Wall clock time and date at job start Tue Mar 31 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47320 * 340.52838 * 3 2 1 5 5 C 1.37095 * 119.99819 * 93.18440 * 4 3 2 6 6 H 1.08007 * 119.99607 * 163.77344 * 5 4 3 7 7 C 1.38949 * 120.00197 * 344.04818 * 5 4 3 8 8 N 1.31405 * 120.00147 * 335.76506 * 7 5 4 9 9 Si 1.86805 * 119.99985 * 155.76254 * 7 5 4 10 10 H 1.48498 * 109.47170 * 89.99944 * 9 7 5 11 11 H 1.48500 * 109.47102 * 209.99920 * 9 7 5 12 12 H 1.48496 * 109.47059 * 330.00111 * 9 7 5 13 13 C 1.34771 * 120.00112 * 273.18230 * 4 3 2 14 14 O 1.21291 * 120.00035 * 180.02562 * 13 4 3 15 15 C 1.50709 * 119.99986 * 0.02562 * 13 4 3 16 16 H 1.09002 * 109.47128 * 324.99982 * 15 13 4 17 17 C 1.52997 * 109.46693 * 84.99904 * 15 13 4 18 18 S 1.81402 * 109.46863 * 204.99779 * 15 13 4 19 19 O 1.42096 * 108.58075 * 299.48399 * 18 15 13 20 20 O 1.42105 * 108.57972 * 70.51841 * 18 15 13 21 21 C 1.81402 * 101.91839 * 184.99754 * 18 15 13 22 22 C 1.53178 * 109.54655 * 304.82744 * 21 18 15 23 23 C 1.53107 * 109.15764 * 183.23785 * 22 21 18 24 24 O 1.42905 * 109.48345 * 57.47637 * 23 22 21 25 25 C 1.42903 * 114.09683 * 298.88119 * 24 23 22 26 26 C 1.53096 * 109.41175 * 61.16584 * 25 24 23 27 27 H 4.40638 * 5.51372 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47217 * 220.52843 * 3 2 1 29 29 H 1.09007 * 109.47212 * 100.53138 * 3 2 1 30 30 H 0.97001 * 120.00287 * 179.97438 * 8 7 5 31 31 H 1.09009 * 109.46671 * 180.02562 * 17 15 13 32 32 H 1.08994 * 109.47310 * 299.99732 * 17 15 13 33 33 H 1.08994 * 109.47438 * 60.00807 * 17 15 13 34 34 H 1.09008 * 109.54336 * 65.00013 * 21 18 15 35 35 H 1.08998 * 109.52032 * 303.05789 * 22 21 18 36 36 H 1.09003 * 109.52395 * 63.24678 * 22 21 18 37 37 H 1.08992 * 109.40884 * 297.49203 * 23 22 21 38 38 H 1.08996 * 109.47994 * 177.49771 * 23 22 21 39 39 H 1.08994 * 109.48281 * 301.18410 * 25 24 23 40 40 H 1.09000 * 109.49013 * 181.14970 * 25 24 23 41 41 H 1.09002 * 109.52253 * 182.48724 * 26 25 24 42 42 H 1.08997 * 109.57612 * 62.32518 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3013 0.4604 5 6 3.4261 -2.2849 -0.4492 6 1 4.0228 -3.1350 -0.1528 7 6 2.9583 -2.1853 -1.7538 8 7 1.8920 -1.4637 -2.0162 9 14 3.8454 -3.0773 -3.1347 10 1 3.2700 -4.4368 -3.2958 11 1 3.6819 -2.3176 -4.4001 12 1 5.2894 -3.1868 -2.8060 13 6 3.2986 -1.5322 1.7781 14 8 3.7039 -2.6099 2.1592 15 6 2.9781 -0.4511 2.7780 16 1 3.2341 0.5211 2.3566 17 6 1.4842 -0.4871 3.1066 18 16 3.9373 -0.7251 4.2930 19 8 3.5806 -1.9905 4.8322 20 8 5.3040 -0.4475 4.0201 21 6 3.2914 0.5713 5.3851 22 6 3.4343 1.9349 4.7022 23 6 2.9618 3.0298 5.6624 24 8 3.7203 2.9631 6.8718 25 6 3.5858 1.7277 7.5774 26 6 4.0855 0.5807 6.6949 27 1 -1.0498 -0.0004 0.0000 28 1 3.0090 0.7820 0.6678 29 1 3.0093 0.1887 -1.0104 30 1 1.5656 -1.3938 -2.9269 31 1 1.2523 0.2951 3.8295 32 1 0.9079 -0.3225 2.1963 33 1 1.2282 -1.4592 3.5280 34 1 2.2397 0.3785 5.5976 35 1 4.4795 2.1050 4.4437 36 1 2.8265 1.9548 3.7976 37 1 1.9055 2.8832 5.8873 38 1 3.1028 4.0059 5.1984 39 1 2.5376 1.5640 7.8272 40 1 4.1762 1.7656 8.4929 41 1 3.9429 -0.3671 7.2141 42 1 5.1443 0.7215 6.4779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321648101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:19 Heat of formation + Delta-G solvation = -77.489755 kcal Electronic energy + Delta-G solvation = -27655.139843 eV Core-core repulsion = 23730.411537 eV Total energy + Delta-G solvation = -3924.728306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -39.50306 -39.05227 -36.66076 -35.69340 -35.38561 -34.41722 -33.14853 -31.88584 -31.45434 -31.25828 -26.75995 -25.80505 -25.26945 -24.20893 -23.62763 -20.96623 -19.77920 -18.37323 -18.06024 -17.47216 -16.70745 -16.54491 -16.37664 -16.09194 -15.71695 -15.38868 -14.98327 -14.78972 -14.36603 -14.13881 -14.10015 -13.98815 -13.29088 -12.98038 -12.79330 -12.68187 -12.24319 -12.21185 -11.91910 -11.76990 -11.71768 -11.66576 -11.56853 -11.54267 -11.28145 -11.16611 -11.06897 -10.66062 -10.51898 -10.43988 -10.20145 -9.60717 -9.48321 -9.38953 -9.01454 -8.72832 -8.07714 -6.51154 -4.00506 0.15690 2.97479 3.04869 3.18384 3.24953 3.41647 3.59123 3.66935 3.80043 3.85276 3.99620 4.06006 4.25007 4.47565 4.57659 4.66978 4.70680 4.87251 4.90692 5.03792 5.10482 5.12378 5.19618 5.25303 5.25750 5.34145 5.36404 5.44468 5.59337 5.64519 5.71562 5.81900 5.84475 6.09142 6.33990 6.52273 6.84912 6.88238 7.41566 7.78005 8.21305 8.63356 8.91098 9.12995 9.63654 10.48089 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.003968 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.356119 B = 7055.619144 C = 7712.680418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.110 4.110 3 C 0.227 3.773 4 N -0.417 5.417 5 C -0.319 4.319 6 H 0.111 0.889 7 C 0.036 3.964 8 N -0.852 5.852 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.266 1.266 13 C 0.464 3.536 14 O -0.568 6.568 15 C -0.591 4.591 16 H 0.141 0.859 17 C -0.145 4.145 18 S 2.444 3.556 19 O -0.914 6.914 20 O -0.934 6.934 21 C -0.589 4.589 22 C -0.149 4.149 23 C 0.069 3.931 24 O -0.380 6.380 25 C 0.071 3.929 26 C -0.143 4.143 27 H 0.200 0.800 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.271 0.729 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 11.814 11.652 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.112 4.112 3 C 0.103 3.897 4 N -0.134 5.134 5 C -0.446 4.446 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.488 5.488 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.250 3.750 14 O -0.452 6.452 15 C -0.702 4.702 16 H 0.158 0.842 17 C -0.203 4.203 18 S 2.623 3.377 19 O -0.911 6.911 20 O -0.931 6.931 21 C -0.696 4.696 22 C -0.187 4.187 23 C -0.008 4.008 24 O -0.299 6.299 25 C -0.007 4.007 26 C -0.182 4.182 27 H 0.217 0.783 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.488 10.837 11.871 16.142 hybrid contribution -0.979 -0.014 -1.298 1.626 sum -2.466 10.823 10.573 15.330 Atomic orbital electron populations 1.24251 0.95326 1.02497 1.05152 1.22916 0.94113 0.98059 0.96068 1.18348 0.84714 0.85156 1.01447 1.43615 1.54477 1.11604 1.03693 1.19775 1.31460 1.04368 0.88990 0.87184 1.25335 0.94835 0.97766 0.99051 1.70099 1.17874 1.39642 1.21212 0.85995 0.80433 0.79223 0.79549 1.20169 1.20656 1.19056 1.18589 0.86638 0.86991 0.82772 1.90698 1.51519 1.25177 1.77842 1.30418 1.11497 1.09245 1.19051 0.84157 1.21781 0.90519 1.03255 1.04711 1.07937 0.76326 0.76095 0.77303 1.93543 1.84280 1.36168 1.77067 1.93527 1.29786 1.85646 1.84100 1.30464 1.12191 1.15071 1.11878 1.22165 1.04896 0.92321 0.99366 1.22499 0.94811 0.98776 0.84753 1.87941 1.69967 1.35603 1.36374 1.22489 1.00747 0.83158 0.94313 1.22020 1.00824 1.01597 0.93732 0.78252 0.91673 0.87194 0.91811 0.91503 0.88547 0.90371 0.84307 0.88797 0.88976 0.92694 0.88101 0.92668 0.88144 0.89135 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.71 18.25 29.55 0.54 -4.17 16 2 C -0.11 -2.23 9.22 -37.12 -0.34 -2.57 16 3 C 0.23 4.67 4.94 -6.83 -0.03 4.63 16 4 N -0.42 -10.24 2.59 -117.93 -0.31 -10.54 16 5 C -0.32 -8.57 9.33 -14.93 -0.14 -8.71 16 6 H 0.11 3.14 7.39 -52.48 -0.39 2.75 16 7 C 0.04 0.90 4.81 -17.47 -0.08 0.82 16 8 N -0.85 -21.17 9.46 55.50 0.53 -20.64 16 9 Si 0.92 19.80 29.62 -169.99 -5.03 14.76 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.46 11.21 6.72 -10.98 -0.07 11.13 16 14 O -0.57 -16.08 15.12 -9.38 -0.14 -16.22 16 15 C -0.59 -10.36 1.75 -27.88 -0.05 -10.41 16 16 H 0.14 1.96 5.12 -51.92 -0.27 1.69 16 17 C -0.14 -2.16 8.80 37.16 0.33 -1.83 16 18 S 2.44 42.46 3.43 -107.50 -0.37 42.09 16 19 O -0.91 -19.26 17.21 -64.28 -1.11 -20.37 16 20 O -0.93 -18.82 18.04 -57.83 -1.04 -19.86 16 21 C -0.59 -6.63 1.96 -26.55 -0.05 -6.68 16 22 C -0.15 -1.43 5.01 -26.58 -0.13 -1.57 16 23 C 0.07 0.58 6.84 37.21 0.25 0.84 16 24 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 25 C 0.07 0.62 6.84 37.21 0.25 0.87 16 26 C -0.14 -1.51 5.42 -26.59 -0.14 -1.65 16 27 H 0.20 2.99 7.80 -54.10 -0.42 2.57 16 28 H 0.07 1.07 5.99 -51.93 -0.31 0.76 16 29 H 0.11 2.37 6.60 -51.93 -0.34 2.03 16 30 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.07 0.66 6.07 -51.92 -0.32 0.34 16 32 H 0.10 1.55 4.45 -51.93 -0.23 1.32 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.14 1.22 7.08 -51.92 -0.37 0.85 16 35 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.09 0.70 6.28 -51.93 -0.33 0.38 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -36.12 347.61 -7.78 -43.90 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.48 Total: 5.27 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 0.32 Total: -19.29 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.22 Total: -31.18 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -2.67 Total: -60.78 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: 42.46 SS G_CDS: -0.37 Total: 42.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.12 -7.78 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321648101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.590 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds