Wall clock time and date at job start Tue Mar 31 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99860 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99941 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99430 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00037 * 3 2 1 7 7 C 1.38805 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99647 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99519 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46620 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00612 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99805 * 180.02562 * 11 10 9 14 14 C 1.47049 * 120.12455 * 359.72272 * 13 11 10 15 15 C 1.53987 * 107.13398 * 130.14782 * 14 13 11 16 16 O 1.42654 * 108.29793 * 55.81102 * 15 14 13 17 17 C 1.42780 * 115.67836 * 295.42995 * 16 15 14 18 18 H 1.09000 * 112.20387 * 290.84103 * 17 16 15 19 19 C 1.55394 * 107.10690 * 166.20057 * 17 16 15 20 20 N 1.47896 * 104.74665 * 281.72088 * 19 17 16 21 21 C 1.46908 * 110.99686 * 213.42236 * 20 19 17 22 22 C 1.50697 * 109.46911 * 69.87436 * 21 20 19 23 23 N 1.34779 * 119.99448 * 179.97438 * 22 21 20 24 24 O 1.21278 * 120.00229 * 0.02562 * 22 21 20 25 25 C 1.47630 * 108.49092 * 335.63562 * 20 19 17 26 26 C 1.45670 * 120.12422 * 180.02562 * 13 11 10 27 27 H 1.08991 * 109.95668 * 345.53225 * 26 13 11 28 28 H 0.96995 * 120.00442 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47229 * 300.00038 * 10 9 7 30 30 H 1.09002 * 109.47430 * 60.00130 * 10 9 7 31 31 H 1.09002 * 109.87861 * 249.68046 * 14 13 11 32 32 H 1.09001 * 109.88213 * 10.74715 * 14 13 11 33 33 H 1.09001 * 109.83410 * 296.05862 * 15 14 13 34 34 H 1.08992 * 109.64907 * 175.46361 * 15 14 13 35 35 H 1.08999 * 110.38271 * 40.54226 * 19 17 16 36 36 H 1.09000 * 110.37714 * 162.90163 * 19 17 16 37 37 H 1.09000 * 109.46716 * 189.87623 * 21 20 19 38 38 H 1.08995 * 109.47024 * 309.86960 * 21 20 19 39 39 H 0.96999 * 120.00525 * 0.02562 * 23 22 21 40 40 H 0.96998 * 119.99768 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.97067 * 241.83437 * 25 20 19 42 42 H 1.09005 * 109.96773 * 120.57646 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3441 -2.2961 0.0014 13 7 6.0459 -4.4945 0.0030 14 6 5.1137 -5.6317 0.0095 15 6 5.5547 -6.5863 -1.1154 16 8 6.9207 -6.9350 -0.8970 17 6 7.8560 -5.8602 -0.9901 18 1 7.9614 -5.4931 -2.0109 19 6 9.1945 -6.3654 -0.3834 20 7 8.9972 -6.2887 1.0803 21 6 10.2539 -5.9552 1.7641 22 6 10.6273 -4.5271 1.4604 23 7 11.7509 -3.9984 1.9845 24 8 9.9165 -3.8534 0.7451 25 6 7.9581 -5.2780 1.3603 26 6 7.4822 -4.7373 0.0037 27 1 8.0144 -3.8212 -0.2521 28 1 -0.4850 0.8400 -0.0004 29 1 3.6434 -3.4309 0.8926 30 1 3.6441 -3.4321 -0.8873 31 1 5.1583 -6.1421 0.9716 32 1 4.0990 -5.2803 -0.1777 33 1 5.4521 -6.0920 -2.0814 34 1 4.9388 -7.4853 -1.0957 35 1 9.3846 -7.3947 -0.6875 36 1 10.0176 -5.7199 -0.6899 37 1 10.1254 -6.0762 2.8397 38 1 11.0445 -6.6196 1.4157 39 1 12.3193 -4.5372 2.5568 40 1 11.9915 -3.0794 1.7887 41 1 8.3778 -4.4682 1.9572 42 1 7.1245 -5.7383 1.8907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217337604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:10 Heat of formation + Delta-G solvation = -82.318670 kcal Electronic energy + Delta-G solvation = -26975.493931 eV Core-core repulsion = 23082.848978 eV Total energy + Delta-G solvation = -3892.644953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 19.11 seconds Orbital eigenvalues (eV) -41.24070 -39.83012 -38.33408 -36.60908 -34.75513 -34.07131 -32.43032 -31.97048 -29.84383 -28.64355 -28.15351 -26.12954 -25.56963 -23.61560 -22.09426 -21.23399 -20.64750 -18.87586 -17.83332 -17.73181 -17.44367 -16.95673 -16.70561 -16.18781 -15.79179 -15.60937 -15.19241 -14.96724 -14.77855 -14.47309 -14.18106 -13.86296 -13.73600 -13.35974 -13.06445 -12.83666 -12.70472 -12.45178 -12.05630 -11.87027 -11.75318 -11.60304 -11.49953 -11.24260 -10.99943 -10.68391 -10.58737 -10.44561 -10.11509 -9.98857 -9.84568 -9.40725 -8.99369 -8.68382 -8.47338 -8.34974 -6.90792 -6.28134 -3.99633 2.25909 2.68116 2.95244 3.12921 3.20186 3.34092 3.47523 3.51926 3.57772 3.70788 4.34007 4.39355 4.48931 4.54216 4.61168 4.73010 4.85480 4.96967 4.97963 5.05775 5.11022 5.14561 5.20358 5.32378 5.35277 5.48466 5.58428 5.65628 5.69936 5.76094 5.90436 5.98746 6.04267 6.43957 6.49472 6.57106 6.67378 6.94920 7.10929 7.47714 7.91426 7.94999 8.42219 8.47756 9.18249 10.81118 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.003293 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.162182 B = 8501.609795 C = 9684.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.121 4.121 11 C 0.531 3.469 12 O -0.511 6.511 13 N -0.612 5.612 14 C 0.071 3.929 15 C 0.050 3.950 16 O -0.368 6.368 17 C 0.075 3.925 18 H 0.084 0.916 19 C 0.052 3.948 20 N -0.495 5.495 21 C 0.024 3.976 22 C 0.477 3.523 23 N -0.856 5.856 24 O -0.527 6.527 25 C 0.046 3.954 26 C 0.106 3.894 27 H 0.128 0.872 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.400 0.600 41 H 0.069 0.931 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.734 -17.494 2.809 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.271 4.271 11 C 0.319 3.681 12 O -0.384 6.384 13 N -0.348 5.348 14 C -0.053 4.053 15 C -0.027 4.027 16 O -0.287 6.287 17 C 0.016 3.984 18 H 0.101 0.899 19 C -0.076 4.076 20 N -0.217 5.217 21 C -0.108 4.108 22 C 0.260 3.740 23 N -0.421 5.421 24 O -0.403 6.403 25 C -0.082 4.082 26 C 0.001 3.999 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.228 0.772 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.989 -16.398 2.560 28.354 hybrid contribution -0.245 0.859 -0.037 0.894 sum 22.744 -15.538 2.523 27.660 Atomic orbital electron populations 1.69933 1.05901 1.27762 1.48143 1.24703 0.94436 0.98939 0.93179 0.86743 0.81914 0.83307 0.79948 1.19203 1.19927 1.15940 1.22312 0.88238 0.97529 1.58714 0.89376 1.84827 1.09270 1.00093 1.97399 1.23312 0.93990 1.04256 1.05558 1.20378 0.90667 0.81847 0.75230 1.90709 1.58654 1.41577 1.47496 1.47708 1.05738 1.05888 1.75432 1.22621 0.94401 0.87969 1.00290 1.23027 0.83269 0.99373 0.97059 1.87790 1.15618 1.32991 1.92266 1.23543 0.89326 0.87544 0.97983 0.89854 1.23157 0.95326 1.02017 0.87066 1.64055 1.04921 1.44387 1.08374 1.22581 0.94443 0.91405 1.02388 1.22059 0.80773 0.91360 0.79774 1.44039 1.26456 1.17886 1.53690 1.90831 1.49986 1.62590 1.36893 1.22928 0.94607 0.93079 0.97618 1.22360 0.81690 1.00802 0.95069 0.85469 0.91943 0.88453 0.88551 0.90320 0.88169 0.92560 0.87533 0.88836 0.91630 0.87326 0.87519 0.77188 0.76921 0.91311 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 22.14 27.74 -169.99 -4.72 17.42 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.24 -6.11 6.74 56.52 0.38 -5.73 16 7 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 16 10 C -0.12 -2.45 4.50 36.01 0.16 -2.28 16 11 C 0.53 10.41 7.69 -10.98 -0.08 10.32 16 12 O -0.51 -12.00 15.27 5.56 0.08 -11.92 16 13 N -0.61 -9.46 2.72 -164.40 -0.45 -9.91 16 14 C 0.07 0.84 6.29 -3.23 -0.02 0.82 16 15 C 0.05 0.53 7.04 37.67 0.27 0.79 16 16 O -0.37 -4.44 10.09 -35.23 -0.36 -4.79 16 17 C 0.08 0.92 4.12 -24.65 -0.10 0.82 16 18 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 19 C 0.05 0.53 5.75 -2.00 -0.01 0.52 16 20 N -0.49 -5.08 5.42 -232.62 -1.26 -6.34 16 21 C 0.02 0.17 5.85 -4.97 -0.03 0.14 16 22 C 0.48 4.29 6.75 -10.99 -0.07 4.22 16 23 N -0.86 -4.53 8.87 31.22 0.28 -4.26 16 24 O -0.53 -7.35 11.60 5.56 0.06 -7.28 16 25 C 0.05 0.60 5.60 -3.11 -0.02 0.58 16 26 C 0.11 1.56 2.58 -67.26 -0.17 1.39 16 27 H 0.13 2.31 5.42 -51.93 -0.28 2.03 16 28 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.10 1.84 7.99 -51.92 -0.41 1.42 16 30 H 0.10 1.80 7.61 -51.92 -0.40 1.40 16 31 H 0.08 0.87 7.54 -51.93 -0.39 0.48 16 32 H 0.10 1.14 5.95 -51.93 -0.31 0.83 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.46 8.08 -51.93 -0.42 0.04 16 39 H 0.40 0.71 8.83 -40.82 -0.36 0.35 16 40 H 0.40 2.20 8.93 -40.82 -0.36 1.83 16 41 H 0.07 0.99 5.82 -51.93 -0.30 0.69 16 42 H 0.08 1.02 7.22 -51.93 -0.38 0.65 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -37.72 343.89 -7.90 -45.62 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.65 Total: 2.81 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 0.13 Total: 5.20 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.66 Total: -46.53 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.21 Total: -24.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.42 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.72 -7.90 -45.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217337604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.695 kcal (2) G-P(sol) polarization free energy of solvation -37.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.11 seconds