Wall clock time and date at job start Tue Mar 31 2020 04:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47054 * 2 1 4 4 C 1.34229 * 116.99972 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99921 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00240 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46810 * 60.00020 * 6 4 3 8 8 N 1.46501 * 109.47037 * 179.97438 * 6 4 3 9 9 C 1.38536 * 120.00360 * 275.91406 * 8 6 4 10 10 C 1.40042 * 120.44654 * 354.87155 * 9 8 6 11 11 C 1.38809 * 118.58955 * 179.78094 * 10 9 8 12 12 Cl 1.73598 * 120.33369 * 180.24102 * 11 10 9 13 13 N 1.32203 * 119.32344 * 0.48753 * 11 10 9 14 14 C 1.33421 * 120.86260 * 359.75377 * 13 11 10 15 15 C 1.41579 * 119.23593 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99308 * 179.97438 * 15 14 13 17 17 C 1.40053 * 119.99787 * 359.97301 * 15 14 13 18 18 N 1.30688 * 120.00225 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99486 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47154 * 90.00086 * 19 17 15 21 21 H 1.48501 * 109.47269 * 209.99900 * 19 17 15 22 22 H 1.48497 * 109.47385 * 330.00474 * 19 17 15 23 23 N 1.32561 * 120.45033 * 175.14305 * 9 8 6 24 24 C 1.52994 * 109.47040 * 300.00153 * 6 4 3 25 25 H 1.08998 * 109.47483 * 60.75722 * 24 6 4 26 26 C 1.53004 * 109.47188 * 180.75938 * 24 6 4 27 27 O 1.42903 * 109.47097 * 300.75345 * 24 6 4 28 28 H 1.09005 * 109.47391 * 59.99866 * 1 2 3 29 29 H 1.09005 * 109.47625 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47210 * 299.99791 * 1 2 3 31 31 H 1.08998 * 109.46794 * 240.00153 * 2 1 3 32 32 H 1.08995 * 109.46799 * 120.00618 * 2 1 3 33 33 H 0.96998 * 119.99489 * 95.91146 * 8 6 4 34 34 H 1.08002 * 120.70716 * 0.02562 * 10 9 8 35 35 H 0.97002 * 119.99615 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.47378 * 175.60625 * 26 24 6 37 37 H 1.09002 * 109.47096 * 55.60521 * 26 24 6 38 38 H 1.09001 * 109.46300 * 295.60772 * 26 24 6 39 39 H 0.96704 * 114.00154 * 179.97438 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4690 0.8905 8 7 5.3838 2.8606 -0.0001 9 6 6.0692 2.7004 1.1931 10 6 5.3828 2.7179 2.4136 11 6 6.1072 2.5491 3.5856 12 17 5.3014 2.5570 5.1232 13 7 7.4176 2.3873 3.5191 14 6 8.0475 2.3796 2.3430 15 6 9.4519 2.2031 2.3118 16 1 9.9741 2.1945 1.3666 17 6 10.1638 2.0398 3.5069 18 7 9.5316 2.0498 4.6507 19 14 12.0166 1.8062 3.4656 20 1 12.6843 3.1307 3.5390 21 1 12.4367 0.9755 4.6226 22 1 12.4020 1.1271 2.2026 23 7 7.3843 2.5338 1.1953 24 6 3.4486 3.6851 -1.2485 25 1 2.3608 3.7539 -1.2412 26 6 4.0487 5.0925 -1.2576 27 8 3.8734 2.9787 -2.4159 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.8725 2.9220 -0.8357 34 1 4.3120 2.8559 2.4423 35 1 10.0247 1.9363 5.4783 36 1 3.7762 5.5977 -2.1841 37 1 5.1343 5.0251 -1.1862 38 1 3.6631 5.6572 -0.4087 39 1 3.6080 3.3964 -3.2467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168029128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:39 Heat of formation + Delta-G solvation = -90.029621 kcal Electronic energy + Delta-G solvation = -26192.417759 eV Core-core repulsion = 22161.561634 eV Total energy + Delta-G solvation = -4030.856125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51969 -39.04452 -37.97555 -36.46369 -35.63246 -35.10621 -33.51955 -32.07251 -31.55434 -30.76606 -29.23044 -27.42070 -26.38011 -23.48578 -22.38371 -22.04105 -21.76451 -20.33295 -18.32647 -17.77838 -17.12931 -16.83319 -16.45361 -16.25899 -15.94530 -15.06418 -14.71944 -14.32322 -14.18648 -13.86878 -13.63952 -13.53769 -13.36309 -12.90274 -12.82660 -12.76048 -12.53115 -12.13176 -11.83496 -11.66893 -11.45279 -11.38365 -11.27387 -11.19093 -10.81690 -10.50923 -10.45473 -10.38378 -10.25699 -10.20015 -9.87359 -9.14693 -9.03396 -8.29257 -7.49543 -7.27272 -6.57022 -4.79923 2.45825 2.49849 2.58811 2.96149 3.03632 3.06839 3.11547 3.18240 3.64972 3.88674 3.93798 4.51114 4.61490 4.69637 4.86025 4.90505 5.01408 5.07518 5.21336 5.25229 5.56654 5.61147 5.64943 5.67219 5.82797 5.86619 6.04691 6.07629 6.27077 6.36390 6.57447 6.77943 6.86395 7.09791 7.38944 7.60902 8.02167 8.10078 8.17026 8.50465 8.58569 9.03352 10.08605 10.23327 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003730 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.412888 B = 7504.583572 C = 8339.907903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.444 3.556 5 O -0.481 6.481 6 C 0.185 3.815 7 H 0.129 0.871 8 N -0.696 5.696 9 C 0.461 3.539 10 C -0.408 4.408 11 C 0.272 3.728 12 Cl -0.082 7.082 13 N -0.525 5.525 14 C 0.434 3.566 15 C -0.391 4.391 16 H 0.097 0.903 17 C 0.065 3.935 18 N -0.701 5.701 19 Si 0.921 3.079 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.259 1.259 23 N -0.633 5.633 24 C 0.103 3.897 25 H 0.080 0.920 26 C -0.185 4.185 27 O -0.561 6.561 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.277 0.723 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 3.330 -8.737 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.283 3.717 5 O -0.364 6.364 6 C 0.075 3.925 7 H 0.146 0.854 8 N -0.334 5.334 9 C 0.215 3.785 10 C -0.441 4.441 11 C 0.091 3.909 12 Cl -0.054 7.054 13 N -0.246 5.246 14 C 0.199 3.801 15 C -0.426 4.426 16 H 0.115 0.885 17 C -0.163 4.163 18 N -0.321 5.321 19 Si 0.744 3.256 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.183 1.183 23 N -0.362 5.362 24 C 0.043 3.957 25 H 0.098 0.902 26 C -0.242 4.242 27 O -0.368 6.368 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.304 2.438 -7.832 15.629 hybrid contribution -0.423 0.080 -0.345 0.552 sum -13.727 2.519 -8.177 16.175 Atomic orbital electron populations 1.21788 0.92851 1.02748 1.03300 1.22948 0.95014 0.80781 1.02554 1.86462 1.25024 1.32071 1.84678 1.24623 0.80399 0.93830 0.72888 1.90700 1.60212 1.42488 1.43034 1.20402 0.82894 0.89410 0.99843 0.85391 1.43631 1.01810 1.80675 1.07279 1.18021 0.89044 0.87098 0.84367 1.20845 0.99465 1.32328 0.91472 1.21384 0.91671 0.93441 0.84418 1.98293 1.77787 1.96701 1.32594 1.68595 1.05100 1.22342 1.28580 1.19474 0.93686 0.87290 0.79646 1.19382 0.88691 1.40130 0.94426 0.88510 1.26140 1.01466 0.93817 0.94922 1.70148 1.37181 1.26425 0.98386 0.86109 0.81004 0.79253 0.79244 1.19199 1.19964 1.18258 1.68195 1.05656 1.30302 1.32011 1.21977 0.98326 0.90994 0.84374 0.90179 1.22492 1.03579 0.95414 1.02750 1.86594 1.81189 1.53170 1.15812 0.91675 0.90487 0.91481 0.91510 0.91343 0.75300 0.87634 0.91134 0.91794 0.90613 0.90955 0.77040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.37 -5.12 10.14 -39.25 -0.40 -5.52 16 4 C 0.44 7.53 6.92 36.01 0.25 7.78 16 5 O -0.48 -10.26 16.07 -18.75 -0.30 -10.56 16 6 C 0.19 2.74 2.11 -69.08 -0.15 2.60 16 7 H 0.13 1.76 6.35 -51.93 -0.33 1.43 16 8 N -0.70 -12.98 3.98 -54.90 -0.22 -13.20 16 9 C 0.46 10.85 7.54 -154.99 -1.17 9.68 16 10 C -0.41 -9.49 9.15 -38.69 -0.35 -9.84 16 11 C 0.27 6.92 7.33 -17.18 -0.13 6.79 16 12 Cl -0.08 -1.77 29.15 -51.86 -1.51 -3.28 16 13 N -0.53 -14.92 7.86 -9.83 -0.08 -14.99 16 14 C 0.43 12.44 7.37 -158.35 -1.17 11.28 16 15 C -0.39 -10.74 9.37 -37.63 -0.35 -11.09 16 16 H 0.10 2.54 7.85 -52.49 -0.41 2.12 16 17 C 0.06 1.64 5.50 -17.36 -0.10 1.55 16 18 N -0.70 -18.61 11.42 55.55 0.63 -17.98 16 19 Si 0.92 18.57 29.56 -169.99 -5.02 13.55 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 N -0.63 -16.97 10.39 -11.89 -0.12 -17.09 16 24 C 0.10 1.07 3.27 -26.73 -0.09 0.99 16 25 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 26 C -0.18 -1.68 9.43 37.16 0.35 -1.33 16 27 O -0.56 -6.16 12.47 -35.23 -0.44 -6.60 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 32 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 33 H 0.41 7.52 8.06 -40.82 -0.33 7.20 16 34 H 0.11 2.14 6.27 -52.49 -0.33 1.81 16 35 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.86 7.25 -51.93 -0.38 0.49 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.38 2.26 9.08 45.56 0.41 2.67 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -34.58 355.07 -8.27 -42.85 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.88 Total: 8.95 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: -2.28 Total: 18.52 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.22 Total: -63.26 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.14 Total: -22.68 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.51 Total: -3.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.58 -8.27 -42.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168029128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.177 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds