Wall clock time and date at job start Tue Mar 31 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48497 * 109.47032 * 239.99895 * 3 2 1 5 5 H 1.48503 * 109.46846 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47390 * 119.99731 * 3 2 1 7 7 C 1.38953 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00510 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99771 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00557 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47032 * 179.97438 * 12 10 9 14 14 C 1.46907 * 110.99517 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46821 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47085 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.46933 * 180.02562 * 16 15 14 18 18 C 1.34778 * 119.99567 * 180.02562 * 17 16 15 19 19 O 1.21731 * 120.00314 * 359.97438 * 18 17 16 20 20 C 1.46341 * 119.99645 * 179.97438 * 18 17 16 21 21 C 1.36734 * 125.43670 * 179.97438 * 20 18 17 22 22 C 1.37345 * 113.33399 * 179.97438 * 21 20 18 23 23 C 1.34204 * 115.04329 * 0.02562 * 22 21 20 24 24 F 1.35098 * 124.53922 * 179.97438 * 23 22 21 25 25 S 1.70612 * 110.92031 * 359.97438 * 23 22 21 26 26 H 0.96998 * 119.99914 * 0.02562 * 1 2 3 27 27 H 0.97010 * 120.00138 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.46849 * 59.99993 * 12 10 9 29 29 H 1.08998 * 109.46954 * 300.00389 * 12 10 9 30 30 H 1.00894 * 111.00254 * 303.95535 * 13 12 10 31 31 H 1.09001 * 109.46980 * 60.00782 * 14 13 12 32 32 H 1.08998 * 109.47132 * 300.00408 * 14 13 12 33 33 H 1.09001 * 109.46689 * 60.00623 * 15 14 13 34 34 H 1.09002 * 109.47435 * 300.00606 * 15 14 13 35 35 H 1.09001 * 109.46933 * 60.00668 * 16 15 14 36 36 H 1.08998 * 109.46915 * 300.00456 * 16 15 14 37 37 H 0.97001 * 120.00085 * 359.97438 * 17 16 15 38 38 H 1.08004 * 123.33124 * 0.25071 * 21 20 18 39 39 H 1.07997 * 122.47544 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1984 -5.9795 0.0004 14 6 1.4980 -7.2708 0.0015 15 6 2.5230 -8.4068 0.0001 16 6 1.7936 -9.7518 0.0006 17 7 2.7750 -10.8395 -0.0001 18 6 2.3598 -12.1217 -0.0003 19 8 1.1694 -12.3760 0.0006 20 6 3.3401 -13.2082 -0.0017 21 6 3.0441 -14.5431 -0.0015 22 6 4.1575 -15.3473 -0.0036 23 6 5.3299 -14.6942 -0.0048 24 9 6.5406 -15.2937 -0.0063 25 16 5.0866 -13.0055 -0.0041 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3907 0.0005 28 1 0.6168 -4.9209 -0.8886 29 1 0.6174 -4.9205 0.8913 30 1 2.8327 -5.9124 -0.7814 31 1 0.8723 -7.3456 -0.8878 32 1 0.8741 -7.3450 0.8922 33 1 3.1491 -8.3323 0.8892 34 1 3.1466 -8.3324 -0.8908 35 1 1.1678 -9.8260 -0.8887 36 1 1.1697 -9.8263 0.8913 37 1 3.7236 -10.6368 -0.0013 38 1 2.0346 -14.9271 -0.0043 39 1 4.0942 -16.4254 -0.0033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177355412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:17 Heat of formation + Delta-G solvation = -84.593373 kcal Electronic energy + Delta-G solvation = -23254.652404 eV Core-core repulsion = 19238.448508 eV Total energy + Delta-G solvation = -4016.203896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.68025 -40.21430 -38.35402 -38.03388 -36.57180 -34.97713 -33.86302 -31.80964 -31.18991 -29.89737 -27.26031 -25.66656 -24.65939 -23.33974 -21.87923 -21.82136 -20.32978 -19.49731 -19.16199 -17.89268 -17.30964 -17.02468 -16.60976 -16.40744 -16.12472 -15.71066 -15.47548 -15.07861 -14.78880 -14.67744 -14.41117 -14.25732 -13.73178 -13.52923 -13.43348 -13.12733 -12.77045 -12.66863 -12.10545 -11.89860 -11.87281 -11.64513 -11.48481 -11.46020 -11.10182 -10.96953 -10.54592 -10.44811 -10.22091 -9.61040 -9.50947 -9.38812 -9.27084 -8.48981 -8.09673 -7.97081 -6.42409 -3.83402 -0.28013 0.35627 0.97662 1.62650 2.62985 2.69676 3.19659 3.25483 3.29804 3.68315 3.89679 4.05752 4.24565 4.27120 4.63013 4.68855 4.75190 4.88433 4.98674 5.14432 5.18019 5.24630 5.34640 5.38852 5.43826 5.56121 5.57763 5.76478 5.86033 5.95407 5.96694 6.03492 6.25418 6.95846 7.16303 7.54233 7.61642 7.67182 8.05148 8.60324 9.16857 9.53303 10.04703 10.75195 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.001467 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.744451 B =19077.207059 C =19871.869746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.063 3.937 15 C -0.131 4.131 16 C 0.121 3.879 17 N -0.724 5.724 18 C 0.592 3.408 19 O -0.524 6.524 20 C -0.263 4.263 21 C -0.034 4.034 22 C -0.182 4.182 23 C -0.020 4.020 24 F -0.097 7.097 25 S 0.229 5.771 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.349 0.651 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.166 0.834 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -29.628 -0.895 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.169 4.169 16 C -0.002 4.002 17 N -0.375 5.375 18 C 0.377 3.623 19 O -0.401 6.401 20 C -0.383 4.383 21 C -0.066 4.066 22 C -0.215 4.215 23 C -0.158 4.158 24 F -0.076 7.076 25 S 0.493 5.507 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.168 0.832 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.183 0.817 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.330 -28.371 -0.215 29.069 hybrid contribution -0.682 -0.583 -0.894 1.267 sum 5.648 -28.954 -1.110 29.520 Atomic orbital electron populations 1.69601 1.05942 1.28290 1.50432 1.25264 0.95636 0.99731 0.97259 0.85908 0.78753 0.80425 0.79066 1.19931 1.20971 1.19876 1.19660 0.93364 0.82259 1.47799 0.87960 1.41856 1.09215 1.04597 1.64272 1.19808 0.88386 0.84733 0.84548 1.90519 1.13767 1.87082 1.55514 1.21669 0.94322 0.90894 1.01308 1.60040 1.18987 0.99892 1.51305 1.21820 0.95257 0.88740 1.00926 1.21767 0.99091 0.92233 1.03835 1.21418 0.91070 0.84674 1.03078 1.45893 1.10655 1.05490 1.75456 1.16744 0.87213 0.81608 0.76689 1.90876 1.15861 1.83569 1.49841 1.24544 0.96026 0.98447 1.19330 1.20516 1.00634 0.90140 0.95307 1.20331 0.90119 1.03241 1.07813 1.21976 0.84357 0.97451 1.11970 1.91558 1.39709 1.82237 1.94126 1.83495 0.99696 0.99249 1.68244 0.91802 0.77432 0.93797 0.89518 0.83165 0.95154 0.90671 0.89969 0.91121 0.90911 0.90678 0.76660 0.81703 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 10 C 0.44 10.30 7.82 -10.99 -0.09 10.21 16 11 O -0.58 -15.75 15.78 5.54 0.09 -15.66 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.27 6.13 -115.05 -0.70 -10.98 16 14 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 15 C -0.13 -1.14 5.59 -26.73 -0.15 -1.29 16 16 C 0.12 1.02 5.67 -4.04 -0.02 0.99 16 17 N -0.72 -5.75 5.55 -61.72 -0.34 -6.09 16 18 C 0.59 5.77 7.77 -13.00 -0.10 5.67 16 19 O -0.52 -6.89 16.84 5.16 0.09 -6.80 16 20 C -0.26 -2.01 6.44 -36.87 -0.24 -2.25 16 21 C -0.03 -0.23 10.00 -40.45 -0.40 -0.63 16 22 C -0.18 -1.07 10.16 -41.33 -0.42 -1.49 16 23 C -0.02 -0.13 8.10 29.31 0.24 0.11 16 24 F -0.10 -0.73 17.32 2.25 0.04 -0.69 16 25 S 0.23 1.32 22.14 -107.50 -2.38 -1.06 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 2.35 7.58 -40.82 -0.31 2.04 16 38 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -33.25 362.19 -8.29 -41.55 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.70 Total: 11.48 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.48 Total: 4.82 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.38 Total: -55.02 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.04 Total: -0.69 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.38 Total: -1.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.25 -8.29 -41.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177355412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.047 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds