Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47559 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.46761 * 60.00021 * 3 2 1 7 7 C 1.39937 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99942 * 163.31489 * 7 2 1 9 9 C 1.41436 * 119.99822 * 343.31981 * 7 2 1 10 10 C 1.40786 * 120.17581 * 155.37977 * 9 7 2 11 11 C 1.37717 * 120.04120 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41137 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.35773 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.02536 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00108 * 205.90972 * 14 13 12 16 16 N 1.34776 * 120.00086 * 25.90497 * 14 13 12 17 17 C 1.46561 * 125.30557 * 176.60727 * 16 14 13 18 18 C 1.53723 * 108.17329 * 181.22618 * 17 16 14 19 19 H 1.08999 * 113.19651 * 251.75045 * 18 17 16 20 20 C 1.51766 * 108.85064 * 124.84193 * 18 17 16 21 21 C 1.47595 * 125.80628 * 86.09413 * 20 18 17 22 22 N 1.34773 * 120.00532 * 180.02562 * 21 20 18 23 23 O 1.21556 * 119.99971 * 359.97438 * 21 20 18 24 24 N 1.31029 * 107.28516 * 265.89795 * 20 18 17 25 25 O 1.41398 * 113.17515 * 0.10929 * 24 20 18 26 26 C 1.43962 * 107.57747 * 341.93028 * 25 24 20 27 27 H 1.09006 * 113.34704 * 264.06220 * 26 25 24 28 28 C 1.46683 * 125.30710 * 356.30421 * 16 14 13 29 29 C 1.39033 * 119.95016 * 359.78836 * 13 12 11 30 30 H 0.97001 * 119.99434 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.98391 * 359.94983 * 10 9 7 32 32 H 1.07999 * 119.79212 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.82249 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.73493 * 300.91391 * 17 16 14 35 35 H 1.08998 * 109.73740 * 61.53617 * 17 16 14 36 36 H 0.97005 * 119.99648 * 359.97438 * 22 21 20 37 37 H 0.96997 * 120.00623 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.97230 * 281.37688 * 28 16 14 39 39 H 1.09005 * 109.97365 * 42.64858 * 28 16 14 40 40 H 1.07996 * 120.20640 * 180.26196 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0538 -1.2315 -0.2691 9 6 1.3453 -2.4111 0.3505 10 6 1.8257 -3.6485 -0.1186 11 6 1.1787 -4.8146 0.2253 12 6 0.0553 -4.7803 1.0324 13 6 -0.4360 -3.5604 1.5089 14 6 -1.6370 -3.5324 2.3714 15 8 -2.3370 -2.5394 2.4065 16 7 -1.9552 -4.6080 3.1186 17 6 -3.0731 -4.6822 4.0635 18 6 -3.0540 -6.0718 4.7206 19 1 -3.8637 -6.7181 4.3819 20 6 -3.0138 -5.9008 6.2281 21 6 -4.1851 -5.7238 7.1086 22 7 -4.0137 -5.5812 8.4377 23 8 -5.3044 -5.7056 6.6348 24 7 -1.7557 -5.9444 6.5915 25 8 -0.8689 -6.1274 5.5055 26 6 -1.6371 -6.6307 4.3969 27 1 -1.6057 -7.7166 4.3071 28 6 -1.2406 -5.8890 3.1082 29 6 0.2084 -2.3746 1.1749 30 1 -0.4849 0.8401 -0.0004 31 1 2.7020 -3.6834 -0.7490 32 1 1.5504 -5.7615 -0.1371 33 1 -0.4450 -5.7005 1.2959 34 1 -2.9614 -3.9125 4.8270 35 1 -4.0142 -4.5393 3.5323 36 1 -3.1205 -5.5954 8.8158 37 1 -4.7834 -5.4653 9.0164 38 1 -1.5337 -6.4717 2.2350 39 1 -0.1646 -5.7150 3.0960 40 1 -0.1648 -1.4307 1.5440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275475887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = -4.029722 kcal Electronic energy + Delta-G solvation = -27518.911608 eV Core-core repulsion = 23494.217568 eV Total energy + Delta-G solvation = -4024.694040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51623 -39.72361 -38.95421 -37.06407 -35.92854 -34.43866 -33.81216 -33.31835 -31.14771 -30.02515 -29.45176 -28.59075 -25.42492 -25.21657 -24.26566 -22.07448 -21.46049 -20.89042 -20.37418 -19.22899 -18.37290 -17.79367 -17.33765 -16.61441 -16.23881 -15.78890 -15.59934 -15.31399 -15.09598 -14.89993 -14.74999 -14.44467 -14.05541 -13.44585 -13.32274 -12.95087 -12.81305 -12.69638 -12.35384 -12.29314 -12.16366 -11.77789 -11.64305 -11.26919 -11.15530 -10.98307 -10.90545 -10.69558 -10.41403 -10.30043 -10.10035 -9.99848 -9.67808 -9.26049 -9.09595 -8.46730 -7.66175 -7.52785 -6.80070 -4.43395 0.42534 2.19938 2.25860 2.52072 2.77601 2.80380 3.07169 3.11601 3.13453 3.20847 3.65800 3.77842 3.87583 3.90908 4.01350 4.18331 4.55688 4.59489 4.86788 4.93037 5.06008 5.35142 5.50198 5.56820 5.59084 5.68013 5.73652 6.07713 6.13733 6.26243 6.45316 6.48568 6.70044 6.78512 6.96387 7.00380 7.18943 7.35055 7.57160 7.60589 7.72959 7.83073 7.95896 8.14293 8.47974 8.73944 8.79670 8.82076 10.13929 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.003042 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.544623 B = 9201.384102 C = 9925.984573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.100 3.900 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.234 4.234 13 C -0.121 4.121 14 C 0.583 3.417 15 O -0.533 6.533 16 N -0.618 5.618 17 C 0.122 3.878 18 C -0.105 4.105 19 H 0.135 0.865 20 C 0.045 3.955 21 C 0.601 3.399 22 N -0.833 5.833 23 O -0.512 6.512 24 N -0.236 5.236 25 O -0.162 6.162 26 C 0.030 3.970 27 H 0.128 0.872 28 C 0.106 3.894 29 C -0.095 4.095 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -13.120 12.689 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.098 3.902 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.253 4.253 13 C -0.125 4.125 14 C 0.376 3.624 15 O -0.410 6.410 16 N -0.354 5.354 17 C -0.002 4.002 18 C -0.127 4.127 19 H 0.153 0.847 20 C -0.150 4.150 21 C 0.382 3.618 22 N -0.398 5.398 23 O -0.384 6.384 24 N 0.023 4.977 25 O -0.186 6.186 26 C -0.029 4.029 27 H 0.145 0.855 28 C -0.018 4.018 29 C -0.115 4.115 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.241 0.759 37 H 0.246 0.754 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.518 -12.223 13.004 18.680 hybrid contribution -0.069 0.599 -0.319 0.683 sum -5.587 -11.624 12.685 18.089 Atomic orbital electron populations 1.69807 1.07503 1.29678 1.33621 1.25987 0.94799 1.01583 0.92388 0.86230 0.80851 0.80824 0.78688 1.18330 1.19886 1.19606 1.19622 0.97806 0.90861 1.40480 0.90023 1.17581 0.91170 0.92522 0.88962 1.21124 1.03266 0.92836 1.05816 1.20449 0.95965 0.96706 0.98391 1.20871 1.00973 0.95399 1.08098 1.19318 0.95688 0.95596 1.01849 1.18711 0.85237 0.80136 0.78267 1.90742 1.52350 1.31877 1.65996 1.48031 1.30483 1.13753 1.43176 1.21508 0.92094 0.93763 0.92854 1.23328 1.00172 0.99482 0.89707 0.84714 1.26285 0.93276 0.99279 0.96131 1.16752 0.86130 0.76808 0.82071 1.43660 1.13911 1.75042 1.07197 1.90925 1.23374 1.49185 1.74951 1.78946 1.00648 1.06358 1.11783 1.91306 1.25835 1.83067 1.18384 1.24946 0.88600 1.00008 0.89305 0.85486 1.22459 1.00519 0.84830 0.94034 1.21568 0.96703 0.95874 0.97357 0.90456 0.88606 0.88829 0.87705 0.91334 0.89852 0.75903 0.75439 0.88999 0.87219 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.84 10.92 55.55 0.61 -20.23 16 2 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -11.99 9.06 -37.73 -0.34 -12.34 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 10 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 11 C -0.10 -2.00 10.01 -39.72 -0.40 -2.40 16 12 C -0.23 -4.76 8.03 -38.92 -0.31 -5.07 16 13 C -0.12 -2.85 5.71 -105.04 -0.60 -3.45 16 14 C 0.58 13.01 7.64 -12.31 -0.09 12.91 16 15 O -0.53 -13.74 16.93 5.32 0.09 -13.65 16 16 N -0.62 -10.55 3.31 -173.60 -0.57 -11.13 16 17 C 0.12 1.78 6.42 -3.63 -0.02 1.76 16 18 C -0.11 -1.13 3.95 -89.42 -0.35 -1.48 16 19 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 20 C 0.04 0.48 6.30 -78.59 -0.50 -0.02 16 21 C 0.60 5.94 8.09 -12.44 -0.10 5.84 16 22 N -0.83 -5.00 8.87 30.47 0.27 -4.73 16 23 O -0.51 -6.58 17.79 5.32 0.09 -6.49 16 24 N -0.24 -2.76 12.30 35.58 0.44 -2.32 16 25 O -0.16 -2.15 12.14 -11.37 -0.14 -2.28 16 26 C 0.03 0.32 4.92 -24.82 -0.12 0.20 16 27 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 28 C 0.11 1.37 4.68 -3.48 -0.02 1.36 16 29 C -0.09 -2.52 8.23 -38.44 -0.32 -2.84 16 30 H 0.28 6.96 8.30 -40.82 -0.34 6.63 16 31 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.73 4.23 -52.49 -0.22 1.51 16 34 H 0.07 1.10 7.60 -51.93 -0.39 0.70 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.41 1.90 8.57 -40.82 -0.35 1.55 16 37 H 0.41 1.65 8.93 -40.82 -0.36 1.28 16 38 H 0.09 1.00 6.87 -51.93 -0.36 0.65 16 39 H 0.11 1.58 6.49 -51.93 -0.34 1.25 16 40 H 0.13 3.77 5.95 -52.49 -0.31 3.46 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -33.39 342.07 -7.32 -40.71 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.00 Total: 8.32 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -4.24 Total: -7.08 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.74 Total: -38.42 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.05 Total: -22.43 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.39 -7.32 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275475887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.685 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds