Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00460 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00483 * 3 2 1 5 5 H 1.48496 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46994 * 120.00141 * 3 2 1 7 7 C 1.37882 * 119.99278 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99819 * 172.22236 * 7 2 1 9 9 C 1.50700 * 120.00384 * 352.21909 * 7 2 1 10 10 C 1.52998 * 115.54845 * 84.78355 * 9 7 2 11 11 S 1.81400 * 109.47038 * 65.20110 * 10 9 7 12 12 O 1.42105 * 110.54492 * 62.37653 * 11 10 9 13 13 O 1.42105 * 110.54531 * 285.62630 * 11 10 9 14 14 N 1.65597 * 104.45108 * 174.00057 * 11 10 9 15 15 C 1.46820 * 120.13498 * 89.99878 * 14 11 10 16 16 C 1.53709 * 109.05505 * 236.31752 * 15 14 11 17 17 N 1.47045 * 107.36469 * 313.81269 * 16 15 14 18 18 C 1.33405 * 128.05125 * 234.47088 * 17 16 15 19 19 O 1.21592 * 123.14207 * 350.60138 * 18 17 16 20 20 N 1.34143 * 113.70797 * 170.59824 * 18 17 16 21 21 C 1.47172 * 109.19003 * 3.06697 * 20 18 17 22 22 C 1.47822 * 122.78721 * 51.97781 * 17 16 15 23 23 H 1.09000 * 111.59768 * 69.89274 * 22 17 16 24 24 C 1.47104 * 120.13493 * 269.97976 * 14 11 10 25 25 C 1.52997 * 117.49992 * 230.45257 * 9 7 2 26 26 C 1.52994 * 117.49888 * 299.11305 * 9 7 2 27 27 H 0.97004 * 119.99977 * 5.01659 * 1 2 3 28 28 H 1.09001 * 109.47575 * 305.20459 * 10 9 7 29 29 H 1.09000 * 109.47196 * 185.20041 * 10 9 7 30 30 H 1.09006 * 109.54496 * 116.44059 * 15 14 11 31 31 H 1.09001 * 109.54105 * 356.18811 * 15 14 11 32 32 H 1.09000 * 109.88127 * 194.35002 * 16 15 14 33 33 H 1.08998 * 109.94066 * 73.30930 * 16 15 14 34 34 H 0.96996 * 125.39942 * 183.04725 * 20 18 17 35 35 H 1.08996 * 110.54854 * 243.53387 * 21 20 18 36 36 H 1.09003 * 110.54446 * 120.72761 * 21 20 18 37 37 H 1.09006 * 109.73611 * 3.01067 * 24 14 11 38 38 H 1.09000 * 109.73796 * 242.30593 * 24 14 11 39 39 H 1.08996 * 117.50068 * 215.00210 * 25 9 7 40 40 H 1.09000 * 117.49572 * 0.02899 * 25 9 7 41 41 H 1.08999 * 117.49943 * 359.97438 * 26 9 7 42 42 H 1.09004 * 117.49568 * 144.99323 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0770 -1.1985 -0.1271 9 6 1.2612 -2.4933 0.1756 10 6 0.6665 -3.0915 -1.1008 11 16 2.0064 -3.5627 -2.2291 12 8 2.8234 -4.5661 -1.6416 13 8 2.5802 -2.4103 -2.8308 14 7 1.2423 -4.3375 -3.4774 15 6 0.7774 -3.5760 -4.6433 16 6 -0.7293 -3.8157 -4.8310 17 7 -0.9623 -5.2622 -4.7069 18 6 -1.5699 -6.0745 -5.5733 19 8 -2.1744 -5.6733 -6.5490 20 7 -1.4516 -7.3752 -5.2673 21 6 -0.7271 -7.5085 -3.9932 22 6 -0.4776 -6.0554 -3.5575 23 1 -1.0215 -5.8126 -2.6446 24 6 1.0271 -5.7917 -3.4227 25 6 1.7804 -3.4660 1.2363 26 6 0.4827 -2.6909 1.4777 27 1 -0.4850 0.8369 -0.0735 28 1 0.0270 -2.3531 -1.5846 29 1 0.0770 -3.9730 -0.8486 30 1 1.3129 -3.9078 -5.5329 31 1 0.9601 -2.5136 -4.4814 32 1 -1.0388 -3.4738 -5.8186 33 1 -1.2890 -3.2829 -4.0623 34 1 -1.7901 -8.1110 -5.8010 35 1 0.2179 -8.0305 -4.1433 36 1 -1.3401 -8.0288 -3.2572 37 1 1.3853 -6.1813 -2.4698 38 1 1.5603 -6.2738 -4.2421 39 1 1.6982 -4.5321 1.0248 40 1 2.6592 -3.1661 1.8071 41 1 0.5084 -1.8814 2.2072 42 1 -0.4533 -3.2471 1.4250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363819778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = -41.877693 kcal Electronic energy + Delta-G solvation = -27761.453874 eV Core-core repulsion = 23870.562574 eV Total energy + Delta-G solvation = -3890.891300 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.38366 -37.56908 -36.83774 -36.48090 -35.93534 -35.20041 -33.30733 -32.09627 -31.38185 -28.26833 -28.20528 -25.56434 -25.38298 -23.48643 -21.92132 -21.28274 -20.50689 -19.45454 -18.34157 -17.76665 -17.31979 -16.66033 -16.55016 -15.81943 -15.76510 -15.26699 -14.83445 -14.73922 -14.45574 -14.36336 -14.05989 -13.85356 -13.56106 -13.39111 -13.19390 -12.44125 -12.18590 -12.07291 -11.90899 -11.86332 -11.65969 -11.38606 -11.13154 -11.08879 -10.94735 -10.91547 -10.66544 -10.53212 -10.28970 -10.20250 -9.86954 -9.56273 -9.33072 -9.02697 -8.61587 -8.49520 -8.14363 -6.19043 -4.30091 0.87830 2.39125 3.02707 3.14135 3.29503 3.32133 3.38253 3.69105 4.11303 4.33272 4.34576 4.49581 4.52831 4.77145 4.89654 4.95908 5.07155 5.09030 5.11187 5.16612 5.17931 5.33223 5.49716 5.58543 5.67917 5.73459 5.83743 5.92015 6.01992 6.18435 6.29594 6.53491 6.55860 6.62580 6.65445 6.90173 6.92362 7.17509 7.32847 7.37481 7.75281 8.14115 8.47435 8.75311 9.41618 10.88450 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.004161 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.927322 B = 6728.278038 C = 7110.435474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.084 3.916 3 Si 0.890 3.110 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.550 4.550 11 S 2.601 3.399 12 O -0.968 6.968 13 O -0.943 6.943 14 N -1.009 6.009 15 C 0.104 3.896 16 C 0.133 3.867 17 N -0.623 5.623 18 C 0.704 3.296 19 O -0.591 6.591 20 N -0.745 5.745 21 C 0.098 3.902 22 C 0.096 3.904 23 H 0.104 0.896 24 C 0.115 3.885 25 C -0.208 4.208 26 C -0.140 4.140 27 H 0.264 0.736 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.428 0.572 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -14.058 -6.150 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.684 4.684 11 S 2.700 3.300 12 O -0.959 6.959 13 O -0.934 6.934 14 N -0.843 5.843 15 C -0.023 4.023 16 C 0.010 3.990 17 N -0.362 5.362 18 C 0.404 3.596 19 O -0.470 6.470 20 N -0.408 5.408 21 C -0.028 4.028 22 C -0.010 4.010 23 H 0.121 0.879 24 C -0.012 4.012 25 C -0.245 4.245 26 C -0.180 4.180 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.269 0.731 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.308 -13.385 -6.599 15.101 hybrid contribution -0.564 0.502 0.048 0.757 sum -2.873 -12.882 -6.551 14.735 Atomic orbital electron populations 1.69960 1.06042 1.27392 1.47546 1.24941 0.94796 0.99213 0.93231 0.86661 0.79946 0.82409 0.79307 1.19424 1.21088 1.19874 1.20475 0.93649 0.88587 1.52808 0.91431 1.18284 0.99038 0.94366 0.84287 1.30021 1.16341 1.08366 1.13623 1.05503 0.76845 0.73569 0.74091 1.93489 1.65132 1.59238 1.78027 1.93544 1.74858 1.50273 1.74676 1.58118 1.77273 1.14837 1.34110 1.21859 0.93507 0.97838 0.89049 1.22012 0.96011 0.76925 1.04028 1.47257 1.59537 1.08165 1.21203 1.15721 0.79625 0.81746 0.82510 1.90955 1.47690 1.77977 1.30358 1.45176 1.62720 1.06886 1.25980 1.22330 0.98086 0.95974 0.86437 1.22740 0.96687 0.89816 0.91737 0.87855 1.21834 0.93322 0.81460 1.04550 1.23196 0.98723 0.95950 1.06629 1.22551 0.92524 1.01034 1.01849 0.92606 0.84807 0.88516 0.90797 0.87077 0.88016 0.90104 0.73055 0.89574 0.89478 0.87511 0.90405 0.90699 0.89526 0.89581 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.24 12.98 55.43 0.72 -22.52 16 2 C 0.08 2.20 5.38 -17.82 -0.10 2.11 16 3 Si 0.89 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.63 8.17 -34.44 -0.28 -13.91 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 C 0.04 0.98 1.32 -155.67 -0.21 0.78 16 10 C -0.55 -10.60 6.03 37.16 0.22 -10.37 16 11 S 2.60 48.42 5.14 -107.50 -0.55 47.87 16 12 O -0.97 -19.32 16.63 -57.54 -0.96 -20.27 16 13 O -0.94 -21.06 16.29 -57.54 -0.94 -22.00 16 14 N -1.01 -13.93 3.16 -113.07 -0.36 -14.29 16 15 C 0.10 1.32 6.48 -3.50 -0.02 1.29 16 16 C 0.13 1.58 7.09 -3.38 -0.02 1.56 16 17 N -0.62 -7.44 2.98 -169.91 -0.51 -7.94 16 18 C 0.70 9.33 8.64 -88.70 -0.77 8.57 16 19 O -0.59 -10.27 17.61 5.28 0.09 -10.18 16 20 N -0.75 -6.72 6.39 -64.90 -0.41 -7.14 16 21 C 0.10 0.64 7.66 -3.29 -0.03 0.62 16 22 C 0.10 0.90 4.14 -66.64 -0.28 0.62 16 23 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 24 C 0.12 1.23 5.77 -3.53 -0.02 1.21 16 25 C -0.21 -4.29 9.96 -26.70 -0.27 -4.55 16 26 C -0.14 -3.03 9.49 -26.70 -0.25 -3.29 16 27 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 28 H 0.13 2.71 8.14 -51.92 -0.42 2.28 16 29 H 0.10 1.52 8.09 -51.92 -0.42 1.10 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.48 6.98 -51.93 -0.36 1.12 16 32 H 0.10 1.18 7.84 -51.93 -0.41 0.77 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.43 3.00 8.96 -40.82 -0.37 2.64 16 35 H 0.09 0.42 7.55 -51.93 -0.39 0.03 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 1.06 6.98 -51.93 -0.36 0.70 16 38 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -35.11 355.86 -10.65 -45.76 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.07 Total: 4.96 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -2.01 Total: -15.38 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.56 Total: -51.89 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.80 Total: -52.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 48.42 SS G_CDS: -0.55 Total: 47.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.11 -10.65 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363819778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.881 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds