Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.46909 * 180.02562 * 16 15 14 18 18 C 1.46901 * 110.99586 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.52799 * 324.99822 * 18 17 16 20 20 C 1.53245 * 109.51992 * 204.87575 * 18 17 16 21 21 C 1.53241 * 108.56692 * 184.48151 * 20 18 17 22 22 C 1.50587 * 109.16456 * 55.61564 * 21 20 18 23 23 O 1.21228 * 119.36657 * 150.92763 * 22 21 20 24 24 N 1.34147 * 121.27753 * 330.90513 * 22 21 20 25 25 C 1.34214 * 122.60619 * 0.47784 * 24 22 21 26 26 O 1.21222 * 119.41159 * 179.51328 * 25 24 22 27 27 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 29 29 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 30 30 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 31 31 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 32 32 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 33 33 H 1.08999 * 109.47369 * 300.00444 * 15 14 13 34 34 H 1.09009 * 109.46793 * 59.99447 * 15 14 13 35 35 H 1.08994 * 109.47451 * 300.00251 * 16 15 14 36 36 H 1.09003 * 109.47234 * 60.00586 * 16 15 14 37 37 H 1.00895 * 111.00125 * 303.95439 * 17 16 15 38 38 H 1.09009 * 109.62173 * 304.20097 * 20 18 17 39 39 H 1.08995 * 109.62602 * 64.57069 * 20 18 17 40 40 H 1.09005 * 109.52522 * 175.51676 * 21 20 18 41 41 H 1.08996 * 109.52273 * 295.70609 * 21 20 18 42 42 H 0.97000 * 118.70508 * 180.54789 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 2.9656 -10.1313 -0.0457 17 7 4.0909 -11.0756 -0.0499 18 6 3.6125 -12.4645 -0.0572 19 1 2.6980 -12.5380 0.5313 20 6 4.6845 -13.3784 0.5463 21 6 4.2115 -14.8310 0.4256 22 6 3.9033 -15.1323 -1.0173 23 8 4.0306 -16.2657 -1.4283 24 7 3.4900 -14.1709 -1.8566 25 6 3.3354 -12.8939 -1.4737 26 8 2.9671 -12.0701 -2.2832 27 1 -0.4849 0.8401 0.0004 28 1 3.1244 -3.7267 -0.9039 29 1 3.1244 -3.7361 0.8761 30 1 3.8007 -6.1835 -0.0260 31 1 1.7212 -7.8796 0.8553 32 1 1.7219 -7.8705 -0.9248 33 1 4.1109 -8.5339 -0.9278 34 1 4.1108 -8.5431 0.8521 35 1 2.3571 -10.2957 0.8436 36 1 2.3568 -10.2871 -0.9363 37 1 4.7062 -10.9013 -0.8303 38 1 5.6212 -13.2522 0.0031 39 1 4.8330 -13.1250 1.5959 40 1 4.9966 -15.5003 0.7777 41 1 3.3137 -14.9729 1.0272 42 1 3.2943 -14.4082 -2.7766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154809186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -118.274050 kcal Electronic energy + Delta-G solvation = -24151.955238 eV Core-core repulsion = 20257.751143 eV Total energy + Delta-G solvation = -3894.204095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -42.13556 -39.66357 -39.15497 -37.28181 -36.06360 -35.03895 -33.50467 -32.42024 -31.39835 -29.25206 -27.52984 -25.50042 -24.46698 -24.40237 -23.27119 -21.90820 -20.34580 -19.90880 -18.34326 -18.03205 -17.81111 -16.97220 -16.52079 -16.20142 -16.08887 -15.65093 -15.38494 -15.33619 -15.03862 -14.79676 -14.63860 -14.33286 -13.83888 -13.59167 -13.23654 -13.10519 -13.04623 -12.72190 -12.56777 -12.07830 -11.89463 -11.76805 -11.68675 -11.24912 -11.09442 -11.05393 -11.01573 -10.90374 -10.86235 -10.75327 -9.80790 -9.39372 -9.18466 -9.06263 -8.86566 -8.22510 -6.49047 -6.20904 -3.91376 0.83492 2.10350 2.12073 3.00150 3.12066 3.21510 3.22951 3.24829 3.30053 3.38837 3.76937 3.86804 3.91515 4.21252 4.23313 4.37229 4.49946 4.67582 4.77556 4.87665 4.93240 5.06492 5.14242 5.20232 5.24726 5.33219 5.35184 5.41822 5.51885 5.64933 5.85918 5.93223 5.96097 6.10280 6.15323 6.24265 6.57617 6.63761 6.71762 7.16746 7.60329 7.72792 8.35997 8.63397 9.24400 10.86542 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.048752 B = 0.001486 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.200592 B =18841.456847 C =18996.506293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.739 5.739 14 C 0.123 3.877 15 C -0.127 4.127 16 C 0.052 3.948 17 N -0.656 5.656 18 C 0.069 3.931 19 H 0.125 0.875 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.524 3.476 23 O -0.504 6.504 24 N -0.675 5.675 25 C 0.491 3.509 26 O -0.494 6.494 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.350 0.650 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 -30.621 2.228 33.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.165 4.165 16 C -0.077 4.077 17 N -0.287 5.287 18 C -0.046 4.046 19 H 0.142 0.858 20 C -0.150 4.150 21 C -0.183 4.183 22 C 0.313 3.687 23 O -0.376 6.376 24 N -0.341 5.341 25 C 0.278 3.722 26 O -0.365 6.365 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.169 0.831 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.362 -30.901 2.498 32.688 hybrid contribution 1.985 1.121 -1.490 2.723 sum 12.347 -29.781 1.008 32.254 Atomic orbital electron populations 1.70024 1.05956 1.27434 1.46876 1.24995 0.95026 0.99023 0.94538 0.86165 0.79405 0.81563 0.78339 1.20284 1.20751 1.19698 1.22876 0.94922 0.91675 1.58935 0.90917 1.85400 1.04996 0.96332 1.96713 1.23530 1.06538 0.95405 1.04926 1.20310 0.86528 0.86313 0.75150 1.90701 1.15410 1.85635 1.47516 1.45972 1.09943 1.05483 1.77968 1.21163 0.95834 0.80740 1.02452 1.21703 0.98238 0.93156 1.03413 1.22076 0.92392 0.90961 1.02280 1.60791 1.18590 0.99563 1.49714 1.21963 1.01144 0.91174 0.90278 0.85752 1.21747 0.98090 0.90617 1.04562 1.21975 1.05679 0.99179 0.91458 1.21110 0.74324 0.84116 0.89198 1.90814 1.48187 1.20814 1.77794 1.45044 1.62419 1.10228 1.16398 1.22479 0.75325 0.81381 0.93039 1.90828 1.41403 1.50254 1.54053 0.92194 0.89233 0.89198 0.76809 0.91535 0.91680 0.91254 0.90261 0.90199 0.92705 0.83108 0.90120 0.87573 0.86287 0.86736 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.95 7.85 -10.99 -0.09 9.86 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 13 N -0.74 -9.67 5.56 -60.29 -0.33 -10.01 16 14 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 15 C -0.13 -0.92 5.59 -26.74 -0.15 -1.07 16 16 C 0.05 0.34 5.35 -3.82 -0.02 0.32 16 17 N -0.66 -3.22 6.12 -107.87 -0.66 -3.88 16 18 C 0.07 0.24 2.72 -68.79 -0.19 0.05 16 19 H 0.12 0.30 7.80 -51.93 -0.41 -0.11 16 20 C -0.11 -0.15 5.70 -26.48 -0.15 -0.30 16 21 C -0.14 -0.20 6.07 -27.81 -0.17 -0.37 16 22 C 0.52 2.67 7.74 -11.32 -0.09 2.58 16 23 O -0.50 -4.54 17.88 5.60 0.10 -4.44 16 24 N -0.68 -3.47 5.10 -11.73 -0.06 -3.53 16 25 C 0.49 2.89 7.35 -11.29 -0.08 2.80 16 26 O -0.49 -4.76 15.75 5.61 0.09 -4.67 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.05 0.46 6.71 -51.93 -0.35 0.11 16 37 H 0.35 1.83 8.32 -39.29 -0.33 1.50 16 38 H 0.08 0.13 8.14 -51.92 -0.42 -0.29 16 39 H 0.11 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.11 -0.02 8.14 -51.93 -0.42 -0.45 16 42 H 0.41 2.14 8.79 -40.82 -0.36 1.78 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -38.29 371.80 -8.19 -46.48 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.98 Total: -0.08 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.54 Total: -0.68 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.32 Total: -42.92 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.28 Total: -20.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.29 -8.19 -46.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154809186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.794 kcal (2) G-P(sol) polarization free energy of solvation -38.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.84 seconds