Wall clock time and date at job start Tue Mar 31 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47559 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.46761 * 60.00021 * 3 2 1 7 7 C 1.39937 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99942 * 163.31489 * 7 2 1 9 9 C 1.41436 * 119.99822 * 343.31981 * 7 2 1 10 10 C 1.40786 * 120.17581 * 155.37977 * 9 7 2 11 11 C 1.37717 * 120.04120 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41137 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.35773 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.02536 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00108 * 205.90972 * 14 13 12 16 16 N 1.34776 * 120.00086 * 25.90497 * 14 13 12 17 17 C 1.46561 * 125.30557 * 176.60727 * 16 14 13 18 18 C 1.53723 * 108.17329 * 181.22618 * 17 16 14 19 19 H 1.08999 * 113.19651 * 251.75045 * 18 17 16 20 20 C 1.51766 * 108.85064 * 124.84193 * 18 17 16 21 21 C 1.47595 * 125.80628 * 86.09413 * 20 18 17 22 22 N 1.34773 * 120.00532 * 180.02562 * 21 20 18 23 23 O 1.21556 * 119.99971 * 359.97438 * 21 20 18 24 24 N 1.31029 * 107.28516 * 265.89795 * 20 18 17 25 25 O 1.41398 * 113.17515 * 0.10929 * 24 20 18 26 26 C 1.43962 * 107.57747 * 341.93028 * 25 24 20 27 27 H 1.09006 * 113.34704 * 264.06220 * 26 25 24 28 28 C 1.46683 * 125.30710 * 356.30421 * 16 14 13 29 29 C 1.39033 * 119.95016 * 359.78836 * 13 12 11 30 30 H 0.97001 * 119.99434 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.98391 * 359.94983 * 10 9 7 32 32 H 1.07999 * 119.79212 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.82249 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.73493 * 300.91391 * 17 16 14 35 35 H 1.08998 * 109.73740 * 61.53617 * 17 16 14 36 36 H 0.97005 * 119.99648 * 359.97438 * 22 21 20 37 37 H 0.96997 * 120.00623 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.97230 * 281.37688 * 28 16 14 39 39 H 1.09005 * 109.97365 * 42.64858 * 28 16 14 40 40 H 1.07996 * 120.20640 * 180.26196 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0538 -1.2315 -0.2691 9 6 1.3453 -2.4111 0.3505 10 6 1.8257 -3.6485 -0.1186 11 6 1.1787 -4.8146 0.2253 12 6 0.0553 -4.7803 1.0324 13 6 -0.4360 -3.5604 1.5089 14 6 -1.6370 -3.5324 2.3714 15 8 -2.3370 -2.5394 2.4065 16 7 -1.9552 -4.6080 3.1186 17 6 -3.0731 -4.6822 4.0635 18 6 -3.0540 -6.0718 4.7206 19 1 -3.8637 -6.7181 4.3819 20 6 -3.0138 -5.9008 6.2281 21 6 -4.1851 -5.7238 7.1086 22 7 -4.0137 -5.5812 8.4377 23 8 -5.3044 -5.7056 6.6348 24 7 -1.7557 -5.9444 6.5915 25 8 -0.8689 -6.1274 5.5055 26 6 -1.6371 -6.6307 4.3969 27 1 -1.6057 -7.7166 4.3071 28 6 -1.2406 -5.8890 3.1082 29 6 0.2084 -2.3746 1.1749 30 1 -0.4849 0.8401 -0.0004 31 1 2.7020 -3.6834 -0.7490 32 1 1.5504 -5.7615 -0.1371 33 1 -0.4450 -5.7005 1.2959 34 1 -2.9614 -3.9125 4.8270 35 1 -4.0142 -4.5393 3.5323 36 1 -3.1205 -5.5954 8.8158 37 1 -4.7834 -5.4653 9.0164 38 1 -1.5337 -6.4717 2.2350 39 1 -0.1646 -5.7150 3.0960 40 1 -0.1648 -1.4307 1.5440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275475887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:33 Heat of formation + Delta-G solvation = -30.416456 kcal Electronic energy + Delta-G solvation = -27520.055823 eV Core-core repulsion = 23494.217568 eV Total energy + Delta-G solvation = -4025.838255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.52732 -40.86552 -40.19966 -38.82345 -37.30112 -35.61331 -35.21084 -34.23304 -32.60006 -31.52063 -31.19537 -29.78099 -27.21178 -26.35439 -25.40467 -23.39536 -22.93312 -22.42734 -21.16674 -20.78518 -19.48862 -19.11185 -18.22642 -17.78734 -17.50456 -17.35862 -16.89301 -16.56770 -16.35876 -16.29844 -16.04824 -15.64369 -15.09276 -14.98134 -14.78600 -14.50468 -14.34296 -14.17810 -13.68740 -13.56926 -13.37005 -13.20191 -12.98232 -12.82519 -12.60859 -12.49579 -12.19549 -11.99063 -11.92323 -11.75210 -11.44792 -11.10885 -11.00805 -10.90157 -10.80396 -9.91326 -9.47940 -9.36252 -8.66162 -6.39347 -0.41721 0.38687 0.99338 1.34914 1.40661 1.45267 1.51356 1.65335 1.79884 1.93673 2.12933 2.17721 2.73089 2.86771 3.01016 3.16056 3.34936 3.61749 3.67001 3.82524 3.99542 4.10575 4.21740 4.42452 4.47708 4.52856 4.54887 4.65519 4.69287 4.88593 5.06993 5.14961 5.22333 5.32063 5.50909 5.53415 5.73360 5.82405 5.93584 6.03791 6.10873 6.23382 6.30907 6.59826 6.87128 6.93957 6.94750 7.07566 8.29913 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.003042 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.544623 B = 9201.384102 C = 9925.984573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.068 3.932 10 C -0.214 4.214 11 C -0.094 4.094 12 C -0.207 4.207 13 C -0.133 4.133 14 C 0.576 3.424 15 O -0.586 6.586 16 N -0.610 5.610 17 C 0.116 3.884 18 C -0.096 4.096 19 H 0.168 0.832 20 C 0.051 3.949 21 C 0.601 3.399 22 N -0.810 5.810 23 O -0.546 6.546 24 N -0.241 5.241 25 O -0.191 6.191 26 C 0.043 3.957 27 H 0.179 0.821 28 C 0.091 3.909 29 C -0.135 4.135 30 H 0.285 0.715 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.420 0.580 37 H 0.425 0.575 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -16.764 13.366 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.804 3.196 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.234 4.234 11 C -0.111 4.111 12 C -0.226 4.226 13 C -0.137 4.137 14 C 0.369 3.631 15 O -0.467 6.467 16 N -0.344 5.344 17 C -0.008 4.008 18 C -0.118 4.118 19 H 0.185 0.815 20 C -0.144 4.144 21 C 0.382 3.618 22 N -0.376 5.376 23 O -0.421 6.421 24 N 0.017 4.983 25 O -0.214 6.214 26 C -0.015 4.015 27 H 0.196 0.804 28 C -0.031 4.031 29 C -0.155 4.155 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.252 0.748 37 H 0.260 0.740 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.130 -15.942 13.733 21.657 hybrid contribution -0.233 1.502 -0.416 1.576 sum -5.363 -14.440 13.317 20.362 Atomic orbital electron populations 1.69924 1.09249 1.30411 1.35737 1.26886 0.95404 1.05060 0.91433 0.85144 0.79707 0.76097 0.78695 1.17259 1.18930 1.19687 1.19889 0.98145 0.92011 1.42512 0.89724 1.17926 0.91742 0.94082 0.89715 1.21456 1.03676 0.92850 1.05443 1.20979 0.95217 0.97736 0.97202 1.21455 1.00074 0.95793 1.05310 1.19610 0.95949 0.95974 1.02128 1.18605 0.84750 0.80840 0.78947 1.90703 1.53844 1.34213 1.67925 1.47929 1.31003 1.13806 1.41636 1.21638 0.91093 0.96029 0.91996 1.23394 1.01816 0.97245 0.89308 0.81484 1.26439 0.93199 0.98322 0.96390 1.16736 0.85343 0.76828 0.82932 1.43548 1.15090 1.72860 1.06083 1.90920 1.24279 1.51211 1.75641 1.78971 1.00747 1.07096 1.11500 1.91289 1.27062 1.83700 1.19375 1.25209 0.87300 1.02005 0.87015 0.80413 1.22835 0.99633 0.83324 0.97338 1.21351 0.98604 0.95791 0.99772 0.90456 0.87259 0.83849 0.82874 0.93587 0.89935 0.74800 0.74014 0.85402 0.88283 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.36 10.92 21.82 0.24 -47.12 16 2 C 0.03 1.41 5.16 85.25 0.44 1.85 16 3 Si 0.98 40.30 29.59 68.60 2.03 42.33 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.50 -27.24 9.06 23.47 0.21 -27.03 16 8 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 9 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 10 C -0.21 -9.88 9.78 22.77 0.22 -9.66 16 11 C -0.09 -3.56 10.01 22.18 0.22 -3.34 16 12 C -0.21 -7.88 8.03 22.70 0.18 -7.69 16 13 C -0.13 -6.38 5.71 -20.13 -0.11 -6.49 16 14 C 0.58 26.40 7.64 86.80 0.66 27.06 16 15 O -0.59 -32.16 16.93 -3.87 -0.07 -32.22 16 16 N -0.61 -20.23 3.31 -821.42 -2.72 -22.94 16 17 C 0.12 3.30 6.42 86.61 0.56 3.86 16 18 C -0.10 -1.77 3.95 -10.02 -0.04 -1.81 16 19 H 0.17 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.05 0.98 6.30 45.49 0.29 1.26 16 21 C 0.60 10.75 8.09 86.71 0.70 11.45 16 22 N -0.81 -8.05 8.87 -175.80 -1.56 -9.61 16 23 O -0.55 -13.21 17.79 -3.89 -0.07 -13.28 16 24 N -0.24 -5.10 12.30 -41.36 -0.51 -5.61 16 25 O -0.19 -4.56 12.14 -38.33 -0.47 -5.03 16 26 C 0.04 0.71 4.92 31.83 0.16 0.87 16 27 H 0.18 1.29 8.14 -2.38 -0.02 1.27 16 28 C 0.09 2.02 4.68 86.64 0.41 2.43 16 29 C -0.13 -7.58 8.23 23.01 0.19 -7.39 16 30 H 0.28 15.07 8.30 -92.71 -0.77 14.30 16 31 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.15 4.26 4.23 -2.91 -0.01 4.24 16 34 H 0.05 1.51 7.60 -2.39 -0.02 1.49 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.42 2.94 8.57 -92.70 -0.79 2.14 16 37 H 0.43 2.49 8.93 -92.71 -0.83 1.66 16 38 H 0.13 2.01 6.87 -2.39 -0.02 1.99 16 39 H 0.10 2.50 6.49 -2.38 -0.02 2.49 16 40 H 0.09 5.84 5.95 -2.91 -0.02 5.82 16 Total: -1.00 -80.99 342.07 0.37 -80.63 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.48 Total: 23.92 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.96 Total: -11.06 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -4.55 Total: -85.29 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.60 Total: -50.53 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -80.99 0.37 -80.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275475887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.210 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds