Wall clock time and date at job start Tue Mar 31 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86808 * 119.99709 * 2 1 4 4 H 1.48496 * 109.46984 * 239.99503 * 3 2 1 5 5 H 1.48493 * 109.47269 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46668 * 120.00054 * 3 2 1 7 7 C 1.38943 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00199 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99920 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47280 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99566 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.46992 * 179.97438 * 19 17 16 21 21 C 1.35048 * 126.03665 * 124.99929 * 20 19 17 22 22 C 1.35374 * 107.73000 * 179.97438 * 21 20 19 23 23 Cl 1.73604 * 126.04389 * 179.97438 * 22 21 20 24 24 C 1.39921 * 107.90738 * 359.97438 * 22 21 20 25 25 N 1.30855 * 108.21413 * 359.75819 * 24 22 21 26 26 H 0.97005 * 119.99794 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99465 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.47029 * 60.00037 * 12 10 9 29 29 H 1.09003 * 109.46949 * 299.99857 * 12 10 9 30 30 H 1.00898 * 110.99612 * 303.95183 * 13 12 10 31 31 H 1.09001 * 109.46901 * 59.99571 * 14 13 12 32 32 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 33 33 H 1.09001 * 109.46832 * 59.99813 * 15 14 13 34 34 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 35 35 H 0.96995 * 120.00423 * 359.97438 * 16 15 14 36 36 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 37 37 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 38 38 H 1.08005 * 126.13346 * 359.94591 * 21 20 19 39 39 H 1.07999 * 125.89618 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 1.4983 -7.2708 0.0016 15 6 2.5232 -8.4068 0.0015 16 7 1.8248 -9.6945 0.0020 17 6 2.5296 -10.8433 0.0026 18 8 3.7420 -10.8110 0.0021 19 6 1.8112 -12.1681 0.0026 20 7 2.7926 -13.2558 0.0026 21 6 2.8598 -14.2652 0.8972 22 6 3.9015 -15.0564 0.5485 23 17 4.4159 -16.4923 1.3776 24 6 4.4903 -14.5121 -0.5982 25 7 3.8230 -13.4362 -0.9291 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6169 -4.9208 -0.8886 29 1 0.6176 -4.9204 0.8914 30 1 2.8333 -5.9127 -0.7798 31 1 0.8736 -7.3453 -0.8886 32 1 0.8731 -7.3451 0.8914 33 1 3.1481 -8.3323 0.8914 34 1 3.1480 -8.3323 -0.8886 35 1 0.8552 -9.7205 0.0028 36 1 1.1860 -12.2424 0.8924 37 1 1.1866 -12.2428 -0.8876 38 1 2.2010 -14.4143 1.7399 39 1 5.3455 -14.9128 -1.1220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134473745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:33 Heat of formation + Delta-G solvation = 11.531661 kcal Electronic energy + Delta-G solvation = -23550.106904 eV Core-core repulsion = 19555.947557 eV Total energy + Delta-G solvation = -3994.159347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75515 -39.89726 -38.36426 -36.80378 -36.41836 -34.50395 -33.88021 -33.71662 -31.27893 -30.58320 -29.78819 -27.79316 -25.89616 -23.96972 -22.43504 -21.96952 -21.64959 -20.73682 -19.33220 -18.11463 -17.90465 -17.72378 -16.51118 -16.16427 -16.02766 -15.76146 -15.23980 -14.86833 -14.73317 -14.57413 -14.22146 -14.12440 -13.86077 -13.67724 -13.48963 -13.21732 -13.01425 -12.43866 -12.11461 -11.98655 -11.77817 -11.57940 -11.52212 -11.49403 -11.03775 -10.88657 -10.53760 -10.46219 -10.24351 -9.87117 -9.53369 -9.44299 -8.85464 -8.55618 -8.19022 -8.00059 -6.45002 -3.85995 1.22350 1.46745 2.14351 2.22486 2.30686 2.66902 3.18427 3.24329 3.28948 3.85844 3.94070 4.05452 4.15113 4.22601 4.36342 4.41469 4.53621 4.75915 4.89882 5.00278 5.11917 5.16632 5.22119 5.28979 5.65617 5.71717 5.80363 5.88134 5.93258 5.99415 6.20015 6.24668 6.97753 7.07057 7.11596 7.49616 7.52211 7.76463 8.02366 8.57259 9.14404 9.49955 10.01288 10.72534 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.051994 B = 0.001369 C = 0.001353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.393346 B =20450.809684 C =20693.319308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.121 3.879 16 N -0.725 5.725 17 C 0.497 3.503 18 O -0.505 6.505 19 C 0.118 3.882 20 N -0.356 5.356 21 C 0.072 3.928 22 C -0.184 4.184 23 Cl -0.043 7.043 24 C 0.061 3.939 25 N -0.250 5.250 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.353 0.647 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.184 0.816 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 -30.508 0.789 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.002 4.002 16 N -0.379 5.379 17 C 0.280 3.720 18 O -0.378 6.378 19 C -0.008 4.008 20 N -0.138 5.138 21 C -0.074 4.074 22 C -0.222 4.222 23 Cl -0.015 7.015 24 C -0.127 4.127 25 N -0.070 5.070 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.173 0.827 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.148 0.852 37 H 0.138 0.862 38 H 0.201 0.799 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.338 -29.309 0.709 29.410 hybrid contribution -1.050 0.083 -0.167 1.066 sum -3.388 -29.225 0.542 29.426 Atomic orbital electron populations 1.69603 1.05947 1.28307 1.50454 1.25259 0.95636 0.99737 0.97192 0.85907 0.78767 0.80372 0.79127 1.19892 1.20956 1.19844 1.19671 0.93398 0.82222 1.47785 0.87922 1.41843 1.09183 1.04577 1.64267 1.19765 0.88403 0.84690 0.84744 1.90539 1.13718 1.87004 1.55367 1.21668 0.94188 0.90802 1.01329 1.59942 1.18857 0.99418 1.51682 1.22072 0.95477 0.89430 1.01053 1.21317 0.94987 0.80230 1.03678 1.45795 1.10342 1.05770 1.76027 1.20408 0.88488 0.85309 0.77800 1.90843 1.13292 1.86849 1.46802 1.21546 0.88954 0.83494 1.06764 1.47804 1.24935 1.19721 1.21365 1.22215 0.99570 0.89432 0.96231 1.20752 1.02899 0.97003 1.01584 1.98333 1.90266 1.35403 1.77530 1.23956 1.00351 0.92947 0.95478 1.77665 0.99514 1.17242 1.12605 0.91798 0.77457 0.93680 0.89456 0.82734 0.94847 0.90411 0.90040 0.91121 0.76490 0.85241 0.86238 0.79852 0.79119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 10 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 11 O -0.58 -15.72 15.78 5.54 0.09 -15.63 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.05 6.13 -115.06 -0.70 -10.76 16 14 C 0.05 0.51 5.80 -3.83 -0.02 0.48 16 15 C 0.12 1.24 5.93 -4.04 -0.02 1.22 16 16 N -0.73 -5.15 5.56 -60.30 -0.33 -5.48 16 17 C 0.50 4.53 7.86 -10.98 -0.09 4.45 16 18 O -0.50 -7.45 15.72 5.56 0.09 -7.36 16 19 C 0.12 0.59 6.99 -5.19 -0.04 0.55 16 20 N -0.36 -3.01 3.40 -62.50 -0.21 -3.22 16 21 C 0.07 0.50 11.43 -17.16 -0.20 0.31 16 22 C -0.18 -1.53 6.65 -39.97 -0.27 -1.79 16 23 Cl -0.04 -0.33 29.30 -51.86 -1.52 -1.84 16 24 C 0.06 0.57 12.02 -17.34 -0.21 0.36 16 25 N -0.25 -2.84 11.66 30.64 0.36 -2.49 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 31 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 1.34 8.47 -40.82 -0.35 0.99 16 36 H 0.13 0.10 8.07 -51.93 -0.42 -0.32 16 37 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.18 0.58 8.06 -52.48 -0.42 0.16 16 39 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -37.35 364.05 -7.04 -44.39 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.73 Total: 10.04 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.20 Total: 8.52 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.23 Total: -59.46 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.52 Total: -1.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.35 -7.04 -44.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134473745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.922 kcal (2) G-P(sol) polarization free energy of solvation -37.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds