Wall clock time and date at job start Tue Mar 31 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39927 * 125.75258 * 2 1 4 4 C 1.30411 * 108.96282 * 180.02562 * 3 2 1 5 5 C 1.41340 * 108.04633 * 0.02562 * 4 3 2 6 6 C 1.47306 * 126.43299 * 180.02562 * 5 4 3 7 7 O 1.21619 * 119.99557 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99964 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99613 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46846 * 179.97438 * 9 8 6 11 11 N 1.46906 * 109.47406 * 179.97438 * 10 9 8 12 12 C 1.46891 * 111.00342 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47434 * 180.02562 * 12 11 10 14 14 O 1.21294 * 119.99310 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00030 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99705 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99888 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99859 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99933 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46902 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47105 * 119.99918 * 20 18 16 23 23 H 1.48491 * 109.47226 * 239.99821 * 20 18 16 24 24 C 1.34356 * 125.74968 * 180.33907 * 2 1 3 25 25 Cl 1.73598 * 126.31827 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46982 * 89.97983 * 1 2 3 27 27 H 1.09002 * 109.47122 * 209.97772 * 1 2 3 28 28 H 1.09001 * 109.47357 * 329.98115 * 1 2 3 29 29 H 1.08000 * 125.97580 * 180.02562 * 4 3 2 30 30 H 0.96996 * 119.99871 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47226 * 299.99334 * 9 8 6 32 32 H 1.08999 * 109.47406 * 59.99933 * 9 8 6 33 33 H 1.08995 * 109.47938 * 299.99929 * 10 9 8 34 34 H 1.09004 * 109.47171 * 59.99908 * 10 9 8 35 35 H 1.00905 * 110.99378 * 56.04924 * 11 10 9 36 36 H 1.09010 * 109.47299 * 300.00486 * 12 11 10 37 37 H 1.09001 * 109.47346 * 60.00165 * 12 11 10 38 38 H 0.96996 * 120.00611 * 0.02562 * 15 13 12 39 39 H 0.97001 * 120.00232 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5311 0.7589 -0.0006 5 6 3.5620 -0.6542 -0.0015 6 6 4.7661 -1.5028 -0.0019 7 8 4.6563 -2.7140 -0.0032 8 7 5.9893 -0.9370 -0.0007 9 6 7.1867 -1.7810 -0.0016 10 6 8.4346 -0.8958 -0.0006 11 7 9.6354 -1.7420 -0.0009 12 6 10.8557 -0.9244 0.0007 13 6 12.0640 -1.8251 -0.0003 14 8 11.9223 -3.0298 -0.0026 15 7 13.3018 -1.2921 0.0003 16 6 14.4010 -2.1116 -0.0011 17 1 14.2749 -3.1843 -0.0031 18 6 15.6772 -1.5621 0.0001 19 7 15.8307 -0.2570 0.0031 20 14 17.1748 -2.6786 -0.0011 21 1 16.7348 -4.0969 -0.0039 22 1 17.9905 -2.4115 -1.2130 23 1 17.9897 -2.4151 1.2119 24 6 2.2499 -1.0904 -0.0065 25 17 1.7154 -2.7420 -0.0169 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 4.3909 1.4124 -0.0003 30 1 6.0768 0.0290 0.0000 31 1 7.1875 -2.4116 0.8875 32 1 7.1879 -2.4090 -0.8925 33 1 8.4338 -0.2655 -0.8898 34 1 8.4336 -0.2674 0.8901 35 1 9.6280 -2.3798 -0.7828 36 1 10.8720 -0.2942 -0.8886 37 1 10.8711 -0.2963 0.8914 38 1 13.4152 -0.3288 0.0018 39 1 16.7216 0.1266 0.0036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130305796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:01 Heat of formation + Delta-G solvation = 6.560834 kcal Electronic energy + Delta-G solvation = -23843.160881 eV Core-core repulsion = 19848.785983 eV Total energy + Delta-G solvation = -3994.374898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.94022 -39.40591 -38.29374 -37.37692 -36.23234 -34.41302 -34.02085 -33.66178 -31.23677 -30.85452 -29.42917 -27.66446 -25.95425 -24.08408 -23.05719 -22.15537 -21.54340 -20.49560 -19.27488 -18.54699 -17.88655 -16.69430 -16.52978 -16.13808 -16.09845 -15.80208 -15.22443 -15.03201 -14.57859 -14.48040 -14.07815 -13.90851 -13.80210 -13.45080 -13.35778 -13.27129 -13.08041 -12.51039 -12.37469 -12.25945 -11.89396 -11.50970 -11.43866 -11.39319 -11.29628 -11.04042 -10.33231 -10.21961 -10.09468 -10.04676 -9.51436 -9.35587 -9.06211 -8.48743 -8.10925 -7.95707 -6.41338 -3.82028 0.78238 0.83436 1.60825 1.95506 2.94014 3.14982 3.17376 3.28102 3.35731 3.77564 3.91114 4.14324 4.31625 4.41808 4.46766 4.49032 4.68667 4.78433 4.84890 5.00031 5.09720 5.20169 5.27451 5.42488 5.67951 5.74711 5.87957 5.89464 5.93984 5.98275 6.22587 6.29419 6.80272 7.12155 7.33813 7.56271 7.59496 8.07107 8.09110 8.61634 9.18635 9.54655 10.06023 10.76468 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.040050 B = 0.001595 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.951557 B =17553.375344 C =18219.251987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.354 5.354 3 N -0.274 5.274 4 C 0.091 3.909 5 C -0.270 4.270 6 C 0.591 3.409 7 O -0.530 6.530 8 N -0.723 5.723 9 C 0.123 3.877 10 C 0.049 3.951 11 N -0.666 5.666 12 C 0.052 3.948 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.183 3.817 25 Cl 0.032 6.968 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.200 0.800 30 H 0.398 0.602 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.353 0.647 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.200 6.708 -0.868 31.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.136 5.136 3 N -0.095 5.095 4 C -0.097 4.097 5 C -0.286 4.286 6 C 0.377 3.623 7 O -0.406 6.406 8 N -0.375 5.375 9 C 0.000 4.000 10 C -0.081 4.081 11 N -0.299 5.299 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C 0.024 3.976 25 Cl 0.061 6.939 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.217 0.783 30 H 0.232 0.768 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.189 5.865 -0.186 32.720 hybrid contribution 1.356 0.286 -0.903 1.655 sum -30.833 6.151 -1.089 31.459 Atomic orbital electron populations 1.22136 0.72789 1.05592 1.04586 1.48576 1.07591 1.02307 1.55158 1.77358 1.02003 1.05373 1.24722 1.24061 0.95598 0.93280 0.96716 1.19915 0.91959 0.93839 1.22927 1.16972 0.81939 0.86960 0.76432 1.90848 1.86523 1.13592 1.49650 1.45604 1.05375 1.10308 1.76233 1.21276 0.82029 0.93135 1.03598 1.22086 0.89823 0.95169 1.01044 1.59925 0.99559 1.18797 1.51606 1.21669 0.89827 0.95183 1.01338 1.19790 0.84070 0.89042 0.84553 1.90537 1.85816 1.14942 1.55268 1.41862 1.04272 1.09523 1.64399 1.19772 0.83391 0.92263 1.47426 0.87818 1.25262 0.99143 0.96229 0.97326 1.69617 1.24015 1.09980 1.50736 0.85793 0.80678 0.80164 0.77676 1.19191 1.20796 1.20749 1.22105 0.90762 0.84311 1.00437 1.98470 1.89833 1.09502 1.96144 0.89545 0.88792 0.87999 0.78311 0.76833 0.90017 0.91212 0.94880 0.90424 0.82781 0.93713 0.89448 0.77460 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.27 59.84 0.67 0.98 16 2 N -0.35 -2.72 3.98 -64.32 -0.26 -2.98 16 3 N -0.27 -2.34 12.49 30.87 0.39 -1.95 16 4 C 0.09 0.67 11.50 -16.98 -0.20 0.47 16 5 C -0.27 -2.62 6.13 -105.02 -0.64 -3.26 16 6 C 0.59 6.82 7.81 -12.57 -0.10 6.72 16 7 O -0.53 -8.01 15.64 5.26 0.08 -7.93 16 8 N -0.72 -6.65 5.55 -61.43 -0.34 -6.99 16 9 C 0.12 1.37 5.93 -4.05 -0.02 1.35 16 10 C 0.05 0.54 5.80 -3.82 -0.02 0.51 16 11 N -0.67 -10.37 6.13 -115.05 -0.70 -11.07 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 14 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 15 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 20 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.18 1.70 7.53 -16.43 -0.12 1.58 16 25 Cl 0.03 0.29 27.35 -51.86 -1.42 -1.13 16 26 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 0.20 7.78 -51.93 -0.40 -0.21 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.20 0.69 7.50 -52.49 -0.39 0.29 16 30 H 0.40 2.36 7.42 -40.82 -0.30 2.06 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 36 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -35.87 360.92 -6.52 -42.39 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.65 Total: 10.46 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -0.79 Total: 11.45 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.25 Total: -60.98 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.42 Total: -1.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.87 -6.52 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130305796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.955 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds