Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39780 * 126.08988 * 2 1 4 4 N 1.30838 * 108.32111 * 179.97438 * 3 2 1 5 5 N 1.40067 * 108.38979 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.03984 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47105 * 90.02730 * 6 5 4 8 8 C 1.53178 * 109.54148 * 65.17411 * 7 6 5 9 9 C 1.53285 * 109.05855 * 176.85591 * 8 7 6 10 10 O 1.42909 * 109.46236 * 302.44151 * 9 8 7 11 11 C 1.42904 * 114.09510 * 61.16043 * 10 9 8 12 12 C 1.53094 * 109.41571 * 298.84755 * 11 10 9 13 13 C 1.35245 * 107.91719 * 0.26314 * 5 4 3 14 14 N 1.39199 * 126.22600 * 179.73864 * 13 5 4 15 15 S 1.65604 * 120.00479 * 239.27390 * 14 13 5 16 16 O 1.42096 * 106.40341 * 175.85264 * 15 14 13 17 17 O 1.42100 * 106.39945 * 308.77041 * 15 14 13 18 18 C 1.76201 * 107.21695 * 62.30995 * 15 14 13 19 19 H 1.08004 * 120.00140 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99783 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00056 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99734 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47084 * 60.00276 * 22 20 18 24 24 H 1.48507 * 109.47133 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47490 * 300.00144 * 22 20 18 26 26 H 1.08994 * 109.47371 * 85.39723 * 1 2 3 27 27 H 1.09006 * 109.46749 * 205.39845 * 1 2 3 28 28 H 1.08996 * 109.47195 * 325.39565 * 1 2 3 29 29 H 1.07998 * 125.83545 * 359.97438 * 3 2 1 30 30 H 1.08995 * 109.47735 * 330.02687 * 6 5 4 31 31 H 1.08997 * 109.47358 * 210.02297 * 6 5 4 32 32 H 1.09005 * 109.53958 * 304.99798 * 7 6 5 33 33 H 1.08999 * 109.52323 * 296.83855 * 8 7 6 34 34 H 1.09000 * 109.52023 * 57.03519 * 8 7 6 35 35 H 1.09010 * 109.45550 * 182.45317 * 9 8 7 36 36 H 1.08996 * 109.46894 * 62.44862 * 9 8 7 37 37 H 1.08997 * 109.48096 * 178.85885 * 11 10 9 38 38 H 1.09005 * 109.48685 * 58.83066 * 11 10 9 39 39 H 1.09003 * 109.51545 * 297.69723 * 12 11 10 40 40 H 1.09003 * 109.57322 * 177.54682 * 12 11 10 41 41 H 0.97001 * 119.99975 * 59.26509 * 14 13 5 42 42 H 0.97003 * 119.99997 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3304 1.1296 0.0000 4 7 3.5763 0.7303 0.0006 5 7 3.5915 -0.6703 0.0003 6 6 4.7854 -1.5193 0.0003 7 6 5.2005 -1.8157 1.4428 8 6 4.1145 -2.6516 2.1271 9 6 4.5763 -3.0084 3.5445 10 8 5.8191 -3.7108 3.4777 11 6 6.8828 -2.9597 2.8889 12 6 6.5152 -2.6017 1.4465 13 6 2.3093 -1.1003 -0.0063 14 7 1.8864 -2.4265 -0.0138 15 16 0.9412 -2.9872 -1.2526 16 8 0.7642 -4.3785 -1.0242 17 8 -0.1421 -2.0758 -1.3750 18 6 1.8834 -2.8421 -2.7345 19 1 2.8862 -2.4426 -2.6998 20 6 1.3405 -3.2386 -3.9382 21 7 0.1192 -3.7247 -3.9804 22 14 2.3391 -3.0841 -5.5093 23 1 3.5778 -3.8945 -5.3901 24 1 1.5352 -3.5755 -6.6572 25 1 2.6984 -1.6602 -5.7294 26 1 -0.3634 0.0825 -1.0243 27 1 -0.3633 -0.9284 0.4408 28 1 -0.3633 0.8458 0.5836 29 1 1.9953 2.1562 -0.0004 30 1 5.5975 -1.0045 -0.5130 31 1 4.5659 -2.4549 -0.5141 32 1 5.3344 -0.8787 1.9835 33 1 3.1898 -2.0768 2.1769 34 1 3.9461 -3.5659 1.5581 35 1 3.8272 -3.6400 4.0222 36 1 4.7056 -2.0951 4.1251 37 1 7.7951 -3.5560 2.8943 38 1 7.0425 -2.0456 3.4608 39 1 6.3952 -3.5151 0.8638 40 1 7.3056 -1.9918 1.0088 41 1 2.1454 -3.0223 0.7065 42 1 -0.2627 -4.0040 -4.8273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -67.303864 kcal Electronic energy + Delta-G solvation = -27827.450400 eV Core-core repulsion = 23935.456539 eV Total energy + Delta-G solvation = -3891.993862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.74 seconds Orbital eigenvalues (eV) -41.06414 -39.43765 -35.58418 -35.38558 -34.48619 -34.11757 -33.15716 -32.16612 -31.24905 -29.78036 -27.46033 -26.24372 -25.23323 -23.81354 -23.19844 -20.84312 -20.21818 -19.88811 -19.12009 -17.53421 -17.32228 -16.56792 -16.25299 -16.18451 -15.30601 -14.97619 -14.90396 -14.86141 -14.27253 -14.07818 -13.82343 -13.62958 -13.26892 -12.92600 -12.69437 -12.55771 -12.16538 -12.00786 -11.79105 -11.54997 -11.53236 -11.43083 -11.26620 -11.19226 -10.95007 -10.75854 -10.69151 -10.56849 -10.44511 -10.39592 -10.06970 -9.78013 -9.63594 -9.31533 -8.97705 -8.64825 -7.64156 -6.79890 -5.42752 1.86004 2.30410 2.79907 3.02833 3.07698 3.13411 3.20673 3.69875 3.97336 4.39737 4.42123 4.55265 4.56983 4.59988 4.78907 4.90678 5.00967 5.14384 5.28163 5.39503 5.41978 5.48632 5.49954 5.52483 5.62848 5.69378 5.77066 5.84795 5.88939 5.89804 6.08081 6.18300 6.32239 6.41601 6.65813 6.77793 6.93677 7.00275 7.11299 7.22921 7.33084 7.77231 7.83158 8.08211 8.78897 10.14478 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.004923 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.211423 B = 5686.505250 C = 6185.934890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.227 4.227 3 C 0.054 3.946 4 N -0.296 5.296 5 N -0.375 5.375 6 C 0.135 3.865 7 C -0.103 4.103 8 C -0.163 4.163 9 C 0.064 3.936 10 O -0.382 6.382 11 C 0.063 3.937 12 C -0.150 4.150 13 C 0.325 3.675 14 N -1.055 6.055 15 S 2.702 3.298 16 O -0.996 6.996 17 O -0.976 6.976 18 C -1.014 5.014 19 H 0.097 0.903 20 C 0.137 3.863 21 N -0.842 5.842 22 Si 0.919 3.081 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.264 1.264 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.181 0.819 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.409 0.591 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.035 4.904 10.623 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.242 4.242 3 C -0.131 4.131 4 N -0.118 5.118 5 N -0.162 5.162 6 C 0.013 3.987 7 C -0.123 4.123 8 C -0.201 4.201 9 C -0.012 4.012 10 O -0.301 6.301 11 C -0.014 4.014 12 C -0.189 4.189 13 C 0.104 3.896 14 N -0.805 5.805 15 S 2.802 3.198 16 O -0.986 6.986 17 O -0.966 6.966 18 C -1.148 5.148 19 H 0.116 0.884 20 C -0.082 4.082 21 N -0.472 5.472 22 Si 0.743 3.257 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.188 1.188 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.198 0.802 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.245 0.755 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.255 4.634 10.581 15.447 hybrid contribution 0.415 -0.082 -1.125 1.202 sum 10.670 4.552 9.456 14.967 Atomic orbital electron populations 1.20161 0.87950 1.00637 1.03131 1.20006 0.97662 0.90536 1.15966 1.23492 0.89851 0.99431 1.00352 1.77252 1.20988 0.87590 1.26011 1.48712 1.04483 1.04660 1.58307 1.21713 0.85865 0.94217 0.96925 1.21613 0.95299 0.99359 0.96034 1.22477 0.99170 1.00963 0.97522 1.22586 0.86087 0.96973 0.95583 1.87945 1.19022 1.41801 1.81338 1.22539 0.90381 0.96242 0.92203 1.22204 0.96930 1.01244 0.98489 1.17144 0.84395 0.85341 1.02677 1.53920 1.70664 1.13889 1.42009 1.01175 0.73392 0.72340 0.72878 1.93405 1.85756 1.33278 1.86182 1.93429 1.52405 1.64760 1.85975 1.30324 1.15176 1.57356 1.11917 0.88438 1.24683 0.94183 0.89126 1.00212 1.69865 1.13557 1.33600 1.30138 0.86207 0.80179 0.79711 0.79579 1.18887 1.19910 1.18804 0.89932 0.91834 0.93834 0.80160 0.88642 0.88559 0.90042 0.90326 0.90237 0.88553 0.93237 0.88750 0.93274 0.90295 0.90378 0.75504 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.12 8.31 36.01 0.30 -0.82 16 2 C -0.23 -4.21 5.99 -104.79 -0.63 -4.84 16 3 C 0.05 0.88 11.95 -17.40 -0.21 0.67 16 4 N -0.30 -5.03 12.56 30.61 0.38 -4.65 16 5 N -0.37 -6.33 3.45 -60.46 -0.21 -6.53 16 6 C 0.13 1.86 5.81 -4.04 -0.02 1.83 16 7 C -0.10 -1.17 2.48 -90.44 -0.22 -1.40 16 8 C -0.16 -1.94 3.98 -26.49 -0.11 -2.05 16 9 C 0.06 0.68 6.85 37.30 0.26 0.94 16 10 O -0.38 -4.46 10.77 -35.23 -0.38 -4.84 16 11 C 0.06 0.58 6.84 37.21 0.25 0.83 16 12 C -0.15 -1.40 5.42 -26.59 -0.14 -1.55 16 13 C 0.33 6.13 5.65 -153.42 -0.87 5.26 16 14 N -1.05 -20.56 5.57 31.10 0.17 -20.39 16 15 S 2.70 68.24 4.99 -107.50 -0.54 67.71 16 16 O -1.00 -27.86 18.02 -57.17 -1.03 -28.89 16 17 O -0.98 -26.05 13.06 -57.17 -0.75 -26.79 16 18 C -1.01 -27.16 9.62 30.60 0.29 -26.86 16 19 H 0.10 2.45 7.81 -52.48 -0.41 2.04 16 20 C 0.14 3.72 5.46 -17.82 -0.10 3.62 16 21 N -0.84 -23.98 13.19 55.43 0.73 -23.25 16 22 Si 0.92 20.37 29.54 -169.99 -5.02 15.34 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 26 H 0.08 1.70 7.14 -51.93 -0.37 1.33 16 27 H 0.06 1.23 6.97 -51.93 -0.36 0.87 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.18 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.38 8.09 -51.93 -0.42 0.96 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.02 6.13 -51.93 -0.32 0.70 16 34 H 0.08 0.99 7.47 -51.93 -0.39 0.61 16 35 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.41 6.83 6.29 -34.47 -0.22 6.61 16 42 H 0.29 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -33.94 350.38 -8.39 -42.33 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.85 Total: 9.04 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -1.19 Total: -24.36 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 1.08 Total: -54.82 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -2.16 Total: -60.52 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 68.24 SS G_CDS: -0.54 Total: 67.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.94 -8.39 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.974 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.75 seconds