Wall clock time and date at job start Tue Mar 31 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34601 * 126.49285 * 2 1 4 4 Cl 1.73599 * 125.43218 * 359.97438 * 3 2 1 5 5 N 1.31018 * 109.12932 * 179.97438 * 3 2 1 6 6 C 1.33303 * 109.70577 * 359.97438 * 5 3 2 7 7 C 1.36671 * 107.82832 * 359.97438 * 6 5 3 8 8 C 1.46665 * 126.83903 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99981 * 174.46886 * 8 7 6 10 10 N 1.34775 * 120.00134 * 354.47262 * 8 7 6 11 11 C 1.46496 * 120.00147 * 185.12215 * 10 8 7 12 12 C 1.53004 * 109.47361 * 179.97438 * 11 10 8 13 13 N 1.46895 * 109.47104 * 180.02562 * 12 11 10 14 14 C 1.46907 * 110.99795 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.46990 * 180.02562 * 14 13 12 16 16 O 1.21294 * 120.00115 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00186 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00726 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99533 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00561 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99841 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47357 * 90.00389 * 22 20 18 24 24 H 1.48501 * 109.47236 * 210.00500 * 22 20 18 25 25 H 1.48507 * 109.47244 * 330.00148 * 22 20 18 26 26 H 1.09001 * 109.46978 * 274.32121 * 1 2 3 27 27 H 1.08999 * 109.46769 * 34.32322 * 1 2 3 28 28 H 1.08996 * 109.46832 * 154.32171 * 1 2 3 29 29 H 1.08000 * 126.08323 * 180.26000 * 6 5 3 30 30 H 0.97005 * 119.99832 * 5.11923 * 10 8 7 31 31 H 1.08999 * 109.47359 * 299.99718 * 11 10 8 32 32 H 1.08999 * 109.47226 * 60.00080 * 11 10 8 33 33 H 1.08999 * 109.46872 * 300.00284 * 12 11 10 34 34 H 1.08999 * 109.46666 * 60.00006 * 12 11 10 35 35 H 1.00898 * 111.00539 * 56.05012 * 13 12 11 36 36 H 1.08999 * 109.46895 * 299.99607 * 14 13 12 37 37 H 1.09000 * 109.47318 * 59.99569 * 14 13 12 38 38 H 0.97007 * 119.99718 * 359.97438 * 17 15 14 39 39 H 0.96998 * 119.99789 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0821 0.0000 4 17 1.7269 2.7324 -0.0006 5 7 3.5160 0.6911 0.0006 6 6 3.5705 -0.6408 0.0015 7 6 2.2876 -1.1121 0.0021 8 6 1.8669 -2.5171 0.0027 9 8 0.6875 -2.7991 0.1048 10 7 2.7865 -3.4959 -0.1098 11 6 2.3595 -4.8928 -0.2222 12 6 3.5901 -5.7947 -0.3371 13 7 3.1618 -7.1952 -0.4505 14 6 4.3198 -8.0924 -0.5623 15 6 3.8421 -9.5170 -0.6771 16 8 2.6541 -9.7611 -0.6663 17 7 4.7351 -10.5200 -0.7917 18 6 4.3007 -11.8161 -0.8956 19 1 3.2428 -12.0336 -0.8851 20 6 5.2213 -12.8502 -1.0133 21 7 4.8048 -14.0925 -1.1133 22 14 7.0510 -12.4742 -1.0306 23 1 7.5746 -12.4988 0.3588 24 1 7.7585 -13.4952 -1.8444 25 1 7.2745 -11.1296 -1.6202 26 1 -0.3633 0.0774 1.0248 27 1 -0.3633 0.8487 -0.5795 28 1 -0.3633 -0.9262 -0.4453 29 1 4.4686 -1.2407 0.0061 30 1 3.7311 -3.2755 -0.1164 31 1 1.7868 -5.1700 0.6628 32 1 1.7378 -5.0124 -1.1095 33 1 4.1624 -5.5173 -1.2223 34 1 4.2121 -5.6752 0.5499 35 1 2.5318 -7.3189 -1.2288 36 1 4.8977 -7.8308 -1.4486 37 1 4.9464 -7.9890 0.3236 38 1 5.6852 -10.3247 -0.8007 39 1 5.4475 -14.8143 -1.1959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131332497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:10 Heat of formation + Delta-G solvation = -1.939378 kcal Electronic energy + Delta-G solvation = -23953.930405 eV Core-core repulsion = 19959.186910 eV Total energy + Delta-G solvation = -3994.743495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -42.84835 -39.76930 -38.54333 -37.59971 -36.53837 -35.01720 -34.36643 -33.85391 -31.70926 -31.05545 -29.11903 -27.73915 -26.29689 -24.19791 -23.28640 -22.41706 -21.87735 -20.61870 -19.44358 -18.66917 -18.34999 -17.04520 -16.88981 -16.48952 -16.26911 -15.91812 -15.30318 -15.24445 -14.95428 -14.82695 -14.24267 -14.03925 -13.84044 -13.75742 -13.52502 -13.32873 -13.11619 -12.64783 -12.42130 -12.33245 -12.19825 -11.94304 -11.65987 -11.61568 -11.18134 -11.03184 -10.62346 -10.47770 -10.39995 -10.00236 -9.60549 -9.56676 -9.11062 -8.67588 -8.29554 -8.20684 -6.33649 -3.85420 0.59074 0.62420 2.01435 2.07368 2.72756 2.79340 2.99628 3.04627 3.13092 3.69384 3.91812 4.07062 4.11106 4.14829 4.33526 4.62942 4.63688 4.72000 4.74270 4.94676 4.98854 5.18511 5.23754 5.34256 5.51428 5.65055 5.71105 5.72137 5.75470 5.86840 5.95602 6.04572 6.87730 6.95461 7.07665 7.41297 7.54780 7.66765 8.11352 8.56367 8.92037 9.39158 9.78681 10.79380 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.001582 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.806180 B =17699.820966 C =18356.867174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.411 5.411 3 C 0.260 3.740 4 Cl 0.044 6.956 5 N -0.467 5.467 6 C 0.050 3.950 7 C -0.067 4.067 8 C 0.596 3.404 9 O -0.536 6.536 10 N -0.712 5.712 11 C 0.123 3.877 12 C 0.048 3.952 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.448 3.552 16 O -0.564 6.564 17 N -0.589 5.589 18 C -0.307 4.307 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.881 3.119 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.191 0.809 30 H 0.403 0.597 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.354 0.646 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.371 0.629 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 32.939 1.323 32.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.095 5.095 3 C -0.026 4.026 4 Cl 0.072 6.928 5 N -0.188 5.188 6 C -0.105 4.105 7 C -0.185 4.185 8 C 0.382 3.618 9 O -0.414 6.414 10 N -0.364 5.364 11 C -0.001 4.001 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.234 3.766 16 O -0.446 6.446 17 N -0.229 5.229 18 C -0.435 4.435 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.208 0.792 30 H 0.238 0.762 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.174 0.826 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.203 0.797 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.446 32.888 2.033 33.041 hybrid contribution 1.558 0.118 -0.923 1.815 sum -0.888 33.006 1.109 33.036 Atomic orbital electron populations 1.22478 0.74267 1.06494 1.04986 1.45065 1.08715 1.04383 1.51309 1.23257 0.86611 0.84657 1.08109 1.98444 1.88645 1.08677 1.97029 1.70080 1.16134 1.12622 1.20007 1.22707 0.95585 0.90130 1.02114 1.20776 0.91080 0.88558 1.18072 1.16552 0.85667 0.82736 0.76893 1.90843 1.16906 1.83729 1.49881 1.45484 1.09640 1.06701 1.74527 1.21360 0.97187 0.77723 1.03804 1.22085 0.95871 0.88892 1.01327 1.59903 1.16464 1.02018 1.51469 1.21703 0.92662 0.92616 1.01298 1.19662 0.87019 0.85770 0.84177 1.90579 1.16075 1.83954 1.53955 1.42194 1.07095 1.07131 1.66442 1.19439 0.96856 0.79596 1.47631 0.86252 1.25045 0.98534 0.94986 0.97572 1.69622 1.34915 0.98724 1.48735 0.86662 0.85268 0.78438 0.78926 1.19574 1.20178 1.19541 0.89273 0.89111 0.86791 0.79245 0.76167 0.89584 0.90909 0.94645 0.90187 0.82585 0.93523 0.89251 0.79674 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.53 59.85 0.63 0.99 16 2 N -0.41 -3.47 3.18 -118.36 -0.38 -3.85 16 3 C 0.26 2.29 8.48 -90.34 -0.77 1.53 16 4 Cl 0.04 0.30 28.83 -51.86 -1.50 -1.20 16 5 N -0.47 -4.56 11.21 -11.49 -0.13 -4.69 16 6 C 0.05 0.38 11.37 -17.48 -0.20 0.18 16 7 C -0.07 -0.59 6.91 -82.10 -0.57 -1.16 16 8 C 0.60 5.80 7.77 -12.86 -0.10 5.70 16 9 O -0.54 -6.89 14.87 5.20 0.08 -6.81 16 10 N -0.71 -5.32 5.54 -61.63 -0.34 -5.66 16 11 C 0.12 1.14 5.94 -4.04 -0.02 1.11 16 12 C 0.05 0.44 5.80 -3.83 -0.02 0.42 16 13 N -0.67 -9.24 6.13 -115.06 -0.70 -9.94 16 14 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 15 C 0.45 9.82 7.82 -10.99 -0.09 9.73 16 16 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 17 N -0.59 -13.66 5.09 -10.97 -0.06 -13.71 16 18 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 19 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.45 13.96 55.50 0.77 -24.67 16 22 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.35 7.92 -51.93 -0.41 -0.06 16 28 H 0.11 0.84 6.39 -51.93 -0.33 0.50 16 29 H 0.19 0.75 7.46 -52.49 -0.39 0.36 16 30 H 0.40 1.79 7.42 -40.82 -0.30 1.49 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.35 5.15 8.43 -39.29 -0.33 4.82 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -35.81 355.58 -7.45 -43.26 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.52 Total: 10.86 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.41 Total: 11.56 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.83 Total: -62.53 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.16 Total: -21.55 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.50 Total: -1.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.81 -7.45 -43.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131332497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.325 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds