1.57041 1.62471 1.66001 2.31420 2.55707 2.61249 2.90174 3.29711 3.43457 3.48988 3.53567 3.70813 4.03271 4.04688 4.11761 4.24310 4.30213 4.40828 4.47466 4.51745 4.64113 4.66075 4.74376 4.79321 4.86148 4.93068 4.95252 5.12199 5.20066 5.21445 5.41066 5.56637 5.63829 5.74658 5.93815 6.08238 6.31458 6.70064 7.10798 7.32980 7.78611 8.64207 9.37335 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.003723 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.453239 B = 7518.291811 C = 8622.225665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.306 1.306 6 H -0.287 1.287 7 C -0.212 4.212 8 H 0.089 0.911 9 N -0.608 5.608 10 C 0.140 3.860 11 H 0.115 0.885 12 C -0.134 4.134 13 C -0.122 4.122 14 C 0.130 3.870 15 H 0.107 0.893 16 C 0.139 3.861 17 H 0.082 0.918 18 N -0.698 5.698 19 C 0.492 3.508 20 O -0.575 6.575 21 C 0.100 3.900 22 H 0.150 0.850 23 C -0.126 4.126 24 C -0.545 4.545 25 S 2.562 3.438 26 O -0.992 6.992 27 O -1.001 7.001 28 N -1.077 6.077 29 C -0.132 4.132 30 H 0.244 0.756 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.412 0.588 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.170 0.830 40 H 0.439 0.561 41 H 0.056 0.944 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -5.910 -9.992 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.803 3.197 4 H -0.198 1.198 5 H -0.233 1.233 6 H -0.214 1.214 7 C -0.341 4.341 8 H 0.107 0.893 9 N -0.329 5.329 10 C 0.033 3.967 11 H 0.132 0.868 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.023 3.977 15 H 0.125 0.875 16 C 0.032 3.968 17 H 0.100 0.900 18 N -0.348 5.348 19 C 0.277 3.723 20 O -0.454 6.454 21 C -0.012 4.012 22 H 0.167 0.833 23 C -0.165 4.165 24 C -0.680 4.680 25 S 2.660 3.340 26 O -0.982 6.982 27 O -0.991 6.991 28 N -0.842 5.842 29 C -0.173 4.173 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.174 0.826 38 H 0.202 0.798 39 H 0.187 0.813 40 H 0.279 0.721 41 H 0.075 0.925 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.221 -6.867 -10.695 14.618 hybrid contribution 0.329 1.278 0.884 1.588 sum 7.550 -5.589 -9.811 13.583 Atomic orbital electron populations 1.69718 1.06282 1.24756 1.59079 1.25391 0.96169 1.00247 1.03922 0.85233 0.76954 0.79501 0.78049 1.19814 1.23272 1.21359 1.19323 0.90821 0.82739 1.41205 0.89325 1.46706 1.02003 0.99649 1.84582 1.23562 0.87000 0.95151 0.90992 0.86801 1.22961 0.97258 0.98058 0.99046 1.22866 0.96275 0.98801 0.98260 1.23350 0.97173 0.84569 0.92631 0.87468 1.22615 0.91664 0.98049 0.84497 0.90015 1.45967 1.44838 1.31722 1.12291 1.21546 0.82744 0.82122 0.85908 1.90706 1.38737 1.32126 1.83799 1.21388 1.03638 0.86180 0.90005 0.83297 1.22548 1.04206 0.98304 0.91462 1.30630 1.15661 1.19191 1.02520 1.06483 0.73419 0.80930 0.73126 1.93567 1.67491 1.76572 1.60537 1.93621 1.36223 1.83375 1.85845 1.54637 1.81585 1.16667 1.31319 1.23442 0.96583 0.97782 0.99486 0.94643 0.94439 0.91590 0.90448 0.92264 0.75204 0.89932 0.82606 0.79791 0.81250 0.72060 0.92511 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.97 10.47 21.65 0.23 -51.75 16 2 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 3 Si 0.97 41.41 29.55 68.60 2.03 43.44 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.31 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.21 -10.14 10.59 84.03 0.89 -9.25 16 8 H 0.09 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.61 -26.34 2.98 -615.15 -1.83 -28.17 16 10 C 0.14 6.08 4.67 46.23 0.22 6.30 16 11 H 0.11 5.94 5.52 -2.39 -0.01 5.93 16 12 C -0.13 -5.02 6.46 32.21 0.21 -4.81 16 13 C -0.12 -3.96 6.44 32.23 0.21 -3.75 16 14 C 0.13 4.40 5.06 46.24 0.23 4.63 16 15 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 16 C 0.14 4.57 2.84 46.95 0.13 4.71 16 17 H 0.08 2.74 7.22 -2.39 -0.02 2.72 16 18 N -0.70 -19.29 5.08 -433.32 -2.20 -21.49 16 19 C 0.49 13.54 6.84 87.66 0.60 14.14 16 20 O -0.57 -21.24 16.14 -3.04 -0.05 -21.28 16 21 C 0.10 1.73 3.54 44.32 0.16 1.89 16 22 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.13 -1.69 6.06 31.54 0.19 -1.50 16 24 C -0.55 -4.97 7.66 72.86 0.56 -4.42 16 25 S 2.56 52.24 6.47 -56.49 -0.37 51.88 16 26 O -0.99 -25.28 18.14 -127.81 -2.32 -27.60 16 27 O -1.00 -31.45 18.14 -127.81 -2.32 -33.77 16 28 N -1.08 -20.93 6.11 -172.33 -1.05 -21.98 16 29 C -0.13 -5.10 6.28 32.55 0.20 -4.89 16 30 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 33 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 10.04 8.66 -92.71 -0.80 9.24 16 36 H 0.08 1.53 7.82 -2.38 -0.02 1.51 16 37 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.18 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.17 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.44 8.08 8.96 -93.00 -0.83 7.25 16 41 H 0.06 2.10 7.85 -2.38 -0.02 2.08 16 42 H 0.04 1.78 8.02 -2.39 -0.02 1.77 16 Total: -1.00 -78.91 349.19 -4.39 -83.30 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.57 Total: 27.20 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.06 Total: 0.23 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -4.86 Total: -123.39 kcal Atomic # 8 Polarization: -77.97 SS G_CDS: -4.69 Total: -82.66 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.37 Total: 51.88 kcal Total: -78.91 -4.39 -83.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098426533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds