Wall clock time and date at job start Tue Mar 31 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48497 * 109.47067 * 89.99818 * 3 2 1 5 5 H 1.48501 * 109.47564 * 210.00089 * 3 2 1 6 6 H 1.48509 * 109.47159 * 330.00127 * 3 2 1 7 7 C 1.40230 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00377 * 173.37299 * 7 2 1 9 9 C 1.41109 * 119.99519 * 353.37875 * 7 2 1 10 10 C 1.40882 * 120.10675 * 333.30154 * 9 7 2 11 11 C 1.36319 * 119.89552 * 179.76936 * 10 9 7 12 12 C 1.40012 * 120.10468 * 0.51098 * 11 10 9 13 13 C 1.47637 * 119.89471 * 179.76176 * 12 11 10 14 14 O 1.21584 * 120.00100 * 318.33490 * 13 12 11 15 15 N 1.34783 * 119.99913 * 138.33894 * 13 12 11 16 16 C 1.46678 * 125.31855 * 174.08069 * 15 13 12 17 17 C 1.54189 * 106.79258 * 161.64925 * 16 15 13 18 18 H 1.09006 * 113.64080 * 263.91938 * 17 16 15 19 19 C 1.51725 * 108.63154 * 135.64019 * 17 16 15 20 20 C 1.47598 * 125.79345 * 87.00983 * 19 17 16 21 21 N 1.34773 * 120.00266 * 179.97438 * 20 19 17 22 22 O 1.21555 * 120.00100 * 359.97438 * 20 19 17 23 23 N 1.28964 * 108.41579 * 266.98352 * 19 17 16 24 24 O 1.41390 * 112.89727 * 0.24718 * 23 19 17 25 25 C 1.43985 * 107.63422 * 342.05115 * 24 23 19 26 26 H 1.08998 * 113.75637 * 263.82818 * 25 24 23 27 27 C 1.46603 * 125.31547 * 354.38708 * 15 13 12 28 28 C 1.40018 * 120.20945 * 359.74466 * 12 11 10 29 29 C 1.36319 * 120.10243 * 359.97438 * 28 12 11 30 30 H 0.96997 * 120.00558 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.05379 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.95076 * 180.25766 * 11 10 9 33 33 H 1.09002 * 109.97795 * 281.12909 * 16 15 13 34 34 H 1.08999 * 109.97516 * 42.41290 * 16 15 13 35 35 H 0.97004 * 119.99682 * 0.02562 * 21 20 19 36 36 H 0.96995 * 120.00714 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.74375 * 300.90515 * 27 15 13 38 38 H 1.08994 * 109.74532 * 61.57212 * 27 15 13 39 39 H 1.07997 * 119.94547 * 179.97438 * 28 12 11 40 40 H 1.08008 * 120.05111 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 1.4001 5 1 3.5380 1.4403 -0.7000 6 1 1.4378 2.6527 -0.7000 7 6 2.0077 -1.2144 0.0005 8 1 3.0822 -1.2176 -0.1074 9 6 1.3092 -2.4323 0.1420 10 6 0.0742 -2.4641 0.8193 11 6 -0.5992 -3.6422 0.9493 12 6 -0.0603 -4.8212 0.4204 13 6 -0.7910 -6.0955 0.5685 14 8 -1.3335 -6.3662 1.6224 15 7 -0.8567 -6.9587 -0.4645 16 6 -1.4415 -8.3028 -0.4106 17 6 -1.7204 -8.7260 -1.8668 18 1 -2.7458 -8.5410 -2.1870 19 6 -1.2607 -10.1601 -2.0513 20 6 -2.0651 -11.3666 -1.7760 21 7 -1.5380 -12.5897 -1.9827 22 8 -3.2030 -11.2572 -1.3627 23 7 -0.0481 -10.1460 -2.4901 24 8 0.4629 -8.8378 -2.6526 25 6 -0.6565 -7.9327 -2.6815 26 1 -0.9865 -7.6745 -3.6877 27 6 -0.3491 -6.7033 -1.8159 28 6 1.1693 -4.7956 -0.2488 29 6 1.8472 -3.6212 -0.3888 30 1 -0.4851 0.8400 -0.0004 31 1 -0.3403 -1.5558 1.2312 32 1 -1.5480 -3.6669 1.4648 33 1 -0.7398 -8.9959 0.0535 34 1 -2.3731 -8.2811 0.1549 35 1 -0.6298 -12.6770 -2.3121 36 1 -2.0664 -13.3826 -1.8014 37 1 -0.8418 -5.8258 -2.2346 38 1 0.7277 -6.5386 -1.7798 39 1 1.5813 -5.7077 -0.6548 40 1 2.7955 -3.6024 -0.9056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275736981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:47 Heat of formation + Delta-G solvation = -13.642235 kcal Electronic energy + Delta-G solvation = -27172.348791 eV Core-core repulsion = 23147.237921 eV Total energy + Delta-G solvation = -4025.110870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61016 -39.71663 -38.95460 -37.20402 -35.90776 -34.49550 -33.90890 -33.40522 -31.06062 -30.02581 -29.59179 -28.57462 -26.15090 -25.06099 -23.85228 -21.86957 -21.45389 -20.95191 -20.39806 -19.17540 -18.42170 -17.58781 -17.53559 -16.88704 -16.47960 -15.88718 -15.49377 -15.39645 -15.23438 -14.93758 -14.64817 -14.20385 -14.05048 -13.56259 -13.37657 -12.93991 -12.72695 -12.56481 -12.40788 -12.29966 -12.08210 -11.87630 -11.64245 -11.44351 -11.23045 -11.14230 -10.98373 -10.89694 -10.61718 -10.32015 -10.10085 -10.04599 -9.54701 -9.44001 -9.15272 -8.43408 -7.72573 -7.52180 -6.91118 -4.62667 0.47069 2.22536 2.25725 2.51589 2.78014 2.91830 2.96026 2.98971 3.01213 3.24750 3.61235 3.76902 3.79273 3.87851 4.00402 4.23233 4.50790 4.63728 4.86256 4.91289 5.05833 5.44585 5.52047 5.57328 5.65068 5.69578 5.78482 6.11053 6.15458 6.23153 6.45799 6.51058 6.77463 6.80790 6.84142 7.03163 7.14004 7.43509 7.55264 7.57170 7.74379 7.86876 7.96696 8.09124 8.45068 8.65691 8.74401 8.79942 9.95843 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.002517 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.656532 B =11121.167275 C =11613.668681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.442 4.442 8 H 0.082 0.918 9 C 0.122 3.878 10 C -0.174 4.174 11 C -0.045 4.045 12 C -0.272 4.272 13 C 0.596 3.404 14 O -0.555 6.555 15 N -0.621 5.621 16 C 0.121 3.879 17 C -0.105 4.105 18 H 0.136 0.864 19 C 0.053 3.947 20 C 0.598 3.402 21 N -0.833 5.833 22 O -0.511 6.511 23 N -0.238 5.238 24 O -0.168 6.168 25 C 0.034 3.966 26 H 0.127 0.873 27 C 0.105 3.895 28 C -0.057 4.057 29 C -0.229 4.229 30 H 0.285 0.715 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.411 0.589 36 H 0.413 0.587 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 -15.791 -8.253 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.200 1.200 7 C -0.471 4.471 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.194 4.194 11 C -0.065 4.065 12 C -0.277 4.277 13 C 0.392 3.608 14 O -0.434 6.434 15 N -0.357 5.357 16 C -0.003 4.003 17 C -0.127 4.127 18 H 0.154 0.846 19 C -0.143 4.143 20 C 0.379 3.621 21 N -0.398 5.398 22 O -0.383 6.383 23 N 0.020 4.980 24 O -0.191 6.191 25 C -0.025 4.025 26 H 0.144 0.856 27 C -0.019 4.019 28 C -0.076 4.076 29 C -0.248 4.248 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.241 0.759 36 H 0.246 0.754 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.094 -15.990 -7.675 17.860 hybrid contribution -0.024 0.843 -0.115 0.851 sum -2.118 -15.147 -7.791 17.164 Atomic orbital electron populations 1.69686 1.07690 1.29627 1.33763 1.26088 0.94964 1.01818 0.92111 0.86138 0.80317 0.79816 0.79523 1.19073 1.18405 1.20017 1.19822 0.95483 0.90244 1.41515 0.89966 1.17814 0.91607 0.92065 0.86579 1.21295 0.97875 0.97003 1.03185 1.20425 0.97924 0.91795 0.96325 1.18787 0.99807 0.91715 1.17347 1.18518 0.78360 0.82882 0.81072 1.90686 1.48295 1.77084 1.27331 1.48143 1.61377 1.15291 1.10891 1.21677 1.00125 0.85312 0.93216 1.23452 1.03390 0.87590 0.98251 0.84603 1.25751 0.94320 0.96822 0.97394 1.16837 0.85367 0.82025 0.77892 1.43655 1.19977 1.07309 1.68902 1.90929 1.17151 1.86105 1.44096 1.78270 1.09903 1.03117 1.06681 1.91292 1.26580 1.09636 1.91571 1.24723 0.85521 0.91777 1.00483 0.85551 1.22019 1.02388 0.95382 0.82079 1.20438 0.94069 0.96607 0.96498 1.20730 1.02085 0.93301 1.08684 0.90400 0.84872 0.88717 0.91858 0.89118 0.75908 0.75443 0.88861 0.88614 0.88707 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.88 10.48 55.56 0.58 -18.29 16 2 C 0.07 1.62 5.34 -17.31 -0.09 1.53 16 3 Si 0.92 17.42 29.57 -169.99 -5.03 12.40 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.44 -10.90 9.08 -37.75 -0.34 -11.24 16 8 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 9 C 0.12 3.07 5.60 -106.81 -0.60 2.47 16 10 C -0.17 -4.38 8.63 -39.27 -0.34 -4.72 16 11 C -0.05 -1.08 9.58 -39.61 -0.38 -1.46 16 12 C -0.27 -6.09 5.46 -104.73 -0.57 -6.66 16 13 C 0.60 12.64 7.41 -12.42 -0.09 12.55 16 14 O -0.56 -13.38 17.20 5.29 0.09 -13.29 16 15 N -0.62 -10.42 3.31 -173.63 -0.57 -10.99 16 16 C 0.12 1.74 6.37 -3.32 -0.02 1.72 16 17 C -0.11 -1.15 4.11 -89.19 -0.37 -1.52 16 18 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.05 0.54 6.23 -79.47 -0.50 0.05 16 20 C 0.60 5.71 8.09 -12.44 -0.10 5.61 16 21 N -0.83 -4.61 8.87 30.47 0.27 -4.34 16 22 O -0.51 -6.51 17.79 5.32 0.09 -6.41 16 23 N -0.24 -2.61 12.14 35.28 0.43 -2.18 16 24 O -0.17 -2.11 12.07 -11.37 -0.14 -2.25 16 25 C 0.03 0.37 4.84 -25.04 -0.12 0.24 16 26 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 27 C 0.11 1.44 5.52 -3.75 -0.02 1.42 16 28 C -0.06 -1.21 8.35 -39.61 -0.33 -1.54 16 29 C -0.23 -5.19 9.73 -39.27 -0.38 -5.58 16 30 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 31 H 0.13 3.45 5.87 -52.48 -0.31 3.14 16 32 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 34 H 0.09 1.36 8.06 -51.93 -0.42 0.95 16 35 H 0.41 1.66 8.50 -40.82 -0.35 1.31 16 36 H 0.41 1.47 8.93 -40.82 -0.36 1.11 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.10 1.37 5.39 -51.93 -0.28 1.09 16 39 H 0.10 1.75 5.79 -52.49 -0.30 1.45 16 40 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -31.06 344.00 -7.42 -38.49 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.08 Total: 8.82 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -4.25 Total: -7.13 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.71 Total: -35.81 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.05 Total: -21.95 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.06 -7.42 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275736981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.843 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds