Wall clock time and date at job start Tue Mar 31 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47099 * 342.26258 * 3 2 1 5 5 C 1.37102 * 120.00057 * 86.63561 * 4 3 2 6 6 H 1.07998 * 119.99962 * 214.40378 * 5 4 3 7 7 C 1.38946 * 120.00000 * 34.40595 * 5 4 3 8 8 N 1.31417 * 119.99981 * 23.90740 * 7 5 4 9 9 Si 1.86794 * 120.00165 * 203.91047 * 7 5 4 10 10 H 1.48501 * 109.47248 * 84.98430 * 9 7 5 11 11 H 1.48497 * 109.47622 * 204.98597 * 9 7 5 12 12 H 1.48498 * 109.46921 * 324.98790 * 9 7 5 13 13 C 1.34784 * 120.00179 * 266.63405 * 4 3 2 14 14 O 1.21293 * 119.99917 * 0.02562 * 13 4 3 15 15 C 1.50701 * 120.00011 * 180.02562 * 13 4 3 16 16 H 1.08996 * 109.47161 * 40.00262 * 15 13 4 17 17 C 1.52999 * 109.47096 * 279.99897 * 15 13 4 18 18 S 1.81400 * 109.46695 * 159.99925 * 15 13 4 19 19 O 1.42093 * 108.58155 * 297.08378 * 18 15 13 20 20 O 1.42102 * 108.57968 * 68.11134 * 18 15 13 21 21 C 1.81401 * 101.91946 * 182.59482 * 18 15 13 22 22 C 1.53178 * 109.54531 * 179.78830 * 21 18 15 23 23 C 1.53101 * 109.15757 * 183.24243 * 22 21 18 24 24 O 1.42906 * 109.48831 * 57.47908 * 23 22 21 25 25 C 1.42910 * 114.09544 * 298.88977 * 24 23 22 26 26 C 1.53092 * 109.41579 * 61.15438 * 25 24 23 27 27 H 4.40641 * 5.51419 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.46579 * 222.26165 * 3 2 1 29 29 H 1.08994 * 109.47182 * 102.26654 * 3 2 1 30 30 H 0.97001 * 119.99805 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47128 * 302.44518 * 17 15 13 32 32 H 1.08998 * 109.46905 * 62.44007 * 17 15 13 33 33 H 1.09000 * 109.47003 * 182.44049 * 17 15 13 34 34 H 1.09000 * 109.54336 * 299.97190 * 21 18 15 35 35 H 1.09001 * 109.52212 * 303.06249 * 22 21 18 36 36 H 1.09002 * 109.52150 * 63.25079 * 22 21 18 37 37 H 1.09000 * 109.40861 * 297.49367 * 23 22 21 38 38 H 1.09004 * 109.49329 * 177.51161 * 23 22 21 39 39 H 1.09004 * 109.47489 * 301.17167 * 25 24 23 40 40 H 1.09000 * 109.48964 * 181.14692 * 25 24 23 41 41 H 1.09003 * 109.52006 * 182.49043 * 26 25 24 42 42 H 1.09003 * 109.57382 * 62.33055 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3146 0.4208 5 6 3.2982 -2.3134 -0.5042 6 1 3.1095 -3.3405 -0.2288 7 6 3.7064 -2.0041 -1.7958 8 7 4.3736 -0.8956 -2.0264 9 14 3.3070 -3.1639 -3.2045 10 1 1.9446 -2.8696 -3.7169 11 1 4.2971 -2.9773 -4.2954 12 1 3.3616 -4.5670 -2.7211 13 6 3.4243 -1.5430 1.7172 14 8 3.2795 -0.6595 2.5356 15 6 3.9278 -2.8959 2.1500 16 1 4.6274 -3.2780 1.4067 17 6 2.7477 -3.8605 2.2831 18 16 4.7686 -2.7445 3.7502 19 8 5.8994 -1.8992 3.5894 20 8 3.8012 -2.4281 4.7418 21 6 5.3496 -4.4400 4.0300 22 6 6.1045 -4.5100 5.3610 23 6 6.6601 -5.9241 5.5498 24 8 7.5049 -6.2557 4.4459 25 6 6.8399 -6.2533 3.1809 26 6 6.2934 -4.8519 2.8960 27 1 -1.0498 -0.0003 0.0003 28 1 3.0089 0.7614 0.6911 29 1 3.0093 0.2191 -1.0041 30 1 4.6582 -0.6795 -2.9282 31 1 2.0271 -3.4571 2.9944 32 1 2.2689 -3.9849 1.3118 33 1 3.1065 -4.8268 2.6377 34 1 4.4964 -5.1178 4.0586 35 1 6.9272 -3.7950 5.3511 36 1 5.4240 -4.2724 6.1787 37 1 5.8344 -6.6337 5.6016 38 1 7.2359 -5.9682 6.4742 39 1 6.0166 -6.9673 3.2019 40 1 7.5451 -6.5345 2.3988 41 1 5.7478 -4.8587 1.9523 42 1 7.1195 -4.1434 2.8341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321648102.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:25 Heat of formation + Delta-G solvation = -90.883336 kcal Electronic energy + Delta-G solvation = -27533.760600 eV Core-core repulsion = 23608.451504 eV Total energy + Delta-G solvation = -3925.309096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.41204 -39.05127 -36.59813 -35.62588 -35.31615 -34.27387 -33.07076 -32.39748 -31.43333 -31.16897 -26.84332 -25.66674 -25.23766 -24.17028 -23.50928 -20.89319 -19.70383 -18.60898 -18.12161 -17.38688 -16.89509 -16.36524 -16.24433 -15.81134 -15.48368 -15.35266 -15.06297 -14.84434 -14.43571 -14.19379 -14.05214 -13.95112 -13.30113 -13.02808 -12.72235 -12.59270 -12.19706 -12.18218 -11.89495 -11.68172 -11.65029 -11.63317 -11.50803 -11.44270 -11.24961 -11.19260 -11.06400 -10.84678 -10.59909 -10.42089 -10.13076 -9.87324 -9.56878 -9.50397 -9.22407 -8.83211 -7.92627 -6.65805 -4.33813 0.24002 2.94303 3.07196 3.07715 3.08952 3.31231 3.50012 3.64276 3.67320 3.87280 3.93789 4.06389 4.30793 4.58100 4.59975 4.69631 4.74053 4.81157 4.98148 5.12723 5.19008 5.24598 5.29512 5.32846 5.36707 5.44138 5.47335 5.52935 5.70319 5.74038 5.86062 5.92557 6.04999 6.31344 6.49958 6.68042 6.91656 6.96023 7.20548 7.54167 8.04862 8.37045 8.75708 9.08341 9.55372 10.36240 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.004660 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.636079 B = 6007.747538 C = 7197.371815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.153 4.153 3 C 0.199 3.801 4 N -0.415 5.415 5 C -0.353 4.353 6 H 0.099 0.901 7 C 0.048 3.952 8 N -0.847 5.847 9 Si 0.917 3.083 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.496 3.504 14 O -0.591 6.591 15 C -0.579 4.579 16 H 0.158 0.842 17 C -0.135 4.135 18 S 2.446 3.554 19 O -0.927 6.927 20 O -0.925 6.925 21 C -0.589 4.589 22 C -0.143 4.143 23 C 0.071 3.929 24 O -0.381 6.381 25 C 0.069 3.931 26 C -0.149 4.149 27 H 0.209 0.791 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.276 0.724 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -11.437 6.114 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.155 4.155 3 C 0.076 3.924 4 N -0.131 5.131 5 C -0.480 4.480 6 H 0.117 0.883 7 C -0.160 4.160 8 N -0.482 5.482 9 Si 0.743 3.257 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.282 3.718 14 O -0.477 6.477 15 C -0.690 4.690 16 H 0.175 0.825 17 C -0.193 4.193 18 S 2.626 3.374 19 O -0.924 6.924 20 O -0.922 6.922 21 C -0.696 4.696 22 C -0.182 4.182 23 C -0.007 4.007 24 O -0.299 6.299 25 C -0.008 4.008 26 C -0.187 4.187 27 H 0.226 0.774 28 H 0.107 0.893 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.927 -10.174 6.866 12.425 hybrid contribution -0.935 -1.199 -1.564 2.181 sum 0.992 -11.373 5.302 12.587 Atomic orbital electron populations 1.24594 0.95614 1.01997 1.04732 1.24158 0.95286 0.98661 0.97364 1.18691 0.82114 0.86605 1.04945 1.43190 1.53638 1.11266 1.04960 1.19550 1.47726 0.89351 0.91330 0.88321 1.25401 0.93664 0.97436 0.99495 1.69883 1.30172 1.25401 1.22760 0.86108 0.78779 0.80408 0.80436 1.19886 1.20639 1.19180 1.18981 0.81912 0.86407 0.84459 1.90698 1.59225 1.45587 1.52227 1.30208 1.11370 1.04718 1.22707 0.82481 1.21571 0.96169 0.95921 1.05612 1.07723 0.75842 0.76476 0.77379 1.93533 1.51158 1.61747 1.85994 1.93514 1.61279 1.81195 1.56195 1.30440 1.08731 1.26510 1.03894 1.22020 1.00918 1.00935 0.94296 1.22479 0.94688 0.93483 0.90044 1.87940 1.36922 1.89939 1.15121 1.22512 0.97579 0.94704 0.86016 1.22151 0.99714 1.00457 0.96427 0.77449 0.89304 0.84764 0.91333 0.90656 0.89024 0.91633 0.84469 0.89270 0.89072 0.92742 0.88199 0.92740 0.88047 0.88738 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.90 19.25 29.55 0.57 -4.33 16 2 C -0.15 -3.46 13.66 -37.12 -0.51 -3.97 16 3 C 0.20 4.78 5.55 -6.83 -0.04 4.74 16 4 N -0.41 -10.16 2.51 -117.94 -0.30 -10.45 16 5 C -0.35 -8.26 8.15 -14.93 -0.12 -8.38 16 6 H 0.10 2.10 5.55 -52.49 -0.29 1.81 16 7 C 0.05 1.12 4.95 -17.47 -0.09 1.04 16 8 N -0.85 -20.83 11.36 55.50 0.63 -20.20 16 9 Si 0.92 18.02 29.61 -169.99 -5.03 12.98 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 13 C 0.50 12.02 6.82 -10.98 -0.07 11.95 16 14 O -0.59 -16.09 15.29 0.83 0.01 -16.08 16 15 C -0.58 -10.81 1.90 -27.88 -0.05 -10.86 16 16 H 0.16 2.64 6.00 -51.93 -0.31 2.33 16 17 C -0.13 -2.04 8.77 37.16 0.33 -1.71 16 18 S 2.45 44.52 3.15 -107.50 -0.34 44.18 16 19 O -0.93 -20.10 17.84 -57.83 -1.03 -21.14 16 20 O -0.92 -19.36 17.51 -61.51 -1.08 -20.43 16 21 C -0.59 -7.18 2.28 -26.54 -0.06 -7.24 16 22 C -0.14 -1.62 5.44 -26.59 -0.14 -1.76 16 23 C 0.07 0.67 6.84 37.21 0.25 0.93 16 24 O -0.38 -4.34 10.77 -35.23 -0.38 -4.72 16 25 C 0.07 0.68 6.84 37.20 0.25 0.93 16 26 C -0.15 -1.69 5.12 -26.59 -0.14 -1.82 16 27 H 0.21 3.07 7.80 -54.10 -0.42 2.65 16 28 H 0.09 2.16 7.32 -51.93 -0.38 1.78 16 29 H 0.14 3.30 5.38 -51.93 -0.28 3.02 16 30 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 31 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.09 1.42 6.37 -51.93 -0.33 1.09 16 33 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 34 H 0.14 1.27 6.89 -51.92 -0.36 0.91 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.93 6.68 -51.93 -0.35 0.58 16 42 H 0.10 1.19 7.97 -51.93 -0.41 0.77 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -34.28 356.67 -7.52 -41.80 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.56 Total: 9.17 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 0.18 Total: -20.49 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.33 Total: -30.66 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -2.48 Total: -62.37 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: 44.52 SS G_CDS: -0.34 Total: 44.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.28 -7.52 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321648102.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.080 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds