Wall clock time and date at job start Tue Mar 31 2020 04:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55516 * 2 1 4 4 N 1.46494 * 109.47496 * 60.12496 * 3 2 1 5 5 C 1.34773 * 120.00181 * 179.97438 * 4 3 2 6 6 O 1.21576 * 120.00443 * 0.02562 * 5 4 3 7 7 C 1.47524 * 120.00023 * 180.02562 * 5 4 3 8 8 C 1.36780 * 126.92790 * 179.70973 * 7 5 4 9 9 C 1.41409 * 103.83867 * 179.87861 * 8 7 5 10 10 Cl 1.73607 * 126.72936 * 180.11685 * 9 8 7 11 11 N 1.30229 * 106.54937 * 0.39547 * 9 8 7 12 12 O 1.20884 * 111.96021 * 359.74335 * 11 9 8 13 13 C 1.53292 * 109.51360 * 239.87256 * 2 1 3 14 14 N 1.47233 * 108.40299 * 292.38347 * 13 2 1 15 15 C 1.36938 * 121.03150 * 129.45891 * 14 13 2 16 16 H 1.07995 * 120.00241 * 206.17702 * 15 14 13 17 17 C 1.38816 * 119.99718 * 26.17954 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.89599 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.89669 * 17 15 14 20 20 H 1.48504 * 109.46919 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47372 * 119.99555 * 19 17 15 22 22 H 1.48500 * 109.47051 * 240.00016 * 19 17 15 23 23 C 1.47151 * 117.98790 * 309.48233 * 14 13 2 24 24 C 1.53300 * 108.41429 * 50.51917 * 23 14 13 25 25 O 1.42962 * 109.22183 * 307.68047 * 24 23 14 26 26 H 1.09005 * 109.47000 * 299.87605 * 1 2 3 27 27 H 1.09000 * 109.46959 * 59.86855 * 1 2 3 28 28 H 1.09000 * 109.47652 * 179.87596 * 1 2 3 29 29 H 1.09004 * 109.47099 * 180.13226 * 3 2 1 30 30 H 1.09002 * 109.47319 * 300.12419 * 3 2 1 31 31 H 0.97006 * 119.99601 * 0.02562 * 4 3 2 32 32 H 1.07997 * 128.08250 * 359.97438 * 8 7 5 33 33 H 1.09001 * 109.68446 * 52.09853 * 13 2 1 34 34 H 1.08991 * 109.68807 * 172.65669 * 13 2 1 35 35 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.67883 * 290.77953 * 23 14 13 37 37 H 1.08994 * 109.68171 * 170.26092 * 23 14 13 38 38 H 1.09004 * 109.51066 * 67.60375 * 24 23 14 39 39 H 1.09001 * 109.51236 * 187.70563 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 7 1.5573 2.1322 1.1976 5 6 1.8856 3.4218 1.4114 6 8 2.5838 4.0122 0.6101 7 6 1.3979 4.1169 2.6177 8 6 1.6470 5.4131 2.9765 9 6 0.9504 5.5659 4.1975 10 17 0.8665 6.9999 5.1726 11 7 0.3890 4.4184 4.4505 12 8 0.6226 3.6015 3.5905 13 6 2.0420 -0.7252 -1.2497 14 7 1.6958 -2.1516 -1.1339 15 6 1.0611 -2.8090 -2.1538 16 1 0.4490 -3.6729 -1.9411 17 6 1.2046 -2.3649 -3.4612 18 7 2.1854 -1.5449 -3.7739 19 14 0.0055 -2.9313 -4.7769 20 1 -0.9978 -3.8440 -4.1723 21 1 -0.6845 -1.7520 -5.3585 22 1 0.7460 -3.6486 -5.8457 23 6 2.0521 -2.8498 0.1114 24 6 1.5396 -2.0210 1.2949 25 8 2.0075 -0.6763 1.1655 26 1 -0.3633 0.5119 0.8911 27 1 -0.3633 0.5159 -0.8888 28 1 -0.3634 -1.0276 -0.0022 29 1 3.1321 1.4401 -0.0024 30 1 1.6777 1.9568 -0.8889 31 1 1.0005 1.6611 1.8371 32 1 2.2366 6.1486 2.4494 33 1 1.5704 -0.3042 -2.1376 34 1 3.1240 -0.6149 -1.3208 35 1 2.2855 -1.2343 -4.6874 36 1 3.1351 -2.9532 0.1773 37 1 1.5876 -3.8357 0.1253 38 1 0.4496 -2.0283 1.2996 39 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108357761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:40 Heat of formation + Delta-G solvation = 11.859649 kcal Electronic energy + Delta-G solvation = -26107.296857 eV Core-core repulsion = 22080.858982 eV Total energy + Delta-G solvation = -4026.437875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -45.54922 -39.98631 -38.88078 -37.55264 -35.26685 -34.44495 -34.06332 -32.71635 -31.61270 -31.30155 -28.01495 -26.86898 -25.95309 -24.01008 -23.92241 -23.27832 -21.49333 -20.94069 -19.39166 -18.55255 -18.33087 -17.16585 -16.66777 -16.15662 -15.77711 -15.56228 -15.22861 -14.84606 -14.45169 -14.17941 -14.10969 -13.98004 -13.58775 -13.17553 -13.13831 -12.91228 -12.81997 -12.61876 -12.03155 -11.64763 -11.51214 -11.25375 -11.08832 -10.89244 -10.72249 -10.58052 -10.48675 -10.36852 -10.27676 -10.20551 -10.01699 -9.61678 -9.19547 -9.07721 -8.59216 -6.79829 -5.89807 -3.32889 0.36812 1.00214 1.39018 2.20603 2.76667 3.01244 3.30345 3.38956 3.40311 3.82915 4.15508 4.28399 4.39082 4.55977 4.66669 5.02901 5.25891 5.28044 5.37110 5.44156 5.60594 5.84220 5.87087 5.90752 5.95257 6.06566 6.16766 6.28910 6.42393 6.57097 6.69397 6.77219 7.00574 7.16211 7.39202 7.49184 7.66764 7.78902 7.85860 8.27528 9.05610 9.68635 10.25517 11.18345 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.025466 B = 0.002541 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.232535 B =11017.570330 C =11446.010038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 C 0.137 3.863 4 N -0.695 5.695 5 C 0.599 3.401 6 O -0.510 6.510 7 C -0.059 4.059 8 C -0.141 4.141 9 C 0.051 3.949 10 Cl 0.031 6.969 11 N -0.328 5.328 12 O 0.138 5.862 13 C 0.159 3.841 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.410 0.590 32 H 0.195 0.805 33 H 0.098 0.902 34 H 0.031 0.969 35 H 0.255 0.745 36 H 0.026 0.974 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 12.066 14.629 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 C 0.014 3.986 4 N -0.346 5.346 5 C 0.381 3.619 6 O -0.385 6.385 7 C -0.125 4.125 8 C -0.164 4.164 9 C -0.132 4.132 10 Cl 0.059 6.941 11 N -0.028 5.028 12 O 0.061 5.939 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.383 4.383 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.304 6.304 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.247 0.753 32 H 0.212 0.788 33 H 0.116 0.884 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.900 12.291 15.072 19.664 hybrid contribution -0.526 -0.003 -0.897 1.040 sum -3.426 12.288 14.175 19.070 Atomic orbital electron populations 1.22235 0.95557 1.03533 1.00862 1.22568 0.93722 0.90284 0.89844 1.21571 1.00438 0.90206 0.86363 1.45925 1.52017 1.10488 1.26152 1.16441 0.80939 0.82204 0.82362 1.90908 1.37489 1.66217 1.43931 1.24395 0.99277 0.94736 0.94139 1.22736 1.02243 0.96686 0.94783 1.24067 1.02283 0.91502 0.95379 1.98427 1.97318 1.29702 1.68645 1.73874 1.18706 0.99628 1.10613 1.85081 1.51208 1.33881 1.23754 1.21310 0.97899 0.84021 0.93502 1.44015 1.68642 1.04888 1.13853 1.19196 1.21636 1.12097 0.85347 0.91335 1.25037 0.97303 1.00086 0.97100 1.70013 1.29241 1.36806 1.18494 0.86227 0.80732 0.78056 0.81778 1.20249 1.21440 1.21643 1.21605 0.97601 0.95268 0.87303 1.23049 0.98393 0.82918 0.98795 1.87807 1.72929 1.26006 1.43651 0.93813 0.91731 0.90605 0.89990 0.89227 0.75325 0.78807 0.88427 0.95114 0.93444 0.95598 0.91999 0.93269 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.92 37.16 0.29 -2.30 16 2 C 0.08 1.31 0.76 -90.47 -0.07 1.25 16 3 C 0.14 2.08 4.82 -4.04 -0.02 2.06 16 4 N -0.70 -8.90 5.15 -61.36 -0.32 -9.21 16 5 C 0.60 7.79 7.82 -12.48 -0.10 7.69 16 6 O -0.51 -8.06 16.91 5.30 0.09 -7.97 16 7 C -0.06 -0.66 7.29 -36.33 -0.26 -0.92 16 8 C -0.14 -1.39 10.96 -38.90 -0.43 -1.82 16 9 C 0.05 0.52 7.97 -17.02 -0.14 0.38 16 10 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 11 N -0.33 -3.79 12.05 32.82 0.40 -3.39 16 12 O 0.14 1.52 11.04 15.52 0.17 1.69 16 13 C 0.16 3.49 4.12 -3.49 -0.01 3.48 16 14 N -0.59 -13.74 2.57 -171.77 -0.44 -14.18 16 15 C -0.25 -6.51 9.65 -15.06 -0.15 -6.66 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 18 N -0.90 -24.84 11.14 55.49 0.62 -24.22 16 19 Si 0.90 20.71 29.59 -169.99 -5.03 15.68 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 C 0.11 2.13 6.73 -3.53 -0.02 2.10 16 24 C 0.05 0.75 6.60 37.31 0.25 1.00 16 25 O -0.38 -6.56 9.97 -35.23 -0.35 -6.91 16 26 H 0.04 0.57 6.88 -51.93 -0.36 0.21 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.33 6.11 -51.93 -0.32 1.01 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.41 4.71 7.03 -40.82 -0.29 4.42 16 32 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.10 2.37 6.14 -51.93 -0.32 2.05 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 38 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -28.93 342.12 -6.50 -35.43 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.53 Total: 2.92 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.74 Total: 6.27 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.26 Total: -51.01 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.93 -6.50 -35.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108357761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.291 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds