Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48505 * 109.46797 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47117 * 300.00142 * 3 2 1 6 6 H 1.48492 * 109.47327 * 60.00572 * 3 2 1 7 7 C 1.38795 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00206 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99962 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99460 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99489 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46684 * 179.97438 * 14 13 11 16 16 N 1.46898 * 109.46764 * 180.02562 * 15 14 13 17 17 C 1.46906 * 110.99888 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46897 * 179.97438 * 17 16 15 19 19 N 1.46506 * 109.46684 * 179.97438 * 18 17 16 20 20 C 1.33871 * 122.76375 * 269.70726 * 19 18 17 21 21 O 1.21233 * 125.39881 * 359.97438 * 20 19 18 22 22 C 1.51319 * 109.20578 * 179.84332 * 20 19 18 23 23 C 1.54219 * 103.55587 * 0.39145 * 22 20 19 24 24 C 1.33878 * 122.75765 * 90.00666 * 19 18 17 25 25 O 1.21221 * 125.39936 * 359.97261 * 24 19 18 26 26 H 0.97002 * 119.99481 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47124 * 59.99798 * 10 9 7 28 28 H 1.09000 * 109.47317 * 299.99900 * 10 9 7 29 29 H 0.96999 * 120.00193 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.47089 * 60.00273 * 14 13 11 31 31 H 1.08997 * 109.47466 * 299.99640 * 14 13 11 32 32 H 1.08995 * 109.47210 * 60.00066 * 15 14 13 33 33 H 1.08997 * 109.46954 * 300.00050 * 15 14 13 34 34 H 1.00902 * 111.00533 * 56.04323 * 16 15 14 35 35 H 1.09000 * 109.47033 * 300.00113 * 17 16 15 36 36 H 1.09001 * 109.46544 * 60.00058 * 17 16 15 37 37 H 1.09000 * 109.47486 * 299.99976 * 18 17 16 38 38 H 1.09001 * 109.47362 * 60.00699 * 18 17 16 39 39 H 1.09002 * 110.79798 * 241.77935 * 22 20 19 40 40 H 1.09007 * 110.54437 * 118.88289 * 22 20 19 41 41 H 1.09001 * 110.60990 * 241.25783 * 23 22 20 42 42 H 1.09000 * 110.60673 * 118.29160 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0008 15 6 3.5026 -8.6985 -0.0009 16 7 2.9874 -10.0742 -0.0016 17 6 4.0872 -11.0482 -0.0024 18 6 3.5125 -12.4661 -0.0024 19 7 4.6094 -13.4374 -0.0038 20 6 5.1469 -13.9216 -1.1302 21 8 4.8042 -13.6268 -2.2550 22 6 6.2523 -14.8927 -0.7768 23 6 6.2536 -14.8934 0.7654 24 6 5.1526 -13.9182 1.1214 25 8 4.8162 -13.6194 2.2470 26 1 -0.4849 0.8401 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7314 -0.8905 29 1 3.8010 -6.1835 -0.0004 30 1 1.7222 -7.8752 -0.8911 31 1 1.7216 -7.8751 0.8890 32 1 4.1112 -8.5385 0.8890 33 1 4.1111 -8.5383 -0.8909 34 1 2.3680 -10.2281 -0.7831 35 1 4.6997 -10.9039 -0.8924 36 1 4.7000 -10.9048 0.8876 37 1 2.9003 -12.6102 0.8878 38 1 2.8995 -12.6098 -0.8922 39 1 7.2110 -14.5444 -1.1611 40 1 6.0249 -15.8873 -1.1607 41 1 7.2129 -14.5453 1.1484 42 1 6.0242 -15.8876 1.1488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -132.310681 kcal Electronic energy + Delta-G solvation = -23921.735197 eV Core-core repulsion = 20026.922429 eV Total energy + Delta-G solvation = -3894.812769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 12.25 seconds Orbital eigenvalues (eV) -42.86452 -40.65627 -39.66812 -38.14063 -36.94651 -35.83155 -34.59081 -34.22952 -31.80055 -30.16062 -27.84620 -27.41900 -27.10010 -23.86750 -23.32877 -23.26493 -21.80843 -20.45843 -19.85044 -18.38296 -18.10296 -17.78963 -17.56654 -17.33030 -17.14576 -16.88582 -16.48786 -16.08666 -15.77192 -15.37327 -15.31076 -15.16976 -14.92597 -14.87043 -14.70138 -14.47956 -14.29641 -13.77569 -13.46301 -13.36397 -13.16759 -12.96656 -12.90825 -12.63470 -12.53393 -12.30496 -12.09715 -11.72247 -11.66902 -11.16401 -11.09443 -11.05372 -10.90565 -10.28175 -10.17831 -9.64754 -8.67822 -8.35373 -6.13789 0.48271 1.24959 1.41363 1.41893 1.48329 1.57966 1.58227 1.69192 2.17834 2.26925 2.98948 3.13939 3.21760 3.29487 3.35374 3.63693 3.70216 3.83492 3.86778 4.01380 4.06914 4.19658 4.26562 4.29460 4.36026 4.40849 4.49814 4.57935 4.72983 4.79958 4.84069 4.89098 4.91208 4.95495 5.35227 5.41655 5.73105 5.80405 6.19294 6.19535 6.30567 6.46271 6.72673 7.06013 7.20926 8.74190 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035298 B = 0.001459 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.045254 B =19191.127208 C =19241.311440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.712 5.712 14 C 0.125 3.875 15 C 0.064 3.936 16 N -0.689 5.689 17 C 0.060 3.940 18 C 0.097 3.903 19 N -0.578 5.578 20 C 0.520 3.480 21 O -0.524 6.524 22 C -0.142 4.142 23 C -0.142 4.142 24 C 0.519 3.481 25 O -0.522 6.522 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.417 0.583 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.352 0.648 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.270 -34.536 -1.019 40.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.367 5.367 14 C 0.001 3.999 15 C -0.065 4.065 16 N -0.322 5.322 17 C -0.070 4.070 18 C -0.025 4.025 19 N -0.321 5.321 20 C 0.312 3.688 21 O -0.398 6.398 22 C -0.181 4.181 23 C -0.181 4.181 24 C 0.311 3.689 25 O -0.395 6.395 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.255 0.745 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.171 0.829 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 17.684 -34.503 -0.334 38.773 hybrid contribution 1.630 1.708 -0.869 2.515 sum 19.314 -32.796 -1.203 38.079 Atomic orbital electron populations 1.70199 1.08010 1.28563 1.48048 1.26145 0.95970 1.03365 0.93705 0.84883 0.78596 0.76241 0.78071 1.17986 1.19928 1.19934 1.23250 0.95396 0.91942 1.58827 0.89802 1.85612 1.10646 0.99346 1.97061 1.23366 1.03552 0.94113 1.06967 1.20087 0.86184 0.86722 0.75072 1.90700 1.17501 1.86117 1.50094 1.45589 1.10421 1.04949 1.75693 1.21180 0.96810 0.79821 1.02116 1.21945 0.95264 0.86812 1.02509 1.60158 1.18918 1.02040 1.51089 1.22054 0.93148 0.90736 1.01102 1.21614 0.88654 0.87092 1.05107 1.46935 1.34468 1.40409 1.10268 1.21748 0.83414 0.80861 0.82786 1.90792 1.64790 1.61396 1.22812 1.22596 0.98576 1.01153 0.95805 1.22602 0.98640 1.01056 0.95801 1.21767 0.83366 0.80964 0.82829 1.90804 1.64780 1.61180 1.22780 0.91985 0.87040 0.87011 0.74549 0.92247 0.92126 0.89397 0.92866 0.82924 0.94440 0.90886 0.88654 0.88774 0.83749 0.83690 0.83777 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.53 19.97 7.85 87.66 0.69 20.66 16 12 O -0.57 -26.89 15.86 -3.03 -0.05 -26.94 16 13 N -0.71 -17.93 5.56 -463.05 -2.57 -20.50 16 14 C 0.13 2.84 5.93 86.38 0.51 3.35 16 15 C 0.06 1.00 5.80 86.31 0.50 1.50 16 16 N -0.69 -10.76 6.50 -513.88 -3.34 -14.10 16 17 C 0.06 0.84 6.01 86.30 0.52 1.36 16 18 C 0.10 1.33 5.82 86.38 0.50 1.83 16 19 N -0.58 -6.45 2.55 -756.64 -1.93 -8.39 16 20 C 0.52 5.13 8.08 88.00 0.71 5.84 16 21 O -0.52 -9.58 17.47 -2.88 -0.05 -9.63 16 22 C -0.14 0.20 7.03 30.46 0.21 0.41 16 23 C -0.14 0.17 7.03 30.46 0.21 0.39 16 24 C 0.52 5.36 8.08 88.00 0.71 6.07 16 25 O -0.52 -10.09 17.48 -2.85 -0.05 -10.14 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 28 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 29 H 0.42 7.34 8.47 -92.71 -0.79 6.55 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.35 4.99 8.73 -89.69 -0.78 4.20 16 35 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.49 7.83 -2.39 -0.02 1.47 16 38 H 0.09 1.26 7.82 -2.39 -0.02 1.24 16 39 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.15 -0.77 8.14 -2.38 -0.02 -0.79 16 41 H 0.14 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.15 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: -1.00 -88.87 379.53 -1.23 -90.10 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.51 Total: 12.53 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.12 Total: 7.18 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -7.56 Total: -99.14 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.15 Total: -46.71 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -88.87 -1.23 -90.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.210 kcal (2) G-P(sol) polarization free energy of solvation -88.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.25 seconds