Wall clock time and date at job start Tue Mar 31 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35635 * 124.93537 * 2 1 4 4 C 1.35468 * 107.13329 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 127.23872 * 179.97438 * 4 3 2 6 6 C 1.41551 * 105.51887 * 0.24082 * 4 3 2 7 7 C 1.47663 * 126.45810 * 179.76326 * 6 4 3 8 8 O 1.21571 * 120.00309 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99780 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00115 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47226 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47104 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00232 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47109 * 180.02562 * 13 12 11 15 15 O 1.21291 * 120.00152 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99750 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99739 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99941 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99703 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99686 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47202 * 90.00334 * 21 19 17 23 23 H 1.48506 * 109.46888 * 209.99606 * 21 19 17 24 24 H 1.48492 * 109.47536 * 329.99781 * 21 19 17 25 25 N 1.28467 * 124.93111 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47051 * 89.99788 * 1 2 3 27 27 H 1.08998 * 109.47295 * 210.00234 * 1 2 3 28 28 H 1.09003 * 109.46993 * 329.99684 * 1 2 3 29 29 H 1.07998 * 126.43625 * 0.05137 * 3 2 1 30 30 H 0.97007 * 120.00282 * 0.02562 * 9 7 6 31 31 H 1.09000 * 109.46837 * 299.99839 * 10 9 7 32 32 H 1.09003 * 109.46919 * 60.00084 * 10 9 7 33 33 H 1.08992 * 109.47353 * 300.00044 * 11 10 9 34 34 H 1.09003 * 109.46980 * 60.00272 * 11 10 9 35 35 H 1.00898 * 111.00575 * 56.04657 * 12 11 10 36 36 H 1.09000 * 109.46552 * 299.99636 * 13 12 11 37 37 H 1.08993 * 109.47210 * 59.99718 * 13 12 11 38 38 H 0.97002 * 120.00212 * 359.97438 * 16 14 13 39 39 H 0.96997 * 120.00415 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2417 1.1119 0.0000 4 6 3.5316 0.6978 -0.0006 5 17 4.9543 1.6925 -0.0015 6 6 3.4752 -0.7166 -0.0067 7 6 4.6269 -1.6407 -0.0144 8 8 5.7599 -1.1999 -0.0166 9 7 4.4220 -2.9727 -0.0191 10 6 5.5646 -3.8896 -0.0263 11 6 5.0597 -5.3338 -0.0299 12 7 6.2054 -6.2531 -0.0377 13 6 5.7578 -7.6523 -0.0420 14 6 6.9579 -8.5636 -0.0493 15 8 8.0762 -8.0939 -0.0513 16 7 6.7887 -9.9008 -0.0547 17 6 7.8805 -10.7299 -0.0608 18 1 8.8762 -10.3116 -0.0617 19 6 7.7060 -12.1084 -0.0658 20 7 6.4945 -12.6174 -0.0641 21 14 9.1937 -13.2381 -0.0748 22 1 9.5921 -13.5431 1.3228 23 1 8.8524 -14.5003 -0.7789 24 1 10.3190 -12.5691 -0.7756 25 7 2.2006 -1.0532 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.8968 2.1353 0.0008 30 1 3.5180 -3.3245 -0.0178 31 1 6.1668 -3.7126 -0.9175 32 1 6.1723 -3.7197 0.8626 33 1 4.4577 -5.5105 0.8614 34 1 4.4518 -5.5040 -0.9186 35 1 6.8197 -6.0721 0.7420 36 1 5.1608 -7.8454 0.8494 37 1 5.1546 -7.8381 -0.9305 38 1 5.8944 -10.2765 -0.0534 39 1 6.3726 -13.5797 -0.0673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128088083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:56 Heat of formation + Delta-G solvation = 9.848106 kcal Electronic energy + Delta-G solvation = -23853.528791 eV Core-core repulsion = 19859.296440 eV Total energy + Delta-G solvation = -3994.232351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.18031 -39.55050 -38.28853 -36.83170 -36.23457 -34.36210 -33.93778 -33.66316 -31.25785 -31.16980 -29.59683 -27.92438 -25.99389 -24.15401 -23.12013 -22.11170 -21.96332 -20.39905 -19.26403 -18.43027 -17.87549 -17.03578 -16.94587 -16.15555 -16.04768 -15.80837 -15.11679 -15.05914 -14.60696 -14.44469 -14.22245 -13.97468 -13.77884 -13.49098 -13.41102 -13.31552 -13.06989 -12.37344 -12.21161 -12.01847 -11.87117 -11.50245 -11.42530 -11.38484 -11.01869 -11.01272 -10.37719 -10.24146 -10.19732 -9.84965 -9.49579 -9.29658 -9.13154 -8.47692 -8.09723 -7.94887 -6.40455 -3.81118 1.07087 1.41396 1.47201 2.23077 2.87704 3.11348 3.19449 3.28075 3.34604 3.83789 3.91967 4.11008 4.15968 4.32850 4.42130 4.49037 4.69027 4.71981 4.86194 4.96428 5.03902 5.21030 5.28121 5.43851 5.48023 5.75857 5.87760 5.94548 5.98159 6.03955 6.21901 6.29002 7.09808 7.15012 7.40373 7.56844 7.61011 8.01711 8.07696 8.62569 9.19316 9.55435 10.06942 10.77312 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.001651 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.270329 B =16959.172130 C =17885.360141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.279 5.279 3 C -0.003 4.003 4 C -0.102 4.102 5 Cl -0.006 7.006 6 C 0.000 4.000 7 C 0.599 3.401 8 O -0.512 6.512 9 N -0.715 5.715 10 C 0.121 3.879 11 C 0.049 3.951 12 N -0.665 5.665 13 C 0.052 3.948 14 C 0.440 3.560 15 O -0.581 6.581 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 N -0.247 5.247 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.193 0.807 30 H 0.405 0.595 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.353 0.647 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.027 27.583 1.100 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.068 5.068 3 C -0.146 4.146 4 C -0.140 4.140 5 Cl 0.023 6.977 6 C -0.161 4.161 7 C 0.382 3.618 8 O -0.385 6.385 9 N -0.367 5.367 10 C -0.003 4.003 11 C -0.081 4.081 12 N -0.299 5.299 13 C -0.080 4.080 14 C 0.226 3.774 15 O -0.465 6.465 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 N -0.084 5.084 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.210 0.790 30 H 0.240 0.760 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.123 27.177 0.415 32.668 hybrid contribution -0.280 -0.356 0.888 0.997 sum -18.403 26.821 1.303 32.553 Atomic orbital electron populations 1.22295 0.72016 1.05976 1.05000 1.45368 1.08050 1.02657 1.50715 1.22655 0.89336 0.94285 1.08373 1.20858 0.89553 0.91136 1.12447 1.98381 1.35383 1.66890 1.97065 1.21913 0.91231 0.92591 1.10368 1.16705 0.86432 0.81439 0.77211 1.90873 1.21890 1.76833 1.48904 1.45714 1.10832 1.05281 1.74886 1.21335 0.87841 0.87349 1.03737 1.22072 0.93623 0.91265 1.01106 1.59923 1.16252 1.01923 1.51755 1.21668 0.96844 0.88170 1.01341 1.19787 0.89964 0.83135 0.84554 1.90535 1.25367 1.75379 1.55258 1.41857 1.09698 1.04081 1.64419 1.19719 0.88579 0.87050 1.47499 0.87874 1.25267 0.97911 0.97475 0.97340 1.69610 1.20777 1.13303 1.50692 0.85845 0.80982 0.79041 0.78356 1.20439 1.20942 1.19379 1.73602 1.02066 1.14036 1.18658 0.89168 0.88007 0.88191 0.79014 0.76020 0.89828 0.91018 0.94849 0.90398 0.82775 0.93712 0.89444 0.77457 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.09 11.32 59.85 0.68 0.77 16 2 N -0.28 -1.71 3.72 -67.94 -0.25 -1.96 16 3 C 0.00 -0.02 11.49 -16.86 -0.19 -0.21 16 4 C -0.10 -1.02 6.80 -39.31 -0.27 -1.29 16 5 Cl -0.01 -0.06 28.17 -51.86 -1.46 -1.52 16 6 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 7 C 0.60 7.84 7.82 -12.41 -0.10 7.74 16 8 O -0.51 -8.28 15.87 5.30 0.08 -8.19 16 9 N -0.71 -7.88 5.55 -61.31 -0.34 -8.22 16 10 C 0.12 1.46 5.93 -4.04 -0.02 1.44 16 11 C 0.05 0.59 5.80 -3.83 -0.02 0.57 16 12 N -0.67 -10.75 6.13 -115.06 -0.70 -11.45 16 13 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 14 C 0.44 10.48 7.82 -10.98 -0.09 10.39 16 15 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 16 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 21 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 N -0.25 -2.26 11.66 33.42 0.39 -1.87 16 26 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 27 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.10 -0.15 8.13 -51.93 -0.42 -0.57 16 29 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.41 3.63 8.19 -40.82 -0.33 3.30 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -36.15 362.87 -6.69 -42.84 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.73 Total: 11.33 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -0.87 Total: 11.64 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.24 Total: -61.83 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.46 Total: -1.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.15 -6.69 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128088083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.686 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds