Wall clock time and date at job start Tue Mar 31 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47175 * 270.00004 * 3 2 1 5 5 H 1.48497 * 109.47053 * 29.99612 * 3 2 1 6 6 H 1.48494 * 109.47319 * 149.99896 * 3 2 1 7 7 C 1.37879 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99983 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99528 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40268 * 66.46414 * 9 7 2 11 11 O 1.42099 * 106.40496 * 293.53891 * 9 7 2 12 12 N 1.65613 * 107.21633 * 179.97438 * 9 7 2 13 13 C 1.47612 * 118.74580 * 90.00006 * 12 9 7 14 14 C 1.53793 * 111.30163 * 138.34217 * 13 12 9 15 15 C 1.51279 * 109.62705 * 319.95799 * 14 13 12 16 16 N 1.46198 * 109.10053 * 92.41439 * 15 14 13 17 17 C 1.39132 * 110.99990 * 144.76312 * 16 15 14 18 18 C 1.39106 * 119.68434 * 310.76038 * 17 16 15 19 19 C 1.38310 * 119.12284 * 179.79317 * 18 17 16 20 20 C 1.39045 * 118.48741 * 0.47427 * 19 18 17 21 21 F 1.35092 * 120.35889 * 179.72542 * 20 19 18 22 22 C 1.38217 * 119.27780 * 359.74694 * 20 19 18 23 23 N 1.31992 * 120.82161 * 0.02562 * 22 20 19 24 24 C 1.41442 * 116.34164 * 272.96959 * 16 15 14 25 25 C 1.44922 * 118.84686 * 270.02961 * 12 9 7 26 26 H 0.97006 * 119.99967 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.11471 * 17.86962 * 13 12 9 28 28 H 1.09005 * 109.06214 * 258.78074 * 13 12 9 29 29 H 1.09004 * 109.44647 * 199.91395 * 14 13 12 30 30 H 1.08998 * 109.42173 * 79.98819 * 14 13 12 31 31 H 1.08995 * 109.53469 * 332.51930 * 15 14 13 32 32 H 1.09005 * 109.52843 * 212.29584 * 15 14 13 33 33 H 1.08000 * 120.43691 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.75272 * 180.22022 * 19 18 17 35 35 H 1.08002 * 119.58896 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.38475 * 183.63791 * 24 16 15 37 37 H 1.09006 * 109.38657 * 303.42944 * 24 16 15 38 38 H 1.09001 * 109.53287 * 149.72740 * 25 12 9 39 39 H 1.08993 * 109.36120 * 29.84152 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7199 0.0019 10 8 0.4510 -2.7961 -1.2476 11 8 0.4519 -2.7944 1.2519 12 7 2.2484 -3.9354 0.0016 13 6 2.7316 -4.4559 1.2956 14 6 2.8525 -5.9888 1.2712 15 6 1.6774 -6.5795 0.5237 16 7 2.0395 -6.7447 -0.8831 17 6 1.4535 -7.8877 -1.4178 18 6 1.5590 -9.0976 -0.7396 19 6 0.9684 -10.2257 -1.2795 20 6 0.2969 -10.1072 -2.4913 21 9 -0.2890 -11.1858 -3.0556 22 6 0.2357 -8.8740 -3.1125 23 7 0.8057 -7.8144 -2.5697 24 6 1.8261 -5.6258 -1.7216 25 6 2.7228 -4.4487 -1.2680 26 1 -0.4850 0.8401 -0.0004 27 1 2.0330 -4.1654 2.0804 28 1 3.7091 -4.0240 1.5104 29 1 2.8605 -6.3686 2.2930 30 1 3.7793 -6.2714 0.7718 31 1 0.8210 -5.9100 0.6035 32 1 1.4240 -7.5497 0.9512 33 1 2.0918 -9.1546 0.1981 34 1 1.0309 -11.1778 -0.7735 35 1 -0.2849 -8.7762 -4.0537 36 1 2.0714 -5.8922 -2.7497 37 1 0.7796 -5.3259 -1.6655 38 1 3.7502 -4.7964 -1.1595 39 1 2.6858 -3.6558 -2.0149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:05 Heat of formation + Delta-G solvation = -70.780428 kcal Electronic energy + Delta-G solvation = -26662.921419 eV Core-core repulsion = 22647.316497 eV Total energy + Delta-G solvation = -4015.604922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -49.01399 -40.91095 -38.42339 -35.39758 -35.03082 -33.97858 -33.12010 -33.02350 -32.10428 -30.11753 -26.97595 -26.18668 -26.10933 -23.86993 -22.95222 -21.08970 -20.50218 -18.78456 -18.12355 -17.56865 -17.33912 -16.77759 -16.23160 -16.05241 -15.72756 -15.22154 -15.07979 -14.86806 -14.37226 -14.03593 -13.89215 -13.71597 -13.58947 -13.35200 -13.10601 -12.65010 -12.28767 -12.18666 -11.99990 -11.61434 -11.43542 -11.24797 -11.21329 -10.89492 -10.84498 -10.61488 -10.30952 -10.12514 -10.10066 -10.02172 -9.75341 -9.65430 -9.26563 -8.93358 -8.24750 -7.95876 -6.71471 -5.34073 0.82575 0.95586 2.23705 3.05368 3.12201 3.18419 3.27725 3.63448 3.98209 4.03582 4.31702 4.44991 4.55684 4.62193 4.72716 4.80090 5.02230 5.16864 5.28000 5.32946 5.42755 5.58695 5.61493 5.66358 5.71076 5.73124 5.81688 5.95594 6.03007 6.10145 6.19000 6.22711 6.34782 6.40712 6.54835 6.72133 6.95131 7.19649 7.30600 7.60599 7.82558 7.95339 8.87286 10.22025 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.003273 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.395039 B = 8552.777533 C = 8990.500408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.708 3.292 10 O -1.000 7.000 11 O -1.006 7.006 12 N -1.011 6.011 13 C 0.115 3.885 14 C -0.127 4.127 15 C 0.069 3.931 16 N -0.483 5.483 17 C 0.319 3.681 18 C -0.171 4.171 19 C -0.083 4.083 20 C 0.001 3.999 21 F -0.137 7.137 22 C 0.111 3.889 23 N -0.495 5.495 24 C 0.050 3.950 25 C 0.133 3.867 26 H 0.291 0.709 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -16.874 -0.469 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.809 3.191 10 O -0.990 6.990 11 O -0.996 6.996 12 N -0.846 5.846 13 C -0.010 4.010 14 C -0.166 4.166 15 C -0.056 4.056 16 N -0.198 5.198 17 C 0.087 3.913 18 C -0.194 4.194 19 C -0.109 4.109 20 C -0.022 4.022 21 F -0.116 7.116 22 C -0.049 4.049 23 N -0.209 5.209 24 C -0.079 4.079 25 C 0.006 3.994 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.185 -16.112 -0.839 16.947 hybrid contribution 0.325 0.317 0.218 0.503 sum 5.510 -15.796 -0.620 16.741 Atomic orbital electron populations 1.69895 1.06789 1.30745 1.40108 1.24757 0.94461 1.00829 0.88487 0.86176 0.80182 0.80068 0.79229 1.19133 1.19955 1.18649 1.30613 1.06125 1.11878 1.66844 0.87983 1.00727 0.72324 0.73159 0.72854 1.93371 1.72682 1.87533 1.45454 1.93337 1.72903 1.87612 1.45789 1.57789 1.63051 1.54523 1.09234 1.21594 1.00536 0.93242 0.85658 1.21830 0.98810 0.95772 1.00201 1.21894 0.98631 1.01425 0.83669 1.55719 1.55618 1.04021 1.04397 1.20026 0.89232 0.91597 0.90485 1.21481 1.03993 0.91151 1.02764 1.21450 0.95616 1.00030 0.93822 1.18587 1.02565 0.85340 0.95755 1.91486 1.82358 1.53242 1.84543 1.22686 0.96352 0.86241 0.99598 1.67749 1.09815 1.30747 1.12591 1.21943 1.00824 0.88747 0.96411 1.21164 0.97514 0.95390 0.85337 0.89879 0.88873 0.92196 0.90135 0.90237 0.92004 0.90148 0.83552 0.83667 0.81665 0.88533 0.92439 0.90632 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -1.02 -27.85 9.75 30.60 0.30 -27.55 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.71 70.45 4.86 -107.50 -0.52 69.93 16 10 O -1.00 -28.55 16.37 -57.17 -0.94 -29.49 16 11 O -1.01 -28.59 16.41 -57.17 -0.94 -29.53 16 12 N -1.01 -19.58 2.48 -113.20 -0.28 -19.86 16 13 C 0.12 1.83 6.29 -3.02 -0.02 1.81 16 14 C -0.13 -1.51 5.78 -27.19 -0.16 -1.67 16 15 C 0.07 0.92 5.09 -5.07 -0.03 0.89 16 16 N -0.48 -6.84 3.89 -177.78 -0.69 -7.53 16 17 C 0.32 4.30 6.48 -154.94 -1.00 3.30 16 18 C -0.17 -1.78 8.79 -39.23 -0.34 -2.12 16 19 C -0.08 -0.79 10.15 -39.26 -0.40 -1.19 16 20 C 0.00 0.01 7.34 -39.29 -0.29 -0.28 16 21 F -0.14 -1.51 17.28 2.25 0.04 -1.47 16 22 C 0.11 1.31 11.16 -17.49 -0.20 1.12 16 23 N -0.50 -7.09 8.53 -12.37 -0.11 -7.20 16 24 C 0.05 0.83 4.67 -5.74 -0.03 0.80 16 25 C 0.13 2.26 5.36 -3.95 -0.02 2.24 16 26 H 0.29 7.66 8.31 -40.82 -0.34 7.33 16 27 H 0.09 1.62 6.69 -51.93 -0.35 1.27 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.88 7.98 -51.93 -0.41 0.47 16 31 H 0.06 1.02 7.32 -51.93 -0.38 0.64 16 32 H 0.08 0.84 5.86 -51.93 -0.30 0.54 16 33 H 0.15 1.18 7.04 -52.49 -0.37 0.81 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.10 1.52 7.33 -51.93 -0.38 1.14 16 37 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 38 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 39 H 0.09 1.61 7.65 -51.93 -0.40 1.21 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -34.80 334.25 -9.61 -44.42 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.64 Total: 3.41 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.28 Total: -19.07 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.35 Total: -58.66 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -1.87 Total: -59.02 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 70.45 SS G_CDS: -0.52 Total: 69.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.80 -9.61 -44.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.364 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds