Wall clock time and date at job start Tue Mar 31 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99911 * 2 1 4 4 H 1.48504 * 109.46736 * 239.99657 * 3 2 1 5 5 H 1.48492 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47332 * 120.00129 * 3 2 1 7 7 C 1.38798 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00562 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99976 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00286 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00322 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47246 * 180.02562 * 14 13 11 16 16 H 1.08992 * 109.47188 * 60.00457 * 15 14 13 17 17 O 1.42903 * 109.47030 * 300.00129 * 15 14 13 18 18 C 1.53006 * 109.46811 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.46998 * 184.99974 * 18 15 14 20 20 C 1.38991 * 120.00440 * 180.02562 * 19 18 15 21 21 C 1.39072 * 119.68381 * 0.02562 * 20 19 18 22 22 C 1.38383 * 119.15722 * 179.97438 * 21 20 19 23 23 C 1.38755 * 118.53247 * 0.02562 * 22 21 20 24 24 C 1.38378 * 119.30584 * 359.97438 * 23 22 21 25 25 F 1.35104 * 119.60329 * 179.97438 * 24 23 22 26 26 N 1.32132 * 120.79173 * 359.74480 * 24 23 22 27 27 H 0.97003 * 119.99820 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46766 * 60.00639 * 10 9 7 29 29 H 1.08997 * 109.46990 * 300.00115 * 10 9 7 30 30 H 0.97010 * 119.99917 * 0.02562 * 13 11 10 31 31 H 1.09009 * 109.46918 * 60.00506 * 14 13 11 32 32 H 1.09001 * 109.47282 * 300.00875 * 14 13 11 33 33 H 0.96698 * 113.99763 * 300.00194 * 17 15 14 34 34 H 1.08993 * 109.46955 * 305.00200 * 18 15 14 35 35 H 1.09000 * 109.47050 * 65.00029 * 18 15 14 36 36 H 0.97010 * 119.99909 * 359.97438 * 19 18 15 37 37 H 1.08004 * 120.42727 * 359.95743 * 21 20 19 38 38 H 1.07995 * 120.73492 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.35159 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0008 15 6 3.5024 -8.6985 0.0009 16 1 4.1109 -8.5384 0.8909 17 8 4.3004 -8.4886 -1.1658 18 6 2.9658 -10.1314 0.0003 19 7 4.0831 -11.0713 0.1208 20 6 3.8410 -12.4397 0.1420 21 6 2.5355 -12.9097 0.0478 22 6 2.3069 -14.2743 0.0694 23 6 3.3955 -15.1269 0.1854 24 6 4.6684 -14.5917 0.2750 25 9 5.7326 -15.4163 0.3887 26 7 4.8560 -13.2841 0.2461 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8906 29 1 3.1245 -3.7313 -0.8894 30 1 3.8009 -6.1835 0.0004 31 1 1.7215 -7.8751 -0.8891 32 1 1.7220 -7.8752 0.8909 33 1 3.8225 -8.6144 -1.9970 34 1 2.2861 -10.2651 0.8418 35 1 2.4320 -10.3190 -0.9313 36 1 4.9921 -10.7385 0.1851 37 1 1.7103 -12.2184 -0.0409 38 1 1.3035 -14.6671 -0.0025 39 1 3.2509 -16.1970 0.2057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105754098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:10 Heat of formation + Delta-G solvation = -89.322318 kcal Electronic energy + Delta-G solvation = -23636.780142 eV Core-core repulsion = 19620.371183 eV Total energy + Delta-G solvation = -4016.408959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.36701 -40.65081 -39.55849 -38.27611 -35.74605 -34.24952 -33.07438 -32.45491 -31.25687 -29.90155 -28.61898 -25.83974 -25.39046 -24.04873 -22.93887 -22.24478 -20.42034 -18.64046 -18.26597 -17.96064 -17.15590 -16.82594 -16.54429 -16.40907 -16.35016 -15.99360 -15.33023 -15.15357 -15.06693 -14.82456 -14.39319 -14.11953 -13.87904 -13.82487 -13.54555 -13.23739 -13.14380 -12.80779 -12.67844 -12.58337 -11.83740 -11.56098 -11.07451 -11.05620 -10.88712 -10.82408 -10.71494 -10.16866 -10.11056 -9.85491 -9.51517 -9.10003 -9.02575 -8.29380 -8.28378 -6.53679 -6.24232 -3.95330 0.62357 0.84763 2.27213 2.95243 3.00029 3.22007 3.25142 3.25637 3.28092 3.46411 3.60480 3.86105 4.12600 4.18055 4.19501 4.28628 4.42578 4.46790 4.68908 4.75368 4.93164 4.96546 5.09491 5.11063 5.25542 5.35908 5.39804 5.51348 5.66832 5.70846 5.84623 5.98531 6.10246 6.38123 6.46385 6.92498 7.07261 7.46483 7.56743 7.60231 8.32500 8.50802 9.21132 10.83112 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.046550 B = 0.001572 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.355851 B =17807.512783 C =18282.841512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.093 3.907 15 C 0.087 3.913 16 H 0.115 0.885 17 O -0.552 6.552 18 C 0.097 3.903 19 N -0.713 5.713 20 C 0.440 3.560 21 C -0.251 4.251 22 C -0.005 4.005 23 C -0.258 4.258 24 C 0.356 3.644 25 F -0.113 7.113 26 N -0.578 5.578 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.403 0.597 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.381 0.619 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -28.676 -0.381 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.389 5.389 14 C -0.032 4.032 15 C 0.027 3.973 16 H 0.133 0.867 17 O -0.358 6.358 18 C -0.028 4.028 19 N -0.345 5.345 20 C 0.203 3.797 21 C -0.276 4.276 22 C -0.031 4.031 23 C -0.282 4.282 24 C 0.202 3.798 25 F -0.092 7.092 26 N -0.302 5.302 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.238 0.762 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.069 -28.353 0.100 28.995 hybrid contribution 1.788 0.837 -0.362 2.007 sum 7.857 -27.516 -0.262 28.617 Atomic orbital electron populations 1.70004 1.05958 1.27601 1.46730 1.24988 0.95030 0.99030 0.94467 0.86220 0.79239 0.81196 0.78826 1.19925 1.20792 1.19926 1.22829 0.94901 0.91628 1.59166 0.90932 1.85373 1.04872 0.96365 1.96748 1.23529 1.06636 0.95183 1.05057 1.20343 0.86437 0.86314 0.74990 1.90707 1.15381 1.85608 1.47567 1.45838 1.10384 1.04673 1.78022 1.21798 0.95600 0.82207 1.03611 1.22365 0.93088 0.91302 0.90565 0.86731 1.86626 1.40413 1.92893 1.15886 1.22097 0.89235 0.88451 1.03067 1.44412 1.10377 1.00796 1.78946 1.17783 0.87968 0.84864 0.89049 1.21475 0.96151 0.96949 1.13058 1.21217 0.99079 0.92104 0.90688 1.21504 0.91249 1.02212 1.13216 1.17657 0.82769 0.84552 0.94806 1.91632 1.56109 1.68945 1.92562 1.66198 1.36493 1.02976 1.24529 0.92105 0.89159 0.89101 0.76173 0.90897 0.90311 0.77022 0.90029 0.90644 0.75117 0.84177 0.83733 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.76 16 11 C 0.53 9.29 7.85 -10.98 -0.09 9.20 16 12 O -0.52 -11.08 15.86 5.56 0.09 -11.00 16 13 N -0.73 -8.57 5.45 -60.29 -0.33 -8.90 16 14 C 0.09 0.80 5.34 -4.04 -0.02 0.77 16 15 C 0.09 0.49 3.09 -26.73 -0.08 0.40 16 16 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 17 O -0.55 -3.60 13.03 -35.23 -0.46 -4.06 16 18 C 0.10 0.45 4.53 -4.04 -0.02 0.43 16 19 N -0.71 -4.74 5.67 -60.43 -0.34 -5.08 16 20 C 0.44 3.68 7.65 -155.02 -1.19 2.49 16 21 C -0.25 -1.59 9.33 -39.22 -0.37 -1.95 16 22 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 23 C -0.26 -1.72 10.08 -39.34 -0.40 -2.12 16 24 C 0.36 3.37 8.41 -17.37 -0.15 3.22 16 25 F -0.11 -1.13 17.29 2.25 0.04 -1.09 16 26 N -0.58 -6.05 10.40 -12.78 -0.13 -6.18 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.40 3.93 8.35 -40.82 -0.34 3.59 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.38 1.61 9.04 45.56 0.41 2.02 16 34 H 0.08 0.32 7.93 -51.93 -0.41 -0.09 16 35 H 0.08 0.28 7.92 -51.93 -0.41 -0.13 16 36 H 0.41 2.94 8.60 -40.82 -0.35 2.59 16 37 H 0.14 0.60 6.70 -52.48 -0.35 0.25 16 38 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -36.13 361.42 -8.43 -44.56 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.96 Total: 2.64 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.28 Total: -3.57 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.07 Total: -45.29 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.37 Total: -15.05 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.13 -8.43 -44.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105754098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.759 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds