Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48505 * 109.46797 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47117 * 300.00142 * 3 2 1 6 6 H 1.48492 * 109.47327 * 60.00572 * 3 2 1 7 7 C 1.38795 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00206 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99962 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99460 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99489 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46684 * 179.97438 * 14 13 11 16 16 N 1.46898 * 109.46764 * 180.02562 * 15 14 13 17 17 C 1.46906 * 110.99888 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46897 * 179.97438 * 17 16 15 19 19 N 1.46506 * 109.46684 * 179.97438 * 18 17 16 20 20 C 1.33871 * 122.76375 * 269.70726 * 19 18 17 21 21 O 1.21233 * 125.39881 * 359.97438 * 20 19 18 22 22 C 1.51319 * 109.20578 * 179.84332 * 20 19 18 23 23 C 1.54219 * 103.55587 * 0.39145 * 22 20 19 24 24 C 1.33878 * 122.75765 * 90.00666 * 19 18 17 25 25 O 1.21221 * 125.39936 * 359.97261 * 24 19 18 26 26 H 0.97002 * 119.99481 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47124 * 59.99798 * 10 9 7 28 28 H 1.09000 * 109.47317 * 299.99900 * 10 9 7 29 29 H 0.96999 * 120.00193 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.47089 * 60.00273 * 14 13 11 31 31 H 1.08997 * 109.47466 * 299.99640 * 14 13 11 32 32 H 1.08995 * 109.47210 * 60.00066 * 15 14 13 33 33 H 1.08997 * 109.46954 * 300.00050 * 15 14 13 34 34 H 1.00902 * 111.00533 * 56.04323 * 16 15 14 35 35 H 1.09000 * 109.47033 * 300.00113 * 17 16 15 36 36 H 1.09001 * 109.46544 * 60.00058 * 17 16 15 37 37 H 1.09000 * 109.47486 * 299.99976 * 18 17 16 38 38 H 1.09001 * 109.47362 * 60.00699 * 18 17 16 39 39 H 1.09002 * 110.79798 * 241.77935 * 22 20 19 40 40 H 1.09007 * 110.54437 * 118.88289 * 22 20 19 41 41 H 1.09001 * 110.60990 * 241.25783 * 23 22 20 42 42 H 1.09000 * 110.60673 * 118.29160 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0008 15 6 3.5026 -8.6985 -0.0009 16 7 2.9874 -10.0742 -0.0016 17 6 4.0872 -11.0482 -0.0024 18 6 3.5125 -12.4661 -0.0024 19 7 4.6094 -13.4374 -0.0038 20 6 5.1469 -13.9216 -1.1302 21 8 4.8042 -13.6268 -2.2550 22 6 6.2523 -14.8927 -0.7768 23 6 6.2536 -14.8934 0.7654 24 6 5.1526 -13.9182 1.1214 25 8 4.8162 -13.6194 2.2470 26 1 -0.4849 0.8401 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7314 -0.8905 29 1 3.8010 -6.1835 -0.0004 30 1 1.7222 -7.8752 -0.8911 31 1 1.7216 -7.8751 0.8890 32 1 4.1112 -8.5385 0.8890 33 1 4.1111 -8.5383 -0.8909 34 1 2.3680 -10.2281 -0.7831 35 1 4.6997 -10.9039 -0.8924 36 1 4.7000 -10.9048 0.8876 37 1 2.9003 -12.6102 0.8878 38 1 2.8995 -12.6098 -0.8922 39 1 7.2110 -14.5444 -1.1611 40 1 6.0249 -15.8873 -1.1607 41 1 7.2129 -14.5453 1.1484 42 1 6.0242 -15.8876 1.1488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -100.670428 kcal Electronic energy + Delta-G solvation = -23920.363173 eV Core-core repulsion = 20026.922429 eV Total energy + Delta-G solvation = -3893.440745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 9.90 seconds Orbital eigenvalues (eV) -42.44861 -39.20572 -39.13799 -37.36788 -36.38084 -34.86254 -33.61181 -32.42184 -30.68136 -29.07704 -26.81270 -26.73594 -25.45398 -23.22812 -22.98538 -22.43246 -20.36995 -20.00657 -17.93555 -17.86359 -17.56231 -17.09977 -16.55958 -16.26389 -16.04544 -15.41815 -15.25954 -14.82483 -14.80122 -14.78606 -14.52773 -14.37052 -14.18526 -14.07305 -13.75297 -13.33409 -13.08405 -12.85122 -12.55134 -12.33126 -12.06811 -11.93022 -11.75895 -11.43693 -11.21573 -11.06549 -11.01373 -10.75481 -10.62620 -10.37132 -9.80210 -9.42346 -9.07328 -8.98785 -8.89551 -8.22412 -6.49275 -6.21203 -3.91707 0.90509 1.84922 2.08663 2.96752 3.10553 3.22035 3.26849 3.31647 3.42579 3.52373 3.60221 3.74951 4.03083 4.15545 4.20793 4.33605 4.45187 4.65883 4.77827 4.80419 4.86474 4.88770 4.89330 4.96557 5.13048 5.14035 5.20775 5.21978 5.34983 5.61313 5.74717 5.87817 5.90807 6.14216 6.21266 6.38601 6.59973 6.70293 6.83602 7.16391 7.60377 7.69047 8.35971 8.61303 9.24216 10.86290 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035298 B = 0.001459 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.045254 B =19191.127208 C =19241.311440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.052 3.948 16 N -0.681 5.681 17 C 0.049 3.951 18 C 0.098 3.902 19 N -0.574 5.574 20 C 0.525 3.475 21 O -0.479 6.479 22 C -0.157 4.157 23 C -0.157 4.157 24 C 0.524 3.476 25 O -0.474 6.474 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.397 0.603 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.347 0.653 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.639 -33.282 -0.804 37.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.078 4.078 16 N -0.313 5.313 17 C -0.082 4.082 18 C -0.023 4.023 19 N -0.317 5.317 20 C 0.314 3.686 21 O -0.351 6.351 22 C -0.197 4.197 23 C -0.197 4.197 24 C 0.313 3.687 25 O -0.344 6.344 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.981 -33.194 -0.115 36.019 hybrid contribution 2.743 1.462 -0.937 3.246 sum 16.723 -31.732 -1.052 35.885 Atomic orbital electron populations 1.70035 1.05950 1.27342 1.46938 1.24997 0.95029 0.99037 0.94540 0.86110 0.79561 0.81874 0.77899 1.19640 1.20572 1.20553 1.22915 0.94954 0.91656 1.58847 0.90866 1.85415 1.04921 0.96329 1.96710 1.23528 1.06585 0.95318 1.04942 1.20299 0.86495 0.86223 0.75150 1.90710 1.15346 1.85572 1.47334 1.45889 1.09960 1.05408 1.78200 1.21128 0.95581 0.80348 1.03127 1.22093 0.96758 0.87477 1.01472 1.60189 1.18405 1.02094 1.50592 1.22178 0.93633 0.90776 1.01565 1.21724 0.88058 0.86814 1.05690 1.46738 1.34784 1.40722 1.09504 1.20899 0.83047 0.80924 0.83767 1.90813 1.63230 1.59720 1.21291 1.22483 0.99722 1.01499 0.95990 1.22490 0.99835 1.01475 0.95882 1.20890 0.83004 0.81022 0.83799 1.90827 1.63118 1.59385 1.21114 0.92232 0.89166 0.89232 0.76903 0.91689 0.90520 0.90111 0.94329 0.83439 0.94462 0.90223 0.87597 0.88709 0.86008 0.86043 0.86004 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.08 7.85 -10.98 -0.09 10.00 16 12 O -0.52 -11.96 15.86 5.56 0.09 -11.87 16 13 N -0.74 -9.91 5.56 -60.29 -0.33 -10.24 16 14 C 0.12 1.44 5.93 -4.04 -0.02 1.42 16 15 C 0.05 0.44 5.80 -3.82 -0.02 0.42 16 16 N -0.68 -5.50 6.50 -113.78 -0.74 -6.24 16 17 C 0.05 0.35 6.01 -3.82 -0.02 0.33 16 18 C 0.10 0.66 5.82 -4.04 -0.02 0.63 16 19 N -0.57 -3.37 2.55 -115.33 -0.29 -3.67 16 20 C 0.52 2.93 8.08 -11.09 -0.09 2.84 16 21 O -0.48 -4.49 17.47 5.60 0.10 -4.39 16 22 C -0.16 -0.16 7.03 -26.94 -0.19 -0.35 16 23 C -0.16 -0.16 7.03 -26.94 -0.19 -0.35 16 24 C 0.52 2.99 8.08 -11.08 -0.09 2.90 16 25 O -0.47 -4.58 17.48 5.61 0.10 -4.48 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 2.51 8.73 -39.29 -0.34 2.17 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.77 7.83 -51.93 -0.41 0.36 16 38 H 0.09 0.60 7.82 -51.93 -0.41 0.20 16 39 H 0.12 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.12 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.12 -0.05 8.14 -51.93 -0.42 -0.47 16 42 H 0.12 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -38.79 379.53 -8.30 -47.09 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.12 Total: -0.84 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.32 Total: 1.88 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.64 Total: -45.74 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.28 Total: -20.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.79 -8.30 -47.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.578 kcal (2) G-P(sol) polarization free energy of solvation -38.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.90 seconds