Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99758 * 2 1 4 4 H 1.48501 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47271 * 299.99860 * 3 2 1 6 6 H 1.48503 * 109.46942 * 60.00091 * 3 2 1 7 7 C 1.37876 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00125 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.41425 * 46.79651 * 9 7 2 11 11 C 1.53496 * 114.21091 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98360 * 139.65263 * 11 9 7 13 13 C 1.34780 * 136.05524 * 152.84980 * 12 11 9 14 14 O 1.21287 * 119.99739 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00203 * 180.27332 * 13 12 11 16 16 H 1.09000 * 115.54742 * 61.09251 * 15 13 12 17 17 C 1.52979 * 117.49798 * 206.75819 * 15 13 12 18 18 C 1.53115 * 117.49730 * 275.43606 * 15 13 12 19 19 C 1.52926 * 117.32884 * 145.08411 * 18 15 13 20 20 C 1.53018 * 109.69564 * 149.67537 * 19 18 15 21 21 S 1.81553 * 109.20253 * 60.78489 * 20 19 18 22 22 O 1.42101 * 108.63347 * 188.78408 * 21 20 19 23 23 O 1.42106 * 108.67892 * 57.58835 * 21 20 19 24 24 C 1.81560 * 101.55693 * 303.17901 * 21 20 19 25 25 C 1.52932 * 117.32481 * 359.92011 * 18 15 13 26 26 C 1.47067 * 87.88753 * 333.10025 * 12 11 9 27 27 H 0.97004 * 120.00021 * 359.97438 * 1 2 3 28 28 H 0.96705 * 113.99852 * 313.20516 * 10 9 7 29 29 H 1.09003 * 113.46168 * 24.87322 * 11 9 7 30 30 H 1.08992 * 113.47053 * 254.43538 * 11 9 7 31 31 H 1.08995 * 117.49910 * 214.99024 * 17 15 13 32 32 H 1.09001 * 117.49435 * 359.97438 * 17 15 13 33 33 H 1.09000 * 109.43010 * 269.74221 * 19 18 15 34 34 H 1.08991 * 109.42918 * 29.60531 * 19 18 15 35 35 H 1.09004 * 109.51944 * 300.86659 * 20 19 18 36 36 H 1.09003 * 109.51168 * 180.70132 * 20 19 18 37 37 H 1.08999 * 109.51898 * 296.89993 * 24 21 20 38 38 H 1.09007 * 109.51647 * 176.73392 * 24 21 20 39 39 H 1.09000 * 109.43518 * 330.39888 * 25 18 15 40 40 H 1.09007 * 109.43063 * 90.26287 * 25 18 15 41 41 H 1.09007 * 113.46254 * 141.67967 * 26 12 11 42 42 H 1.08998 * 113.46803 * 272.11617 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.1902 -2.5423 -0.9558 11 6 2.1489 -3.7442 0.0005 12 7 1.2101 -4.3573 0.9521 13 6 0.8348 -5.6113 1.2736 14 8 1.3285 -6.5582 0.6986 15 6 -0.2030 -5.8364 2.3429 16 1 -1.1837 -5.4039 2.1446 17 6 -0.1567 -7.1626 3.1041 18 6 0.2752 -5.8668 3.7971 19 6 -0.6635 -5.2892 4.8571 20 6 -0.4534 -6.0196 6.1852 21 16 1.2624 -5.7852 6.7306 22 8 1.5026 -6.6286 7.8487 23 8 1.5176 -4.3918 6.8439 24 6 2.1877 -6.4304 5.3080 25 6 1.7706 -5.6678 4.0486 26 6 0.8563 -2.9999 1.3939 27 1 -0.4850 0.8401 0.0004 28 1 -0.3735 -1.7566 -0.9536 29 1 3.1386 -3.5656 0.4211 30 1 2.1852 -4.2532 -0.9625 31 1 -1.1068 -7.6024 3.4069 32 1 0.6242 -7.8724 2.8313 33 1 -0.4520 -4.2281 4.9894 34 1 -1.6967 -5.4149 4.5336 35 1 -0.6507 -7.0832 6.0511 36 1 -1.1325 -5.6141 6.9352 37 1 1.9681 -7.4905 5.1813 38 1 3.2561 -6.2967 5.4776 39 1 2.3350 -6.0419 3.1944 40 1 1.9776 -4.6060 4.1824 41 1 -0.2044 -2.8775 1.6131 42 1 1.4981 -2.6213 2.1894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362507761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -91.792548 kcal Electronic energy + Delta-G solvation = -27178.515887 eV Core-core repulsion = 23253.167365 eV Total energy + Delta-G solvation = -3925.348522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.31924 -38.83825 -37.26976 -36.90591 -36.19913 -34.05387 -32.85865 -32.28692 -32.23262 -28.93102 -25.86957 -25.52241 -25.16865 -24.11079 -23.16437 -20.22891 -19.74819 -18.71076 -18.17874 -17.50612 -16.96139 -16.60060 -16.56517 -15.89070 -15.63131 -15.39857 -15.09790 -14.56205 -14.24485 -14.22281 -13.82025 -13.45311 -13.31802 -13.14497 -12.79144 -12.67244 -12.37262 -12.29775 -12.18128 -12.15119 -11.99328 -11.93157 -11.60456 -11.48960 -11.10974 -11.06164 -11.01448 -10.50836 -10.37071 -10.30022 -10.29413 -10.14557 -9.64908 -9.25502 -8.82249 -8.45733 -7.92547 -6.44592 -4.54738 -0.18273 2.45291 2.84755 3.11865 3.21484 3.24658 3.30114 3.43074 3.50565 3.88832 4.15106 4.19626 4.25365 4.36755 4.39591 4.58328 4.65387 4.79032 4.88620 4.95757 5.04418 5.27837 5.28355 5.46142 5.53916 5.57593 5.58617 5.63911 5.80915 5.84736 5.93416 6.00616 6.11940 6.34688 6.46987 6.56108 6.64720 7.05753 7.59120 7.75760 8.41161 8.49497 8.66530 9.17101 9.43609 10.62238 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.003741 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.845836 B = 7483.179533 C = 8542.503281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.073 0.927 9 C 0.239 3.761 10 O -0.572 6.572 11 C 0.106 3.894 12 N -0.627 5.627 13 C 0.562 3.438 14 O -0.563 6.563 15 C -0.148 4.148 16 H 0.130 0.870 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.071 4.071 20 C -0.599 4.599 21 S 2.416 3.584 22 O -0.949 6.949 23 O -0.933 6.933 24 C -0.596 4.596 25 C -0.076 4.076 26 C 0.074 3.926 27 H 0.274 0.726 28 H 0.394 0.606 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -9.899 11.032 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.197 3.803 10 O -0.385 6.385 11 C -0.016 4.016 12 N -0.359 5.359 13 C 0.351 3.649 14 O -0.443 6.443 15 C -0.169 4.169 16 H 0.148 0.852 17 C -0.176 4.176 18 C -0.139 4.139 19 C -0.109 4.109 20 C -0.728 4.728 21 S 2.598 3.402 22 O -0.946 6.946 23 O -0.930 6.930 24 C -0.725 4.725 25 C -0.115 4.115 26 C -0.049 4.049 27 H 0.084 0.916 28 H 0.251 0.749 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.581 -10.690 11.453 15.746 hybrid contribution -0.297 1.023 -0.504 1.179 sum -1.878 -9.666 10.950 14.726 Atomic orbital electron populations 1.69261 1.06225 1.28157 1.50230 1.25065 0.95011 0.99951 0.92924 0.86269 0.80110 0.82194 0.77908 1.19389 1.20628 1.20585 1.21459 0.93969 0.89705 1.52031 0.90863 1.19504 0.85402 0.91056 0.84317 1.86046 1.44986 1.48328 1.59189 1.23363 0.93855 0.92252 0.92174 1.49659 1.41832 1.04706 1.39685 1.18922 0.82150 0.81149 0.82660 1.90653 1.57886 1.40960 1.54816 1.22280 1.00600 1.03267 0.90731 0.85192 1.23179 1.03750 0.90199 1.00488 1.21786 0.95307 1.03262 0.93549 1.20836 1.00616 1.00122 0.89302 1.30123 1.24459 1.10562 1.07668 1.08059 0.79172 0.75932 0.77016 1.93583 1.84201 1.69495 1.47333 1.93611 1.83513 1.30086 1.85803 1.30116 1.14516 1.11858 1.16012 1.20866 0.92712 1.01425 0.96453 1.24182 1.00543 0.77567 1.02626 0.91601 0.74934 0.89609 0.91552 0.87584 0.87323 0.88664 0.89013 0.84823 0.84633 0.84851 0.84617 0.89040 0.88708 0.91703 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.06 11.01 55.43 0.61 -21.45 16 2 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 3 Si 0.91 19.00 29.54 -169.99 -5.02 13.98 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.53 -12.91 8.69 -34.44 -0.30 -13.21 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.49 1.57 -91.39 -0.14 5.35 16 10 O -0.57 -14.29 13.53 -35.23 -0.48 -14.76 16 11 C 0.11 2.20 8.03 -8.50 -0.07 2.13 16 12 N -0.63 -12.30 3.69 -185.37 -0.68 -12.98 16 13 C 0.56 10.42 6.11 -10.98 -0.07 10.35 16 14 O -0.56 -12.07 17.37 5.55 0.10 -11.97 16 15 C -0.15 -2.02 5.68 -91.72 -0.52 -2.54 16 16 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 17 C -0.14 -1.45 9.48 -26.66 -0.25 -1.71 16 18 C -0.14 -1.47 1.78 -154.44 -0.27 -1.75 16 19 C -0.07 -0.60 5.41 -26.76 -0.14 -0.75 16 20 C -0.60 -4.09 6.35 37.17 0.24 -3.86 16 21 S 2.42 23.01 5.27 -107.50 -0.57 22.45 16 22 O -0.95 -11.85 18.10 -57.82 -1.05 -12.89 16 23 O -0.93 -12.46 17.91 -57.82 -1.04 -13.49 16 24 C -0.60 -5.04 6.35 37.17 0.24 -4.80 16 25 C -0.08 -0.86 5.00 -26.75 -0.13 -0.99 16 26 C 0.07 1.48 7.82 -8.64 -0.07 1.42 16 27 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 28 H 0.39 9.95 6.33 45.56 0.29 10.24 16 29 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.23 7.92 -51.93 -0.41 0.82 16 33 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.14 1.00 8.14 -51.92 -0.42 0.57 16 39 H 0.09 1.19 6.95 -51.93 -0.36 0.83 16 40 H 0.09 1.11 8.10 -51.92 -0.42 0.69 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.70 358.39 -9.83 -42.53 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.51 Total: 11.88 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.60 Total: -8.69 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.07 Total: -34.43 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -2.46 Total: -53.12 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.57 Total: 22.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.70 -9.83 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362507761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.258 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds