Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99947 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99873 * 179.72298 * 9 7 2 11 11 O 1.21295 * 120.00056 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00080 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47299 * 180.02562 * 12 10 9 14 14 C 1.33999 * 124.22550 * 269.70351 * 13 12 10 15 15 O 1.21542 * 123.81549 * 0.02562 * 14 13 12 16 16 N 1.34957 * 112.37065 * 179.83455 * 14 13 12 17 17 C 1.45994 * 106.02159 * 0.47146 * 16 14 13 18 18 C 1.53132 * 112.15244 * 121.48787 * 17 16 14 19 19 C 1.51623 * 104.88226 * 96.22148 * 18 17 16 20 20 C 1.38437 * 130.35035 * 196.10822 * 19 18 17 21 21 C 1.38110 * 120.19057 * 179.88137 * 20 19 18 22 22 C 1.38260 * 119.95169 * 0.02562 * 21 20 19 23 23 C 1.38126 * 119.94497 * 0.02562 * 22 21 20 24 24 C 1.38313 * 109.78531 * 16.06068 * 19 18 17 25 25 C 1.51618 * 109.77397 * 0.10408 * 24 19 18 26 26 C 1.35187 * 124.22231 * 90.00144 * 13 12 10 27 27 O 1.21239 * 127.45123 * 359.93767 * 26 13 12 28 28 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00209 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46762 * 300.00389 * 12 10 9 31 31 H 1.09001 * 109.46863 * 60.00488 * 12 10 9 32 32 H 0.96998 * 126.98996 * 180.21735 * 16 14 13 33 33 H 1.09004 * 110.35450 * 215.06950 * 18 17 16 34 34 H 1.09001 * 110.35792 * 337.36717 * 18 17 16 35 35 H 1.08002 * 119.90514 * 359.87846 * 20 19 18 36 36 H 1.08001 * 120.02567 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.02721 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.90193 * 179.97438 * 23 22 21 39 39 H 1.09003 * 110.35855 * 224.92649 * 25 24 19 40 40 H 1.09000 * 110.45815 * 102.67397 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0067 11 8 3.2102 -3.5578 -0.0118 12 6 1.2437 -4.8630 -0.0073 13 7 2.1957 -5.9765 -0.0138 14 6 2.6769 -6.5502 -1.1251 15 8 2.3732 -6.2053 -2.2503 16 7 3.5401 -7.5515 -0.8538 17 6 3.6135 -7.6369 0.6018 18 6 3.2087 -9.0198 1.1202 19 6 4.5165 -9.7644 1.3053 20 6 4.7630 -11.1176 1.4617 21 6 6.0574 -11.5747 1.6144 22 6 7.1105 -10.6789 1.6118 23 6 6.8665 -9.3282 1.4569 24 6 5.5699 -8.8681 1.3035 25 6 5.0434 -7.4582 1.1196 26 6 2.6940 -6.5574 1.1005 27 8 2.4514 -6.2700 2.2531 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6207 -4.9233 0.8852 31 1 0.6134 -4.9182 -0.8949 32 1 4.0125 -8.1047 -1.4954 33 1 2.6857 -8.9296 2.0723 34 1 2.5819 -9.5303 0.3890 35 1 3.9409 -11.8180 1.4644 36 1 6.2467 -12.6310 1.7358 37 1 8.1231 -11.0349 1.7315 38 1 7.6897 -8.6291 1.4554 39 1 5.6470 -6.9204 0.3884 40 1 5.0385 -6.9262 2.0709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119693907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -42.858191 kcal Electronic energy + Delta-G solvation = -27619.848962 eV Core-core repulsion = 23593.471193 eV Total energy + Delta-G solvation = -4026.377769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 10.98 seconds Orbital eigenvalues (eV) -42.69400 -40.09288 -38.45246 -38.18139 -36.63173 -35.27263 -34.00733 -33.15548 -31.77963 -31.32837 -28.90497 -28.32867 -27.83080 -24.90117 -24.04406 -22.43956 -21.52728 -21.36769 -20.67005 -19.38301 -18.14163 -17.76577 -16.94851 -16.67983 -16.46002 -15.89946 -15.72587 -15.35488 -15.18290 -15.02371 -14.48149 -14.06106 -14.02657 -13.87627 -13.79936 -13.65411 -13.58672 -13.22532 -12.91119 -12.60070 -12.11825 -12.00893 -11.72681 -11.60143 -11.56822 -11.12601 -11.07160 -10.75580 -10.41864 -10.27486 -10.11911 -9.92524 -9.57821 -9.55578 -9.08792 -8.85144 -8.43386 -8.04492 -6.46726 -3.87883 1.02474 1.09069 1.67277 2.27190 3.05536 3.15592 3.18708 3.25370 3.31493 3.44819 3.76102 3.83031 3.99783 4.14698 4.20783 4.57689 4.62259 4.74739 4.77613 4.88240 5.06303 5.17283 5.19826 5.30375 5.33148 5.39024 5.45498 5.51470 5.55154 5.68988 5.77429 5.79212 5.88432 6.12290 6.17686 6.21241 6.30824 6.68092 6.79997 7.17759 7.46546 7.50986 7.96524 8.23901 8.51462 9.10397 9.43331 9.92746 10.70446 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.002761 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.582295 B =10138.791901 C =10523.180925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.551 5.551 10 C 0.425 3.575 11 O -0.587 6.587 12 C 0.106 3.894 13 N -0.551 5.551 14 C 0.711 3.289 15 O -0.534 6.534 16 N -0.715 5.715 17 C 0.121 3.879 18 C -0.075 4.075 19 C -0.095 4.095 20 C -0.102 4.102 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.076 4.076 26 C 0.546 3.454 27 O -0.458 6.458 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.439 0.561 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 -22.986 3.047 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.210 3.790 11 O -0.473 6.473 12 C -0.020 4.020 13 N -0.296 5.296 14 C 0.412 3.588 15 O -0.406 6.406 16 N -0.380 5.380 17 C 0.029 3.971 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.089 4.089 25 C -0.114 4.114 26 C 0.332 3.668 27 O -0.326 6.326 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.283 0.717 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.349 -22.350 3.079 23.728 hybrid contribution 0.071 0.677 -0.297 0.743 sum 7.420 -21.674 2.782 23.077 Atomic orbital electron populations 1.69608 1.05957 1.28405 1.49795 1.25295 0.95677 0.99826 0.96947 0.85821 0.79237 0.80558 0.78469 1.20288 1.20805 1.19364 1.19705 0.93406 0.81967 1.47891 0.87833 1.41759 1.09308 1.04381 1.63219 1.19873 0.88592 0.84908 0.85667 1.90532 1.13578 1.86884 1.56265 1.21464 0.90338 0.84504 1.05646 1.45897 1.43443 1.32538 1.07678 1.15903 0.79139 0.79548 0.84221 1.91006 1.62841 1.66212 1.20562 1.45274 1.48536 1.37941 1.06212 1.20900 0.97347 0.96179 0.82638 1.21140 0.95848 0.91095 1.03209 1.20435 0.94806 0.93602 1.00662 1.20571 0.97098 0.93896 1.00432 1.21050 0.92451 0.99709 1.00614 1.21069 0.99221 0.92956 1.00333 1.20629 0.95485 0.95744 1.00125 1.20489 0.93603 0.94912 0.99933 1.21132 0.91917 0.94689 1.03710 1.20034 0.79774 0.81916 0.85060 1.90798 1.59364 1.65207 1.17266 0.91678 0.77185 0.87097 0.86879 0.71675 0.87656 0.88712 0.86002 0.85805 0.85767 0.85861 0.88397 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.10 5.29 -10.96 -0.06 -14.16 16 10 C 0.43 10.30 7.85 -10.98 -0.09 10.22 16 11 O -0.59 -16.29 16.01 5.54 0.09 -16.20 16 12 C 0.11 1.94 6.20 -5.19 -0.03 1.91 16 13 N -0.55 -9.61 2.11 -122.22 -0.26 -9.87 16 14 C 0.71 12.06 8.64 -87.45 -0.76 11.30 16 15 O -0.53 -10.80 17.49 5.33 0.09 -10.71 16 16 N -0.71 -8.84 5.96 -54.02 -0.32 -9.17 16 17 C 0.12 1.47 1.22 -133.29 -0.16 1.31 16 18 C -0.07 -0.70 6.11 -27.36 -0.17 -0.87 16 19 C -0.09 -0.88 6.15 -104.07 -0.64 -1.52 16 20 C -0.10 -0.80 10.04 -39.56 -0.40 -1.20 16 21 C -0.12 -0.87 10.05 -39.62 -0.40 -1.27 16 22 C -0.12 -0.89 10.05 -39.61 -0.40 -1.29 16 23 C -0.10 -0.89 10.04 -39.55 -0.40 -1.29 16 24 C -0.09 -0.89 6.15 -104.07 -0.64 -1.53 16 25 C -0.08 -0.87 6.11 -27.37 -0.17 -1.04 16 26 C 0.55 8.74 6.90 -10.98 -0.08 8.66 16 27 O -0.46 -8.25 17.72 5.59 0.10 -8.15 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 30 H 0.11 1.77 8.02 -51.93 -0.42 1.35 16 31 H 0.11 1.88 7.86 -51.93 -0.41 1.47 16 32 H 0.44 4.29 8.96 -40.82 -0.37 3.92 16 33 H 0.11 0.98 7.90 -51.93 -0.41 0.57 16 34 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.11 1.31 7.90 -51.93 -0.41 0.90 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -35.09 351.57 -8.29 -43.37 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.37 Total: 11.66 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: -4.56 Total: 15.38 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.09 Total: -56.77 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: 0.28 Total: -35.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.09 -8.29 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119693907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.516 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.98 seconds