Wall clock time and date at job start Tue Mar 31 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37625 * 119.79875 * 2 1 4 4 N 1.32478 * 121.50590 * 0.30302 * 3 2 1 5 5 C 1.31497 * 121.70065 * 180.23526 * 4 3 2 6 6 C 1.40063 * 121.39916 * 359.42405 * 5 4 3 7 7 C 1.47578 * 120.40715 * 180.30635 * 6 5 4 8 8 O 1.21598 * 120.00353 * 42.57751 * 7 6 5 9 9 N 1.34781 * 119.99393 * 222.58237 * 7 6 5 10 10 C 1.36911 * 119.99353 * 182.46500 * 9 7 6 11 11 H 1.07995 * 120.00176 * 348.86499 * 10 9 7 12 12 C 1.39032 * 119.99558 * 168.86437 * 10 9 7 13 13 N 1.31374 * 120.00235 * 3.23611 * 12 10 9 14 14 Si 1.86801 * 119.99688 * 183.24033 * 12 10 9 15 15 H 1.48504 * 109.47308 * 89.99924 * 14 12 10 16 16 H 1.48496 * 109.46995 * 210.00069 * 14 12 10 17 17 H 1.48504 * 109.46816 * 329.99754 * 14 12 10 18 18 C 1.46493 * 120.00631 * 2.46273 * 9 7 6 19 19 C 1.47196 * 109.47324 * 263.43077 * 18 9 7 20 20 N 6.76661 * 157.01035 * 348.03494 * 2 1 3 21 21 C 1.39874 * 119.18655 * 0.28669 * 6 5 4 22 22 C 1.39356 * 117.75251 * 359.97438 * 21 6 5 23 23 C 1.46744 * 121.96679 * 180.02562 * 22 21 6 24 24 O 1.34917 * 120.81196 * 359.97438 * 23 22 21 25 25 N 1.32224 * 118.38331 * 179.97438 * 23 22 21 26 26 C 1.33383 * 121.59613 * 0.04661 * 25 23 22 27 27 O 1.21850 * 118.47336 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.46779 * 90.00209 * 1 2 3 29 29 H 1.09003 * 109.47184 * 209.99781 * 1 2 3 30 30 H 1.08996 * 109.46850 * 329.99995 * 1 2 3 31 31 H 1.08001 * 119.29928 * 179.70902 * 5 4 3 32 32 H 0.96997 * 120.00058 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46823 * 23.42856 * 18 9 7 34 34 H 1.08998 * 109.47538 * 143.42605 * 18 9 7 35 35 H 1.07999 * 121.12535 * 179.97438 * 21 6 5 36 36 H 0.96704 * 114.00456 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1943 0.0000 4 7 1.5129 2.3563 0.0060 5 6 2.1624 3.4997 0.0014 6 6 3.5624 3.5436 0.0020 7 6 4.2690 4.8392 0.0036 8 8 3.8792 5.7435 0.7168 9 7 5.3465 5.0199 -0.7857 10 6 6.0323 6.2043 -0.7470 11 1 5.6146 7.0534 -0.2265 12 6 7.2664 6.3138 -1.3778 13 7 7.7454 5.3013 -2.0644 14 14 8.2436 7.9006 -1.2489 15 1 9.1344 7.8384 -0.0623 16 1 9.0632 8.0780 -2.4744 17 1 7.3100 9.0467 -1.1075 18 6 5.7839 3.9493 -1.6848 19 6 6.8620 3.1794 -1.0431 20 7 7.6942 2.5854 -0.5479 21 6 4.2824 2.3444 0.0014 22 6 3.5592 1.1532 0.0009 23 6 4.2201 -0.1569 0.0008 24 8 5.5659 -0.2521 0.0008 25 7 3.4646 -1.2421 0.0008 26 6 2.1329 -1.1664 -0.0001 27 8 1.4922 -2.2029 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6046 4.4245 0.0018 32 1 8.6062 5.3778 -2.5047 33 1 4.9437 3.2888 -1.8989 34 1 6.1512 4.3831 -2.6148 35 1 5.3624 2.3417 0.0014 36 1 5.8961 -1.1610 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338132090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:44 Heat of formation + Delta-G solvation = 29.623866 kcal Electronic energy + Delta-G solvation = -27881.316766 eV Core-core repulsion = 23754.541712 eV Total energy + Delta-G solvation = -4126.775055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.096 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -42.06792 -40.02242 -39.01934 -38.59420 -36.21689 -35.88194 -34.95521 -34.57330 -32.95121 -31.86865 -30.66170 -27.79358 -27.61731 -25.80231 -25.20136 -24.12288 -22.75966 -21.02349 -20.01853 -19.64527 -18.28928 -17.39576 -17.30557 -16.83724 -16.51224 -16.11063 -16.02890 -15.77317 -15.10977 -14.81068 -14.68434 -14.38914 -14.08175 -13.92661 -13.62813 -13.55646 -13.15297 -12.84686 -12.75337 -12.47029 -12.10512 -11.80184 -11.47665 -11.41374 -11.08971 -10.93666 -10.77931 -10.71347 -10.56211 -10.46992 -10.37961 -9.95658 -9.74495 -9.55516 -9.04145 -8.51179 -8.44198 -6.69132 -4.28704 0.01827 0.57574 1.41310 2.15300 2.63497 2.77174 3.01460 3.08281 3.11216 3.41082 3.45822 3.68913 3.71182 3.81543 3.88015 3.95624 4.27706 4.54043 4.56218 4.65043 4.71606 4.96537 5.04712 5.19104 5.25080 5.28393 5.45793 5.59460 5.73016 5.80705 5.85305 6.13932 6.23964 6.62248 6.77677 7.18997 7.37399 7.53783 7.61546 7.92344 7.98599 8.50960 8.68994 8.86462 9.37095 10.24990 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.020910 B = 0.003926 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.744726 B = 7129.844890 C = 8215.099313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.535 5.535 3 C 0.412 3.588 4 N -0.513 5.513 5 C 0.232 3.768 6 C -0.188 4.188 7 C 0.487 3.513 8 O -0.566 6.566 9 N -0.426 5.426 10 C -0.297 4.297 11 H 0.118 0.882 12 C 0.031 3.969 13 N -0.886 5.886 14 Si 0.942 3.058 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.204 3.796 19 C 0.244 3.756 20 N -0.466 5.466 21 C 0.033 3.967 22 C -0.228 4.228 23 C 0.491 3.509 24 O -0.425 6.425 25 N -0.611 5.611 26 C 0.676 3.324 27 O -0.524 6.524 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.184 0.816 32 H 0.278 0.722 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 -5.497 -1.271 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.260 5.260 3 C 0.176 3.824 4 N -0.228 5.228 5 C 0.069 3.931 6 C -0.195 4.195 7 C 0.276 3.724 8 O -0.449 6.449 9 N -0.144 5.144 10 C -0.423 4.423 11 H 0.135 0.865 12 C -0.171 4.171 13 N -0.527 5.527 14 Si 0.768 3.232 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.190 1.190 18 C 0.077 3.923 19 C -0.073 4.073 20 N -0.147 5.147 21 C 0.005 3.995 22 C -0.237 4.237 23 C 0.281 3.719 24 O -0.218 6.218 25 N -0.366 5.366 26 C 0.377 3.623 27 O -0.397 6.397 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -7.476 -6.946 -0.317 10.210 hybrid contribution 1.254 0.977 -0.279 1.614 sum -6.222 -5.969 -0.596 8.643 Atomic orbital electron populations 1.21941 0.75735 1.04823 1.03756 1.45970 1.10214 1.04145 1.65664 1.18327 0.86265 0.87375 0.90424 1.67349 1.38904 0.96373 1.20161 1.23127 0.90568 0.94893 0.84536 1.21245 0.95469 0.95367 1.07436 1.17376 0.84180 0.86583 0.84301 1.90689 1.68004 1.42864 1.43363 1.43616 1.24148 1.13235 1.33387 1.19983 0.99831 0.89681 1.32854 0.86478 1.25409 0.96664 0.99709 0.95365 1.69657 1.20351 1.30504 1.32160 0.85637 0.79262 0.80224 0.78056 1.20116 1.20525 1.18973 1.19474 0.89208 0.87288 0.96297 1.29139 0.94060 0.91169 0.92897 1.80987 1.10842 1.13365 1.09465 1.22294 1.01832 0.89425 0.85928 1.19183 0.92122 0.92834 1.19513 1.21664 0.84480 0.88385 0.77325 1.85023 1.14539 1.37377 1.84863 1.69523 1.05187 1.28350 1.33582 1.17018 0.84356 0.82633 0.78298 1.90949 1.65440 1.31048 1.52291 0.90999 0.89233 0.88784 0.79875 0.91058 0.90900 0.82352 0.82142 0.71755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.14 59.85 0.61 1.47 16 2 N -0.53 -7.44 3.03 -128.52 -0.39 -7.82 16 3 C 0.41 5.77 7.37 -155.54 -1.15 4.62 16 4 N -0.51 -6.81 9.21 -11.85 -0.11 -6.92 16 5 C 0.23 3.13 10.80 -17.01 -0.18 2.95 16 6 C -0.19 -2.99 4.98 -104.79 -0.52 -3.51 16 7 C 0.49 9.73 7.25 -12.45 -0.09 9.64 16 8 O -0.57 -13.00 16.57 5.28 0.09 -12.91 16 9 N -0.43 -8.87 2.60 -119.11 -0.31 -9.18 16 10 C -0.30 -6.82 9.48 -14.99 -0.14 -6.97 16 11 H 0.12 2.82 7.20 -52.49 -0.38 2.44 16 12 C 0.03 0.68 5.38 -17.45 -0.09 0.59 16 13 N -0.89 -19.57 8.07 55.50 0.45 -19.12 16 14 Si 0.94 18.25 29.55 -169.99 -5.02 13.23 16 15 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 18 C 0.20 3.71 4.76 -6.83 -0.03 3.68 16 19 C 0.24 4.84 10.51 -20.76 -0.22 4.62 16 20 N -0.47 -9.82 18.47 42.16 0.78 -9.04 16 21 C 0.03 0.51 7.33 -38.55 -0.28 0.23 16 22 C -0.23 -3.24 5.88 -104.97 -0.62 -3.85 16 23 C 0.49 6.57 8.12 -13.95 -0.11 6.45 16 24 O -0.42 -4.79 13.07 -16.47 -0.22 -5.00 16 25 N -0.61 -9.16 10.35 -15.18 -0.16 -9.32 16 26 C 0.68 10.86 8.30 -88.48 -0.73 10.13 16 27 O -0.52 -9.61 16.59 5.05 0.08 -9.53 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.95 7.33 -51.93 -0.38 0.57 16 30 H 0.09 0.90 7.41 -51.93 -0.38 0.52 16 31 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.28 6.03 8.31 -40.82 -0.34 5.69 16 33 H 0.07 1.09 5.66 -51.93 -0.29 0.79 16 34 H 0.16 3.01 5.99 -51.93 -0.31 2.70 16 35 H 0.16 2.67 4.03 -52.49 -0.21 2.46 16 36 H 0.42 2.83 8.99 45.56 0.41 3.24 16 LS Contribution 320.25 15.07 4.83 4.83 Total: -1.00 -30.08 320.25 -5.08 -35.16 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -1.53 Total: 5.60 kcal Atomic # 6 Polarization: 33.60 SS G_CDS: -3.57 Total: 30.03 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.26 Total: -61.41 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.44 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.08 -5.08 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338132090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.782 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds