Wall clock time and date at job start Tue Mar 31 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48506 * 109.47193 * 240.00009 * 3 2 1 5 5 H 1.48499 * 109.47404 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46923 * 120.00035 * 3 2 1 7 7 C 1.37877 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00015 * 0.02562 * 7 2 1 10 10 O 1.42900 * 113.28294 * 46.92692 * 9 7 2 11 11 C 1.53496 * 114.20982 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98790 * 139.65326 * 11 9 7 13 13 C 1.34777 * 136.05823 * 152.62274 * 12 11 9 14 14 O 1.21278 * 119.99941 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99947 * 179.97438 * 13 12 11 16 16 H 1.08995 * 115.55211 * 327.18228 * 15 13 12 17 17 C 1.52985 * 117.49585 * 181.50904 * 15 13 12 18 18 C 1.53118 * 117.49139 * 112.84020 * 15 13 12 19 19 C 1.52934 * 117.32190 * 0.07623 * 18 15 13 20 20 C 1.53032 * 109.68834 * 149.67641 * 19 18 15 21 21 S 1.81562 * 109.20063 * 60.77124 * 20 19 18 22 22 O 1.42096 * 108.62599 * 188.78918 * 21 20 19 23 23 O 1.42109 * 108.67328 * 57.60187 * 21 20 19 24 24 C 1.81556 * 101.56887 * 303.18793 * 21 20 19 25 25 C 1.52930 * 117.32022 * 214.91093 * 18 15 13 26 26 C 1.47067 * 87.88161 * 332.88146 * 12 11 9 27 27 H 0.96993 * 119.99812 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00323 * 313.06868 * 10 9 7 29 29 H 1.08999 * 113.46711 * 24.87333 * 11 9 7 30 30 H 1.08996 * 113.52107 * 254.44675 * 11 9 7 31 31 H 1.08996 * 117.49745 * 0.02562 * 17 15 13 32 32 H 1.09002 * 117.49185 * 144.98889 * 17 15 13 33 33 H 1.08997 * 109.43428 * 269.74570 * 19 18 15 34 34 H 1.08995 * 109.43254 * 29.61386 * 19 18 15 35 35 H 1.08997 * 109.51921 * 300.85708 * 20 19 18 36 36 H 1.08993 * 109.51748 * 180.68770 * 20 19 18 37 37 H 1.09004 * 109.51370 * 296.89244 * 24 21 20 38 38 H 1.08996 * 109.51504 * 176.73142 * 24 21 20 39 39 H 1.09005 * 109.43483 * 330.39395 * 25 18 15 40 40 H 1.08998 * 109.43711 * 90.29831 * 25 18 15 41 41 H 1.09001 * 113.46818 * 141.90482 * 26 12 11 42 42 H 1.09002 * 113.46605 * 272.33857 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.1927 -2.5403 -0.9587 11 6 2.1488 -3.7442 0.0005 12 7 1.2099 -4.3575 0.9521 13 6 0.8320 -5.6112 1.2711 14 8 1.3221 -6.5579 0.6929 15 6 -0.1997 -5.8366 2.3462 16 1 -0.1940 -5.1140 3.1622 17 6 -0.5605 -7.2838 2.6866 18 6 -1.5540 -6.4082 1.9175 19 6 -1.7510 -6.7067 0.4305 20 6 -2.7204 -7.8790 0.2640 21 16 -4.3239 -7.4359 0.9914 22 8 -5.1470 -8.5939 1.0153 23 8 -4.8011 -6.2572 0.3569 24 6 -3.8499 -7.0259 2.6953 25 6 -2.7920 -5.9205 2.6713 26 6 0.8603 -3.0003 1.3978 27 1 -0.4849 0.8400 -0.0004 28 1 -0.3710 -1.7546 -0.9565 29 1 3.1384 -3.5658 0.4211 30 1 2.1858 -4.2538 -0.9623 31 1 -0.0513 -8.0729 2.1333 32 1 -0.7919 -7.5134 3.7268 33 1 -2.1586 -5.8257 -0.0653 34 1 -0.7913 -6.9631 -0.0181 35 1 -2.3207 -8.7570 0.7714 36 1 -2.8493 -8.0972 -0.7960 37 1 -3.4408 -7.9110 3.1824 38 1 -4.7260 -6.6797 3.2437 39 1 -2.5155 -5.6609 3.6932 40 1 -3.1983 -5.0414 2.1712 41 1 -0.1991 -2.8767 1.6227 42 1 1.5068 -2.6237 2.1905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362507758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:59 Heat of formation + Delta-G solvation = -91.572584 kcal Electronic energy + Delta-G solvation = -27099.342893 eV Core-core repulsion = 23174.003910 eV Total energy + Delta-G solvation = -3925.338984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -40.31020 -38.86673 -37.20395 -36.81266 -36.12964 -34.05883 -32.80393 -32.23088 -32.18441 -28.97017 -25.89765 -25.43390 -25.17410 -24.03809 -23.10988 -20.19306 -19.71081 -18.63971 -18.15909 -17.52727 -16.91891 -16.59200 -16.52024 -15.84821 -15.56256 -15.24654 -15.12426 -14.49574 -14.20839 -14.14534 -13.97902 -13.43635 -13.24254 -13.13117 -12.76356 -12.55800 -12.29687 -12.21273 -12.13589 -12.07350 -12.04768 -11.85340 -11.59595 -11.41860 -11.08424 -11.07249 -10.94408 -10.53987 -10.34779 -10.30003 -10.23518 -10.05476 -9.67130 -9.25910 -8.82059 -8.45509 -7.92589 -6.44337 -4.55167 -0.11018 2.52524 2.72134 3.13011 3.19662 3.20959 3.37047 3.50056 3.61489 3.96042 4.14075 4.26867 4.32352 4.45777 4.47341 4.65738 4.69559 4.79271 4.94859 5.02662 5.06029 5.28629 5.38858 5.48279 5.50927 5.60625 5.65111 5.73869 5.85927 5.90907 5.97955 6.12023 6.16656 6.33870 6.44007 6.55591 6.63291 7.05730 7.58718 7.75561 8.40750 8.48427 8.65993 9.16491 9.45018 10.62321 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003366 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.580614 B = 8317.135312 C = 9038.403220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.106 3.894 12 N -0.628 5.628 13 C 0.563 3.437 14 O -0.564 6.564 15 C -0.155 4.155 16 H 0.124 0.876 17 C -0.140 4.140 18 C -0.127 4.127 19 C -0.084 4.084 20 C -0.592 4.592 21 S 2.415 3.585 22 O -0.950 6.950 23 O -0.933 6.933 24 C -0.599 4.599 25 C -0.071 4.071 26 C 0.070 3.930 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -10.879 7.725 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.200 3.800 10 O -0.384 6.384 11 C -0.016 4.016 12 N -0.359 5.359 13 C 0.352 3.648 14 O -0.445 6.445 15 C -0.176 4.176 16 H 0.142 0.858 17 C -0.177 4.177 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.722 4.722 21 S 2.597 3.403 22 O -0.948 6.948 23 O -0.930 6.930 24 C -0.728 4.728 25 C -0.109 4.109 26 C -0.053 4.053 27 H 0.086 0.914 28 H 0.251 0.749 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.826 -12.003 6.943 15.040 hybrid contribution 0.976 1.419 0.798 1.898 sum -4.849 -10.585 7.741 13.981 Atomic orbital electron populations 1.69248 1.06186 1.28414 1.49895 1.25068 0.95016 0.99905 0.92945 0.86371 0.79496 0.81564 0.79002 1.19810 1.20945 1.19894 1.21390 0.93883 0.89781 1.52396 0.91011 1.19500 0.85402 0.90957 0.84189 1.86042 1.45168 1.48459 1.58710 1.23360 0.93821 0.92263 0.92140 1.49637 1.41887 1.04698 1.39701 1.18905 0.82130 0.81116 0.82634 1.90624 1.58159 1.40841 1.54857 1.22292 0.95323 0.99212 1.00745 0.85818 1.23203 1.00477 0.93037 1.00972 1.21703 0.90534 1.04791 0.95762 1.20965 1.01551 0.96223 0.93444 1.30087 1.20002 1.08433 1.13642 1.08093 0.77833 0.75545 0.78821 1.93576 1.64376 1.50340 1.86458 1.93612 1.77975 1.48217 1.73211 1.30121 1.09124 1.09036 1.24548 1.20848 0.91177 0.96449 1.02471 1.24253 1.00571 0.77658 1.02777 0.91433 0.74865 0.89667 0.91521 0.86989 0.87695 0.88801 0.87770 0.84926 0.84642 0.84874 0.84690 0.89135 0.88650 0.91553 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.09 11.01 55.43 0.61 -21.48 16 2 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 3 Si 0.91 18.88 29.54 -169.99 -5.02 13.85 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -12.97 8.69 -34.44 -0.30 -13.26 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.56 1.58 -91.26 -0.14 5.41 16 10 O -0.57 -14.26 13.54 -35.23 -0.48 -14.74 16 11 C 0.11 2.22 8.03 -8.51 -0.07 2.15 16 12 N -0.63 -12.44 3.69 -185.22 -0.68 -13.12 16 13 C 0.56 10.41 6.82 -10.99 -0.07 10.33 16 14 O -0.56 -11.73 15.73 5.56 0.09 -11.64 16 15 C -0.15 -2.13 5.70 -91.72 -0.52 -2.65 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.14 -1.49 9.48 -26.66 -0.25 -1.74 16 18 C -0.13 -1.46 1.78 -154.44 -0.27 -1.74 16 19 C -0.08 -1.08 5.01 -26.75 -0.13 -1.21 16 20 C -0.59 -5.71 6.35 37.17 0.24 -5.47 16 21 S 2.41 25.05 5.27 -107.50 -0.57 24.48 16 22 O -0.95 -12.48 18.10 -57.82 -1.05 -13.52 16 23 O -0.93 -13.40 17.91 -57.82 -1.04 -14.44 16 24 C -0.60 -4.47 6.35 37.17 0.24 -4.23 16 25 C -0.07 -0.66 5.41 -26.76 -0.14 -0.80 16 26 C 0.07 1.42 7.84 -8.51 -0.07 1.36 16 27 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.39 10.03 6.32 45.56 0.29 10.32 16 29 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.11 1.30 7.67 -51.93 -0.40 0.90 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 34 H 0.10 1.59 6.05 -51.93 -0.31 1.28 16 35 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -32.32 356.33 -9.82 -42.14 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.45 Total: 13.28 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.61 Total: -10.18 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.07 Total: -34.60 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.47 Total: -54.35 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 25.05 SS G_CDS: -0.57 Total: 24.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.32 -9.82 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362507758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.434 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds