Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00431 * 2 1 4 4 C 1.50694 * 109.46774 * 85.38790 * 3 2 1 5 5 N 1.30477 * 125.64416 * 275.99389 * 4 3 2 6 6 C 1.34167 * 109.26564 * 180.02562 * 5 4 3 7 7 C 1.34788 * 108.01831 * 359.97438 * 6 5 4 8 8 Cl 1.73609 * 126.59798 * 179.74129 * 7 6 5 9 9 N 1.35167 * 125.64616 * 96.00122 * 4 3 2 10 10 C 1.46501 * 126.39528 * 0.03030 * 9 4 3 11 11 C 1.34782 * 119.99584 * 180.02562 * 2 1 3 12 12 O 1.21581 * 119.99868 * 179.97438 * 11 2 1 13 13 N 1.34778 * 119.99953 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00156 * 180.02562 * 13 11 2 15 15 C 1.50697 * 109.47248 * 179.97438 * 14 13 11 16 16 O 1.21289 * 120.00359 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99776 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99960 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99842 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00292 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99788 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00330 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47028 * 89.99876 * 22 20 18 24 24 H 1.48500 * 109.47119 * 209.99957 * 22 20 18 25 25 H 1.48505 * 109.46822 * 330.00049 * 22 20 18 26 26 H 1.09003 * 109.46930 * 95.38717 * 1 2 3 27 27 H 1.08991 * 109.47603 * 215.39285 * 1 2 3 28 28 H 1.09003 * 109.47053 * 335.39472 * 1 2 3 29 29 H 1.09003 * 109.46820 * 325.38675 * 3 2 1 30 30 H 1.08996 * 109.47031 * 205.38728 * 3 2 1 31 31 H 1.08009 * 125.98642 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.47032 * 275.11943 * 10 9 4 33 33 H 1.08995 * 109.47436 * 35.11836 * 10 9 4 34 34 H 1.09001 * 109.46839 * 155.11844 * 10 9 4 35 35 H 0.97002 * 119.99958 * 0.02562 * 13 11 2 36 36 H 1.08997 * 109.47186 * 300.00300 * 14 13 11 37 37 H 1.09001 * 109.46790 * 59.99903 * 14 13 11 38 38 H 0.97004 * 120.00275 * 0.02562 * 17 15 14 39 39 H 0.97002 * 119.99966 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3498 1.7607 1.4162 5 7 1.4616 2.4457 2.0827 6 6 1.9362 2.7107 3.3094 7 6 3.1662 2.1682 3.4067 8 17 4.2180 2.2289 4.7866 9 7 3.4291 1.5656 2.2062 10 6 4.6522 0.8449 1.8445 11 6 2.1388 -1.1673 -0.0005 12 8 3.3546 -1.1674 -0.0010 13 7 1.4648 -2.3345 -0.0005 14 6 2.1972 -3.6032 -0.0005 15 6 1.2178 -4.7486 0.0001 16 8 0.0253 -4.5269 0.0001 17 7 1.6670 -6.0193 0.0007 18 6 0.7760 -7.0613 0.0019 19 1 -0.2858 -6.8639 0.0018 20 6 1.2391 -8.3714 0.0020 21 7 2.5311 -8.6116 0.0015 22 14 0.0251 -9.7911 0.0028 23 1 -0.2971 -10.1676 -1.3971 24 1 0.6252 -10.9552 0.7028 25 1 -1.2179 -9.3792 0.7032 26 1 -0.3633 -0.0965 -1.0232 27 1 -0.3634 -0.8377 0.5951 28 1 -0.3633 0.9344 0.4279 29 1 1.6468 2.0062 -0.5838 30 1 3.1832 1.1190 -0.4406 31 1 1.4222 3.2614 4.0834 32 1 4.5100 -0.2218 2.0179 33 1 4.8763 1.0150 0.7915 34 1 5.4802 1.2051 2.4551 35 1 0.4948 -2.3344 -0.0005 36 1 2.8239 -3.6610 -0.8905 37 1 2.8238 -3.6610 0.8895 38 1 2.6207 -6.1966 0.0012 39 1 2.8544 -9.5261 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325033304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = 2.099710 kcal Electronic energy + Delta-G solvation = -25442.611233 eV Core-core repulsion = 21448.042886 eV Total energy + Delta-G solvation = -3994.568347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.43902 -40.10253 -38.28885 -37.05423 -35.69920 -34.59719 -34.29052 -33.75752 -31.43059 -30.81545 -27.94516 -27.53190 -27.03561 -25.58624 -24.23258 -21.80730 -20.72108 -19.80079 -19.58237 -18.34785 -17.82975 -17.56524 -16.69623 -16.06564 -15.80163 -15.63122 -15.20846 -14.72818 -14.64388 -14.38019 -14.15705 -13.86348 -13.53854 -13.52364 -13.21101 -13.00557 -12.81586 -12.59211 -12.27112 -12.14812 -12.00795 -11.94010 -11.77391 -11.65408 -11.14653 -10.48030 -10.35747 -10.33706 -10.14098 -9.88219 -9.66298 -9.09819 -8.70950 -8.66407 -8.55361 -8.12920 -6.54160 -3.96199 1.34008 1.49585 2.43942 2.67339 2.97733 3.09654 3.20573 3.21597 3.26009 3.71340 3.97320 4.11412 4.16455 4.51942 4.59096 4.84157 4.98209 5.02214 5.08861 5.14485 5.23940 5.27139 5.42749 5.47152 5.70108 5.81703 5.86709 5.93826 6.02970 6.20654 6.25564 6.65976 6.70551 6.88673 7.43577 7.66671 7.89400 8.02412 8.41898 8.62239 9.01990 9.36223 9.83983 10.62707 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002416 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.234805 B =11588.974794 C =12192.846387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.627 5.627 3 C 0.219 3.781 4 C 0.207 3.793 5 N -0.472 5.472 6 C 0.004 3.996 7 C 0.012 3.988 8 Cl -0.011 7.011 9 N -0.437 5.437 10 C 0.071 3.929 11 C 0.708 3.292 12 O -0.599 6.599 13 N -0.720 5.720 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.597 6.597 17 N -0.548 5.548 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.179 0.821 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.396 0.604 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 21.443 3.170 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.365 5.365 3 C 0.093 3.907 4 C -0.057 4.057 5 N -0.191 5.191 6 C -0.147 4.147 7 C -0.130 4.130 8 Cl 0.018 6.982 9 N -0.121 5.121 10 C -0.071 4.071 11 C 0.409 3.591 12 O -0.478 6.478 13 N -0.378 5.378 14 C -0.001 4.001 15 C 0.213 3.787 16 O -0.484 6.484 17 N -0.183 5.183 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.197 0.803 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.230 0.770 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.502 21.480 2.931 21.960 hybrid contribution 0.581 -1.224 0.703 1.526 sum 4.083 20.256 3.633 20.981 Atomic orbital electron populations 1.21827 0.78713 1.04033 1.02055 1.46910 1.06953 1.03928 1.78702 1.19540 0.99717 0.84793 0.86625 1.23800 0.83859 1.01133 0.96903 1.70373 1.28032 1.16224 1.04470 1.22144 0.91555 1.04718 0.96245 1.21845 0.96308 1.09217 0.85620 1.98381 1.65888 1.97538 1.36443 1.45184 1.16328 1.40308 1.10299 1.22220 0.83532 0.98183 1.03134 1.15799 0.85207 0.80351 0.77779 1.90841 1.11395 1.86459 1.59118 1.44922 1.11220 1.03588 1.78034 1.20799 0.94025 0.82159 1.03071 1.19741 0.89141 0.84157 0.85644 1.90495 1.16492 1.84071 1.57343 1.41785 1.09993 1.03929 1.62612 1.19729 0.91420 0.84019 1.48260 0.87669 1.25327 0.96698 0.98913 0.96758 1.69615 1.12559 1.22006 1.49309 0.85813 0.79946 0.79770 0.78513 1.20238 1.20788 1.19296 0.92135 0.91236 0.89746 0.87103 0.87696 0.80348 0.88933 0.88571 0.89901 0.75174 0.89887 0.90155 0.77041 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.07 59.85 0.60 1.38 16 2 N -0.63 -7.55 2.86 -188.75 -0.54 -8.09 16 3 C 0.22 2.22 5.80 -5.20 -0.03 2.19 16 4 C 0.21 2.43 7.48 -155.32 -1.16 1.27 16 5 N -0.47 -5.90 11.25 -10.76 -0.12 -6.03 16 6 C 0.00 0.05 11.86 -17.75 -0.21 -0.16 16 7 C 0.01 0.13 7.49 -16.52 -0.12 0.01 16 8 Cl -0.01 -0.10 28.82 -51.86 -1.49 -1.60 16 9 N -0.44 -5.02 3.16 -117.77 -0.37 -5.39 16 10 C 0.07 0.70 10.04 59.85 0.60 1.30 16 11 C 0.71 10.75 8.28 -86.91 -0.72 10.03 16 12 O -0.60 -9.90 14.37 5.29 0.08 -9.83 16 13 N -0.72 -11.83 5.39 -66.42 -0.36 -12.19 16 14 C 0.13 2.30 6.15 -5.20 -0.03 2.26 16 15 C 0.43 9.64 7.85 -10.99 -0.09 9.55 16 16 O -0.60 -15.08 15.24 5.55 0.08 -15.00 16 17 N -0.55 -13.39 5.29 -10.96 -0.06 -13.45 16 18 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 19 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.64 13.05 55.50 0.72 -22.92 16 22 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.78 6.66 -51.93 -0.35 0.43 16 28 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 29 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.10 1.03 6.16 -51.93 -0.32 0.71 16 31 H 0.18 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.09 1.09 7.45 -51.93 -0.39 0.70 16 33 H 0.10 0.85 7.15 -51.93 -0.37 0.47 16 34 H 0.08 0.67 7.77 -51.93 -0.40 0.26 16 35 H 0.41 6.74 5.29 -40.82 -0.22 6.53 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.40 9.28 7.90 -40.82 -0.32 8.96 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -31.67 352.98 -7.57 -39.24 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -4.41 Total: 14.52 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: -1.40 Total: 20.07 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.72 Total: -68.07 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.16 Total: -24.82 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.49 Total: -1.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.67 -7.57 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325033304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.336 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds