Wall clock time and date at job start Tue Mar 31 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34238 * 125.74057 * 2 1 4 4 C 1.38068 * 107.44058 * 179.97438 * 3 2 1 5 5 C 1.47386 * 126.42245 * 179.97438 * 4 3 2 6 6 O 1.21610 * 119.99819 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99922 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99614 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46851 * 179.97438 * 8 7 5 10 10 N 1.46906 * 109.47414 * 179.97438 * 9 8 7 11 11 C 1.46892 * 111.00349 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47437 * 179.97438 * 11 10 9 13 13 O 1.21294 * 119.99288 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00029 * 179.97438 * 12 11 10 15 15 C 1.37094 * 119.99699 * 180.02562 * 14 12 11 16 16 H 1.08007 * 120.00332 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00418 * 180.02562 * 15 14 12 18 18 N 1.31422 * 119.99370 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00498 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47004 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47115 * 119.99915 * 19 17 15 22 22 H 1.48504 * 109.47031 * 239.99672 * 19 17 15 23 23 C 1.41395 * 107.15241 * 0.26153 * 4 3 2 24 24 Cl 1.73600 * 126.00140 * 179.71823 * 23 4 3 25 25 N 1.30532 * 107.99170 * 359.55557 * 23 4 3 26 26 H 1.09006 * 109.47146 * 90.00209 * 1 2 3 27 27 H 1.09006 * 109.47527 * 210.00335 * 1 2 3 28 28 H 1.08996 * 109.47535 * 330.00273 * 1 2 3 29 29 H 1.08001 * 126.27688 * 0.02562 * 3 2 1 30 30 H 0.96996 * 119.99887 * 359.97438 * 7 5 4 31 31 H 1.09000 * 109.47287 * 299.99298 * 8 7 5 32 32 H 1.09002 * 109.47320 * 59.99900 * 8 7 5 33 33 H 1.09001 * 109.47671 * 299.99654 * 9 8 7 34 34 H 1.09006 * 109.47297 * 59.99934 * 9 8 7 35 35 H 1.00903 * 110.99704 * 56.04046 * 10 9 8 36 36 H 1.09007 * 109.46949 * 299.99926 * 11 10 9 37 37 H 1.09004 * 109.47703 * 59.99627 * 11 10 9 38 38 H 0.97001 * 120.00112 * 0.02562 * 14 12 11 39 39 H 0.96998 * 119.99276 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5599 0.6560 0.0006 5 6 4.7631 1.5073 0.0003 6 8 5.8677 0.9986 0.0013 7 7 4.6391 2.8493 -0.0002 8 6 5.8351 3.6953 -0.0010 9 6 5.4183 5.1675 -0.0020 10 7 6.6176 6.0159 -0.0023 11 6 6.2553 7.4395 -0.0026 12 6 7.5084 8.2768 -0.0022 13 8 8.5962 7.7402 -0.0013 14 7 7.4202 9.6216 -0.0030 15 6 8.5602 10.3832 -0.0032 16 1 9.5288 9.9056 -0.0023 17 6 8.4694 11.7698 -0.0034 18 7 7.2907 12.3510 -0.0039 19 14 10.0226 12.8075 -0.0029 20 1 11.2119 11.9184 -0.0017 21 1 10.0458 13.6644 -1.2156 22 1 10.0448 13.6648 1.2095 23 6 3.5316 -0.7576 -0.0052 24 17 4.9153 -1.8059 -0.0139 25 7 2.2823 -1.1359 0.0006 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9156 2.1168 0.0004 30 1 3.7580 3.2549 -0.0006 31 1 6.4288 3.4861 0.8888 32 1 6.4280 3.4853 -0.8912 33 1 4.8248 5.3766 -0.8920 34 1 4.8251 5.3778 0.8880 35 1 7.2168 5.7947 -0.7834 36 1 5.6677 7.6647 -0.8927 37 1 5.6677 7.6652 0.8873 38 1 6.5503 10.0507 -0.0033 39 1 7.2274 13.3189 -0.0037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147490294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:31 Heat of formation + Delta-G solvation = 7.737438 kcal Electronic energy + Delta-G solvation = -23828.549398 eV Core-core repulsion = 19834.225522 eV Total energy + Delta-G solvation = -3994.323876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.95785 -39.41035 -38.31603 -37.05643 -36.24967 -34.36016 -33.79428 -33.74387 -31.40978 -31.19487 -29.19597 -27.60075 -26.01740 -24.10698 -23.06275 -22.18545 -21.56653 -20.49914 -19.30306 -18.43192 -17.89526 -16.71704 -16.45480 -16.13196 -16.00327 -15.82391 -15.52721 -15.04755 -14.57935 -14.45892 -14.03163 -14.00026 -13.90567 -13.57009 -13.36009 -13.33897 -13.12746 -12.39983 -12.07390 -11.97143 -11.90886 -11.52933 -11.46427 -11.42274 -11.15378 -11.05623 -10.34588 -10.23555 -10.07882 -9.92959 -9.53194 -9.37183 -9.10580 -8.51106 -8.13593 -7.97578 -6.43208 -3.83826 0.89132 1.00438 1.49709 2.19687 2.92098 3.14997 3.15998 3.26852 3.34561 3.81091 3.88922 4.01777 4.12064 4.39226 4.45761 4.54757 4.67819 4.75089 4.80606 4.94308 5.01931 5.17451 5.25250 5.37386 5.40198 5.71346 5.85120 5.91021 5.95557 6.06873 6.20022 6.26842 6.74708 7.09314 7.31197 7.54666 7.56621 8.05230 8.08657 8.59688 9.16876 9.52621 10.03980 10.74615 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.001646 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.746613 B =17003.701324 C =17933.360957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.349 5.349 3 C 0.110 3.890 4 C -0.274 4.274 5 C 0.590 3.410 6 O -0.522 6.522 7 N -0.727 5.727 8 C 0.122 3.878 9 C 0.050 3.950 10 N -0.666 5.666 11 C 0.053 3.947 12 C 0.440 3.560 13 O -0.581 6.581 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.172 3.828 24 Cl 0.036 6.964 25 N -0.284 5.284 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.193 0.807 30 H 0.395 0.605 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.353 0.647 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.309 -22.132 -0.865 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.128 5.128 3 C -0.041 4.041 4 C -0.290 4.290 5 C 0.376 3.624 6 O -0.398 6.398 7 N -0.379 5.379 8 C -0.001 4.001 9 C -0.080 4.080 10 N -0.299 5.299 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.465 6.465 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.021 4.021 24 Cl 0.064 6.936 25 N -0.109 5.109 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.210 0.790 30 H 0.228 0.772 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.173 0.827 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.530 -23.773 -0.180 30.767 hybrid contribution -0.183 1.889 -0.902 2.102 sum -19.713 -21.884 -1.083 29.474 Atomic orbital electron populations 1.22139 0.72404 1.05564 1.04462 1.48217 1.07298 1.03122 1.54182 1.23157 0.89666 0.94181 0.97124 1.20188 0.93417 0.92496 1.22866 1.17036 0.87498 0.81400 0.76488 1.90853 1.26276 1.73531 1.49143 1.45681 1.09952 1.05635 1.76629 1.21281 0.86770 0.88384 1.03681 1.22081 0.93239 0.91825 1.00902 1.59918 1.15584 1.02675 1.51712 1.21667 0.97036 0.88010 1.01284 1.19786 0.90038 0.83074 0.84591 1.90540 1.28783 1.71948 1.55231 1.41860 1.09627 1.04164 1.64404 1.19770 0.87733 0.87912 1.47386 0.87807 1.25271 0.98298 0.97114 0.97327 1.69624 1.23039 1.10955 1.50765 0.85789 0.81360 0.79456 0.77685 1.19177 1.20781 1.20745 1.22716 0.89566 0.90293 0.99513 1.98445 1.34246 1.64544 1.96392 1.77285 1.00132 1.07432 1.26069 0.89655 0.88426 0.88389 0.79015 0.77181 0.89976 0.91172 0.94978 0.90511 0.82731 0.93740 0.89480 0.77473 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.13 11.44 59.84 0.68 0.81 16 2 N -0.35 -2.14 3.98 -67.60 -0.27 -2.41 16 3 C 0.11 0.61 10.99 -16.56 -0.18 0.43 16 4 C -0.27 -2.65 6.13 -105.04 -0.64 -3.29 16 5 C 0.59 6.80 7.81 -12.54 -0.10 6.71 16 6 O -0.52 -8.11 15.72 5.27 0.08 -8.03 16 7 N -0.73 -6.37 5.54 -61.40 -0.34 -6.71 16 8 C 0.12 1.33 5.93 -4.04 -0.02 1.31 16 9 C 0.05 0.53 5.80 -3.82 -0.02 0.50 16 10 N -0.67 -10.20 6.12 -115.05 -0.70 -10.91 16 11 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 12 C 0.44 10.22 7.82 -10.98 -0.09 10.14 16 13 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 14 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 15 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 16 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 17 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 18 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 19 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.17 1.92 7.88 -16.90 -0.13 1.79 16 24 Cl 0.04 0.42 28.00 -51.86 -1.45 -1.04 16 25 N -0.28 -2.85 12.50 33.18 0.41 -2.44 16 26 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.10 -0.13 8.14 -51.93 -0.42 -0.56 16 29 H 0.19 0.13 7.46 -52.49 -0.39 -0.26 16 30 H 0.39 2.01 7.39 -40.82 -0.30 1.70 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 36 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -37.02 361.94 -6.52 -43.54 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.66 Total: 8.69 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -0.78 Total: 11.28 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.23 Total: -60.19 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -1.45 Total: -1.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.02 -6.52 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147490294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.280 kcal (2) G-P(sol) polarization free energy of solvation -37.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds