Wall clock time and date at job start Tue Mar 31 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99801 * 2 1 4 4 H 1.48507 * 109.47224 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00069 * 3 2 1 6 6 H 1.48506 * 109.47200 * 150.00351 * 3 2 1 7 7 C 1.38804 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99258 * 0.02562 * 7 2 1 9 9 S 1.76191 * 120.00162 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99976 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46992 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00548 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99764 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00273 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47658 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.46862 * 305.00512 * 15 14 13 17 17 O 1.42905 * 109.46980 * 64.99639 * 15 14 13 18 18 C 1.52997 * 109.47482 * 184.99947 * 15 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 15 14 20 20 C 1.38999 * 119.99714 * 179.97438 * 19 18 15 21 21 C 1.39062 * 119.68766 * 359.73088 * 20 19 18 22 22 C 1.38386 * 119.15373 * 179.79098 * 21 20 19 23 23 C 1.38759 * 118.53182 * 0.47306 * 22 21 20 24 24 C 1.38373 * 119.30540 * 359.74816 * 23 22 21 25 25 F 1.35098 * 119.60192 * 180.02562 * 24 23 22 26 26 N 1.32134 * 120.79309 * 0.02562 * 24 23 22 27 27 H 0.96997 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47373 * 60.00312 * 10 9 7 29 29 H 1.09004 * 109.47406 * 300.00074 * 10 9 7 30 30 H 0.97002 * 119.99790 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.46952 * 59.99319 * 14 13 11 32 32 H 1.09004 * 109.46722 * 300.00399 * 14 13 11 33 33 H 0.96696 * 114.00036 * 60.00352 * 17 15 14 34 34 H 1.09002 * 109.47153 * 59.99783 * 18 15 14 35 35 H 1.09001 * 109.46832 * 299.99974 * 18 15 14 36 36 H 0.96996 * 119.99606 * 0.02562 * 19 18 15 37 37 H 1.07998 * 120.42689 * 359.97438 * 21 20 19 38 38 H 1.07996 * 120.73400 * 180.21847 * 22 21 20 39 39 H 1.07999 * 120.34719 * 179.77348 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2324 -0.0026 12 8 6.3441 -2.2962 -0.0024 13 7 6.0458 -4.4946 -0.0030 14 6 7.4908 -4.7357 -0.0037 15 6 7.7565 -6.2424 -0.0047 16 1 7.2394 -6.7030 0.8370 17 8 7.2780 -6.8096 -1.2259 18 6 9.2603 -6.4952 0.1203 19 7 9.5147 -7.9380 0.1200 20 6 10.8164 -8.4141 0.2237 21 6 11.8729 -7.5152 0.3218 22 6 13.1641 -8.0014 0.4289 23 6 13.3574 -9.3754 0.4244 24 6 12.2612 -10.2132 0.3190 25 9 12.4424 -11.5520 0.3145 26 7 11.0393 -9.7196 0.2227 27 1 -0.4850 0.8400 -0.0004 28 1 3.6434 -3.4310 -0.8927 29 1 3.6440 -3.4322 0.8873 30 1 5.4291 -5.2434 -0.0029 31 1 7.9341 -4.2887 0.8861 32 1 7.9333 -4.2884 -0.8938 33 1 7.6953 -6.4458 -2.0187 34 1 9.6253 -6.0624 1.0518 35 1 9.7773 -6.0345 -0.7215 36 1 8.7747 -8.5608 0.0466 37 1 11.6878 -6.4511 0.3174 38 1 14.0031 -7.3262 0.5101 39 1 14.3529 -9.7866 0.5028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105754099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:15 Heat of formation + Delta-G solvation = -88.963672 kcal Electronic energy + Delta-G solvation = -23684.410536 eV Core-core repulsion = 19668.017129 eV Total energy + Delta-G solvation = -4016.393407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.38547 -40.67663 -39.65329 -38.36004 -35.75877 -34.36768 -33.09663 -32.46975 -31.31284 -29.99125 -28.70702 -25.88430 -25.54161 -24.07495 -22.98258 -22.28642 -20.54236 -18.66794 -18.29719 -18.00512 -17.17535 -16.88710 -16.58999 -16.45079 -16.42246 -16.03004 -15.40080 -15.25963 -15.11861 -14.95842 -14.44004 -14.17511 -13.86186 -13.76821 -13.56164 -13.32535 -13.26976 -12.87080 -12.82410 -12.70031 -11.96716 -11.61504 -11.30453 -11.03901 -10.91544 -10.83125 -10.61321 -10.18883 -10.13305 -9.89366 -9.64370 -9.15344 -9.02739 -8.54828 -8.31751 -6.96035 -6.31728 -4.04098 0.60202 0.82593 2.23485 2.70910 2.86537 3.20633 3.23446 3.30408 3.45301 3.47156 3.57816 3.81330 4.07728 4.16597 4.22673 4.30085 4.38592 4.43823 4.66635 4.68900 4.74454 4.88481 4.92279 5.07262 5.16581 5.23213 5.33702 5.39767 5.50846 5.68558 5.71576 5.95950 5.97089 6.33128 6.38849 6.90612 7.03373 7.44462 7.48476 7.91207 8.37103 8.39100 9.14195 10.77474 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.045648 B = 0.001624 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.236685 B =17232.588950 C =17719.520410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.732 5.732 14 C 0.094 3.906 15 C 0.087 3.913 16 H 0.116 0.884 17 O -0.552 6.552 18 C 0.097 3.903 19 N -0.713 5.713 20 C 0.440 3.560 21 C -0.251 4.251 22 C -0.005 4.005 23 C -0.257 4.257 24 C 0.357 3.643 25 F -0.113 7.113 26 N -0.578 5.578 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.405 0.595 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.381 0.619 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.413 0.587 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.103 -18.308 0.426 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.387 5.387 14 C -0.032 4.032 15 C 0.027 3.973 16 H 0.133 0.867 17 O -0.358 6.358 18 C -0.029 4.029 19 N -0.345 5.345 20 C 0.203 3.797 21 C -0.277 4.277 22 C -0.031 4.031 23 C -0.282 4.282 24 C 0.202 3.798 25 F -0.092 7.092 26 N -0.302 5.302 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.239 0.761 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.230 0.770 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 26.130 -17.373 0.769 31.388 hybrid contribution -0.346 -0.380 -0.328 0.609 sum 25.784 -17.752 0.442 31.308 Atomic orbital electron populations 1.69934 1.05918 1.27795 1.47936 1.24715 0.94452 0.98965 0.93160 0.86733 0.81867 0.83291 0.79928 1.19206 1.19911 1.15958 1.22313 0.88211 0.97576 1.58924 0.89349 1.84768 1.09394 0.99946 1.97445 1.23275 0.93791 1.04462 1.05954 1.20312 0.90706 0.82105 0.75077 1.90703 1.58775 1.42225 1.47777 1.45808 1.06749 1.08376 1.77774 1.21820 0.83279 0.94438 1.03617 1.22365 0.92598 0.93150 0.89236 0.86668 1.86634 1.67304 1.66389 1.15429 1.22078 0.96806 0.80760 1.03234 1.44387 1.04452 1.06763 1.78936 1.17778 0.86243 0.86590 0.89053 1.21468 0.92391 1.00741 1.13065 1.21218 0.96870 0.94303 0.90701 1.21506 0.99296 0.94127 1.13240 1.17656 0.88810 0.78436 0.94851 1.91632 1.95037 1.29520 1.93033 1.66201 1.24345 1.15075 1.24537 0.91910 0.88371 0.88381 0.76062 0.90266 0.90827 0.77024 0.90050 0.90673 0.75022 0.84203 0.83740 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.47 27.74 -169.99 -4.71 16.75 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 11 C 0.53 8.71 7.85 -10.98 -0.09 8.63 16 12 O -0.52 -10.46 15.86 5.56 0.09 -10.37 16 13 N -0.73 -7.97 5.50 -60.30 -0.33 -8.30 16 14 C 0.09 0.74 5.31 -4.05 -0.02 0.71 16 15 C 0.09 0.44 3.09 -26.74 -0.08 0.36 16 16 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 17 O -0.55 -3.39 13.03 -35.23 -0.46 -3.85 16 18 C 0.10 0.41 4.55 -4.04 -0.02 0.39 16 19 N -0.71 -4.53 5.62 -60.43 -0.34 -4.87 16 20 C 0.44 3.57 7.65 -155.02 -1.19 2.38 16 21 C -0.25 -1.52 9.33 -39.22 -0.37 -1.89 16 22 C -0.01 -0.03 10.16 -39.33 -0.40 -0.43 16 23 C -0.26 -1.67 10.08 -39.34 -0.40 -2.07 16 24 C 0.36 3.30 8.40 -17.37 -0.15 3.16 16 25 F -0.11 -1.11 17.29 2.25 0.04 -1.07 16 26 N -0.58 -5.93 10.40 -12.78 -0.13 -6.06 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 30 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.38 1.46 9.05 45.56 0.41 1.87 16 34 H 0.08 0.29 7.94 -51.93 -0.41 -0.13 16 35 H 0.08 0.25 7.91 -51.93 -0.41 -0.16 16 36 H 0.41 2.87 8.47 -40.82 -0.35 2.52 16 37 H 0.14 0.56 6.70 -52.49 -0.35 0.21 16 38 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -35.87 358.73 -7.92 -43.79 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.99 Total: 2.28 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.27 Total: -2.70 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.03 Total: -44.74 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.37 Total: -14.22 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.87 -7.92 -43.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105754099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.171 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds