Wall clock time and date at job start Tue Mar 31 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86806 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47086 * 274.98142 * 3 2 1 5 5 H 1.48498 * 109.46892 * 34.98211 * 3 2 1 6 6 H 1.48501 * 109.47213 * 154.97906 * 3 2 1 7 7 C 1.38989 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99957 * 185.93581 * 7 2 1 9 9 N 1.37323 * 119.99808 * 5.94043 * 7 2 1 10 10 C 1.36487 * 126.06938 * 174.13146 * 9 7 2 11 11 C 1.35685 * 107.50904 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.07921 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99526 * 180.02562 * 12 11 10 14 14 O 1.21304 * 120.00406 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.00030 * 179.97438 * 13 12 11 16 16 N 1.46494 * 109.46979 * 179.97438 * 15 13 12 17 17 N 1.40157 * 126.01540 * 265.22887 * 16 15 13 18 18 H 0.97006 * 125.45654 * 0.04655 * 17 16 15 19 19 C 1.34330 * 109.09215 * 180.19917 * 17 16 15 20 20 C 1.38396 * 108.49392 * 359.61000 * 19 17 16 21 21 C 1.46816 * 134.77286 * 180.24835 * 20 19 17 22 22 O 1.22106 * 121.29191 * 0.02562 * 21 20 19 23 23 N 1.34401 * 117.40499 * 179.97438 * 21 20 19 24 24 C 1.31373 * 120.94880 * 359.97438 * 23 21 20 25 25 N 1.32041 * 123.73888 * 0.02562 * 24 23 21 26 26 C 1.32381 * 121.67442 * 359.97438 * 25 24 23 27 27 C 1.40641 * 107.83346 * 0.26317 * 11 10 9 28 28 N 1.30913 * 108.38726 * 359.55306 * 27 11 10 29 29 H 0.97003 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08006 * 126.24456 * 0.04596 * 10 9 7 31 31 H 0.96991 * 120.00620 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47002 * 59.99490 * 15 13 12 33 33 H 1.09004 * 109.46643 * 300.00099 * 15 13 12 34 34 H 1.07995 * 125.75518 * 179.87868 * 19 17 16 35 35 H 1.07997 * 118.12955 * 179.97438 * 24 23 21 36 36 H 1.07998 * 125.80808 * 179.70121 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5010 2.6200 0.8027 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2037 -0.0005 8 1 3.0836 -1.2062 0.0962 9 7 1.3268 -2.3897 -0.1242 10 6 1.8863 -3.6280 -0.2521 11 6 0.8733 -4.5258 -0.3467 12 7 1.0111 -5.9175 -0.4907 13 6 -0.0845 -6.6981 -0.5738 14 8 -1.1894 -6.2000 -0.5239 15 6 0.0632 -8.1899 -0.7286 16 7 -1.2635 -8.8076 -0.7946 17 7 -1.9714 -9.3569 0.2832 18 1 -1.6612 -9.3900 1.2018 19 6 -3.1466 -9.8331 -0.1599 20 6 -3.2306 -9.5976 -1.5211 21 6 -4.2356 -9.8666 -2.5570 22 8 -5.2894 -10.4221 -2.2892 23 7 -3.9509 -9.4765 -3.8113 24 6 -2.8155 -8.8780 -4.0914 25 7 -1.8836 -8.6158 -3.1934 26 6 -2.0331 -8.9453 -1.9200 27 6 -0.3390 -3.8158 -0.2806 28 7 -0.0652 -2.5432 -0.1419 29 1 -0.4850 0.8401 0.0004 30 1 2.9425 -3.8524 -0.2738 31 1 1.8946 -6.3158 -0.5309 32 1 0.6087 -8.5916 0.1253 33 1 0.6117 -8.4074 -1.6451 34 1 -3.9009 -10.3144 0.4448 35 1 -2.6336 -8.5843 -5.1146 36 1 -1.3276 -4.2474 -0.3329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361689022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:03 Heat of formation + Delta-G solvation = 164.855158 kcal Electronic energy + Delta-G solvation = -26455.604668 eV Core-core repulsion = 22366.986433 eV Total energy + Delta-G solvation = -4088.618235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50833 -40.16743 -39.31679 -38.74408 -36.96291 -34.56741 -34.15049 -33.32898 -32.45995 -30.66451 -30.42750 -29.00661 -27.37432 -25.20664 -24.92875 -23.42810 -22.06494 -21.13367 -20.59753 -19.66420 -19.43772 -18.55558 -17.95444 -17.15731 -16.68977 -16.33370 -15.89207 -15.57081 -15.52819 -15.48196 -14.90260 -14.46100 -14.39356 -14.05934 -13.80659 -13.61518 -13.50057 -13.04870 -12.72403 -12.61972 -11.80582 -11.62496 -11.37087 -11.26797 -11.08928 -10.68056 -10.61052 -10.41892 -9.96936 -9.78411 -9.44593 -9.32221 -8.96100 -8.66946 -8.21695 -8.05581 -6.91397 -6.68264 -4.36981 0.03945 0.43058 1.56974 2.37715 2.40190 2.72423 2.90697 2.97098 3.03499 3.18314 3.50097 3.74608 3.84405 3.89473 4.13401 4.26338 4.31500 4.39097 4.43294 4.57594 4.71412 4.79286 4.85500 4.89480 5.01073 5.72550 5.91107 6.06860 6.23894 6.38583 6.50614 6.65657 6.79396 6.85453 7.07900 7.36369 7.70886 7.86292 8.08633 8.20104 8.34783 8.59195 8.67586 9.22642 9.50994 10.27688 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.024616 B = 0.002435 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.191722 B =11496.565147 C =11877.408501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.324 4.324 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.081 4.081 11 C -0.067 4.067 12 N -0.611 5.611 13 C 0.473 3.527 14 O -0.517 6.517 15 C 0.118 3.882 16 N -0.350 5.350 17 N -0.423 5.423 18 H 0.460 0.540 19 C 0.257 3.743 20 C -0.385 4.385 21 C 0.564 3.436 22 O -0.526 6.526 23 N -0.644 5.644 24 C 0.430 3.570 25 N -0.629 5.629 26 C 0.478 3.522 27 C -0.028 4.028 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.147 0.853 31 H 0.399 0.601 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.222 0.778 35 H 0.194 0.806 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -17.663 3.589 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.233 4.233 11 C -0.173 4.173 12 N -0.254 5.254 13 C 0.255 3.745 14 O -0.393 6.393 15 C -0.006 4.006 16 N -0.145 5.145 17 N -0.131 5.131 18 H 0.309 0.691 19 C 0.105 3.895 20 C -0.405 4.405 21 C 0.350 3.650 22 O -0.404 6.404 23 N -0.387 5.387 24 C 0.139 3.861 25 N -0.368 5.368 26 C 0.224 3.776 27 C -0.204 4.204 28 N -0.092 5.092 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.232 0.768 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.238 0.762 35 H 0.210 0.790 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.146 -15.980 3.375 16.850 hybrid contribution 1.583 -0.335 1.277 2.061 sum 5.729 -16.315 4.651 17.906 Atomic orbital electron populations 1.70214 1.06223 1.28244 1.34539 1.25674 0.95711 1.00409 0.95325 0.85792 0.79412 0.79854 0.79000 1.19501 1.20026 1.18735 1.19917 0.92198 0.80625 1.52883 0.86448 1.44589 1.04028 1.03790 1.38124 1.21252 0.96817 0.85754 1.19445 1.17185 0.94389 0.81142 1.24559 1.42303 1.07752 1.05532 1.69828 1.20367 0.85564 0.88045 0.80492 1.90711 1.25293 1.73939 1.49357 1.21901 0.78823 0.92111 1.07799 1.45935 1.15076 1.54558 0.98919 1.44001 1.14104 1.49590 1.05441 0.69062 1.23177 0.84341 0.86829 0.95152 1.22425 1.03418 1.18352 0.96281 1.18240 0.84890 0.78589 0.83284 1.90767 1.25470 1.41246 1.82903 1.69723 1.22658 1.25338 1.21023 1.24594 0.82097 0.82115 0.97330 1.67327 1.36763 1.34726 0.97995 1.18474 0.85243 0.86281 0.87574 1.24064 0.97832 0.91009 1.07486 1.78297 0.90274 1.15011 1.25610 0.91283 0.83555 0.76769 0.85840 0.83889 0.76186 0.78966 0.80996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.83 11.84 55.50 0.66 -20.17 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.22 29.56 -169.99 -5.02 13.20 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.32 -8.19 10.24 -14.81 -0.15 -8.34 16 8 H 0.12 2.63 7.84 -52.49 -0.41 2.22 16 9 N -0.14 -3.61 3.74 -11.41 -0.04 -3.65 16 10 C -0.08 -1.76 11.49 -16.39 -0.19 -1.95 16 11 C -0.07 -1.40 6.90 -83.84 -0.58 -1.97 16 12 N -0.61 -8.63 5.47 -10.00 -0.05 -8.68 16 13 C 0.47 6.37 7.87 -10.98 -0.09 6.28 16 14 O -0.52 -9.71 13.58 5.54 0.08 -9.63 16 15 C 0.12 0.84 6.94 -5.19 -0.04 0.80 16 16 N -0.35 -3.16 3.16 -61.30 -0.19 -3.35 16 17 N -0.42 -2.18 7.14 30.93 0.22 -1.95 16 18 H 0.46 0.27 8.96 -182.55 -1.64 -1.36 16 19 C 0.26 1.77 12.05 -16.40 -0.20 1.57 16 20 C -0.39 -5.00 6.37 -104.90 -0.67 -5.67 16 21 C 0.56 9.86 8.00 -12.96 -0.10 9.76 16 22 O -0.53 -10.52 18.03 4.82 0.09 -10.43 16 23 N -0.64 -11.13 10.50 -15.03 -0.16 -11.28 16 24 C 0.43 6.14 12.18 -92.30 -1.12 5.02 16 25 N -0.63 -9.10 10.39 -13.70 -0.14 -9.24 16 26 C 0.48 6.24 8.09 -155.79 -1.26 4.98 16 27 C -0.03 -0.71 10.85 -17.04 -0.18 -0.89 16 28 N -0.26 -7.31 10.42 30.80 0.32 -6.99 16 29 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.15 2.56 8.06 -52.48 -0.42 2.14 16 31 H 0.40 3.72 8.82 -40.82 -0.36 3.36 16 32 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.22 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.17 4.33 5.92 -52.49 -0.31 4.02 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -44.05 331.92 -7.90 -51.94 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.97 Total: 4.60 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -4.68 Total: 10.65 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: 0.61 Total: -65.33 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -44.05 -7.90 -51.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361689022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.799 kcal (2) G-P(sol) polarization free energy of solvation -44.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds