Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00327 * 2 1 4 4 H 1.48499 * 109.47479 * 240.00567 * 3 2 1 5 5 H 1.48503 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47271 * 120.00039 * 3 2 1 7 7 C 1.37880 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99820 * 172.99713 * 7 2 1 9 9 C 1.50701 * 119.99883 * 352.99810 * 7 2 1 10 10 C 1.52996 * 115.55171 * 84.78540 * 9 7 2 11 11 S 1.81401 * 109.46997 * 39.91633 * 10 9 7 12 12 O 1.42097 * 110.54811 * 62.30921 * 11 10 9 13 13 O 1.42102 * 110.54121 * 285.55808 * 11 10 9 14 14 N 1.65597 * 104.44980 * 173.93552 * 11 10 9 15 15 C 1.46819 * 120.13253 * 89.99721 * 14 11 10 16 16 C 1.53712 * 109.05634 * 123.67627 * 15 14 11 17 17 N 1.47046 * 107.36783 * 46.17560 * 16 15 14 18 18 C 1.33440 * 128.09341 * 125.84029 * 17 16 15 19 19 O 1.21590 * 123.16266 * 9.38881 * 18 17 16 20 20 N 1.34138 * 113.68663 * 189.56692 * 18 17 16 21 21 C 1.47169 * 109.19460 * 356.47818 * 20 18 17 22 22 C 1.47816 * 122.78387 * 308.02309 * 17 16 15 23 23 H 1.09003 * 111.59639 * 290.12658 * 22 17 16 24 24 C 1.47884 * 119.33901 * 269.53858 * 14 11 10 25 25 C 1.53000 * 117.51625 * 230.48673 * 9 7 2 26 26 C 1.53003 * 60.00296 * 107.47879 * 25 9 7 27 27 H 0.96999 * 120.00117 * 5.02010 * 1 2 3 28 28 H 1.08994 * 109.47194 * 279.91436 * 10 9 7 29 29 H 1.08998 * 109.46876 * 159.91111 * 10 9 7 30 30 H 1.08995 * 109.54246 * 3.80162 * 15 14 11 31 31 H 1.09003 * 109.54034 * 243.54584 * 15 14 11 32 32 H 1.09000 * 109.87856 * 286.71038 * 16 15 14 33 33 H 1.09001 * 109.93949 * 165.67358 * 16 15 14 34 34 H 0.97007 * 125.39899 * 176.74513 * 20 18 17 35 35 H 1.09001 * 110.54370 * 116.73065 * 21 20 18 36 36 H 1.09003 * 110.54685 * 239.39394 * 21 20 18 37 37 H 1.08999 * 109.22364 * 117.30552 * 24 14 11 38 38 H 1.09001 * 110.66037 * 356.34429 * 24 14 11 39 39 H 1.08998 * 117.50282 * 214.96955 * 25 9 7 40 40 H 1.09009 * 117.50029 * 359.97438 * 25 9 7 41 41 H 1.08996 * 117.50286 * 252.51234 * 26 25 9 42 42 H 1.08996 * 117.51386 * 107.47305 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0784 -1.1975 -0.1146 9 6 1.2593 -2.4944 0.1580 10 6 0.6797 -3.0840 -1.1293 11 16 1.8643 -2.8587 -2.4845 12 8 3.0716 -3.5572 -2.2130 13 8 1.8822 -1.5033 -2.9110 14 7 1.1957 -3.6787 -3.7584 15 6 0.2877 -2.9895 -4.6836 16 6 0.8316 -3.1253 -6.1149 17 7 1.2136 -4.5322 -6.3076 18 6 0.8212 -5.3671 -7.2717 19 8 0.1911 -5.0074 -8.2474 20 7 1.1838 -6.6414 -7.0616 21 6 1.9977 -6.7173 -5.8378 22 6 2.1018 -5.2555 -5.3734 23 1 3.1271 -4.8899 -5.4304 24 6 1.5309 -5.1052 -3.9580 25 6 1.7652 -3.4742 1.2186 26 6 0.4655 -2.7007 1.4496 27 1 -0.4850 0.8368 -0.0735 28 1 -0.2531 -2.5759 -1.3738 29 1 0.4878 -4.1475 -0.9876 30 1 0.2258 -1.9348 -4.4157 31 1 -0.7030 -3.4404 -4.6258 32 1 1.7034 -2.4837 -6.2425 33 1 0.0600 -2.8491 -6.8335 34 1 0.9501 -7.3929 -7.6287 35 1 1.4976 -7.3239 -5.0828 36 1 2.9853 -7.1219 -6.0597 37 1 0.6251 -5.7037 -3.8609 38 1 2.2696 -5.4327 -3.2263 39 1 1.6851 -4.5389 0.9993 40 1 2.6375 -3.1787 1.8017 41 1 0.4825 -1.8962 2.1848 42 1 -0.4699 -3.2562 1.3821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363819788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = -41.337220 kcal Electronic energy + Delta-G solvation = -27665.836026 eV Core-core repulsion = 23774.968163 eV Total energy + Delta-G solvation = -3890.867864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 12.06 seconds Orbital eigenvalues (eV) -41.33725 -37.48854 -36.77669 -36.33939 -35.88080 -34.99896 -33.26539 -32.09256 -31.33828 -28.33720 -28.07942 -25.59842 -25.29901 -23.44373 -21.87698 -21.25426 -20.40132 -19.52146 -18.20754 -17.73536 -17.24563 -16.63228 -16.43248 -15.76201 -15.66865 -15.17748 -14.81872 -14.69528 -14.41960 -14.27447 -14.08330 -13.79363 -13.43958 -13.36122 -13.11706 -12.38526 -12.26865 -12.08791 -11.89569 -11.80544 -11.63420 -11.20694 -11.07279 -10.93943 -10.90053 -10.80742 -10.57213 -10.41384 -10.26427 -10.16803 -9.79493 -9.55331 -9.30304 -8.98497 -8.58126 -8.46815 -8.13799 -6.19920 -4.35237 1.01457 2.42745 3.04391 3.26781 3.32943 3.34584 3.41772 3.71397 4.16570 4.36534 4.43703 4.56641 4.65967 4.84977 4.95589 5.01943 5.10041 5.12127 5.13731 5.22578 5.27078 5.34806 5.54045 5.63970 5.72465 5.76861 5.86146 5.95315 6.08331 6.25308 6.30516 6.56269 6.59996 6.63987 6.71077 6.91406 6.91679 7.13151 7.34657 7.39756 7.74372 8.13700 8.48894 8.73432 9.42351 10.87562 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.004042 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.310364 B = 6926.292957 C = 7561.327389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.099 3.901 3 Si 0.890 3.110 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.050 3.950 10 C -0.557 4.557 11 S 2.618 3.382 12 O -0.971 6.971 13 O -0.936 6.936 14 N -1.014 6.014 15 C 0.104 3.896 16 C 0.139 3.861 17 N -0.624 5.624 18 C 0.704 3.296 19 O -0.592 6.592 20 N -0.745 5.745 21 C 0.098 3.902 22 C 0.103 3.897 23 H 0.103 0.897 24 C 0.111 3.889 25 C -0.204 4.204 26 C -0.144 4.144 27 H 0.266 0.734 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.428 0.572 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -13.073 -8.296 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.109 4.109 3 Si 0.716 3.284 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.048 3.952 10 C -0.690 4.690 11 S 2.717 3.283 12 O -0.961 6.961 13 O -0.926 6.926 14 N -0.850 5.850 15 C -0.023 4.023 16 C 0.016 3.984 17 N -0.362 5.362 18 C 0.404 3.596 19 O -0.471 6.471 20 N -0.408 5.408 21 C -0.028 4.028 22 C -0.003 4.003 23 H 0.121 0.879 24 C -0.016 4.016 25 C -0.241 4.241 26 C -0.183 4.183 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.269 0.731 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.820 -12.096 -8.802 14.982 hybrid contribution -0.376 0.163 0.157 0.439 sum 0.444 -11.932 -8.645 14.742 Atomic orbital electron populations 1.69936 1.06206 1.27663 1.46253 1.24889 0.94711 0.99278 0.92019 0.86658 0.80113 0.82332 0.79250 1.19133 1.20954 1.19920 1.20544 0.93608 0.88762 1.55287 0.91352 1.18184 0.98780 0.94024 0.84253 1.29997 1.16477 1.06231 1.16273 1.04922 0.75678 0.73572 0.74152 1.93459 1.42411 1.75004 1.85256 1.93529 1.86199 1.33251 1.79630 1.58353 1.62894 1.19782 1.43944 1.21845 0.92652 0.99270 0.88516 1.21908 1.01259 0.78234 0.97019 1.47282 1.50390 1.11682 1.26877 1.15721 0.79527 0.81563 0.82775 1.90950 1.46639 1.78923 1.30555 1.45182 1.58031 1.08412 1.29144 1.22338 0.96856 0.96037 0.87599 1.22571 0.95996 0.90726 0.91024 0.87944 1.22016 1.00933 0.82514 0.96144 1.23125 0.98721 0.95520 1.06739 1.22533 0.92405 1.01124 1.02263 0.92429 0.85470 0.88698 0.86859 0.91157 0.90329 0.88124 0.73079 0.89616 0.89496 0.90876 0.87048 0.91282 0.89675 0.89623 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.37 12.96 55.43 0.72 -22.66 16 2 C 0.10 2.64 5.39 -17.82 -0.10 2.55 16 3 Si 0.89 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.47 6.89 -34.44 -0.24 -14.71 16 8 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 9 C 0.05 1.17 1.64 -155.66 -0.26 0.91 16 10 C -0.56 -11.06 6.29 37.16 0.23 -10.83 16 11 S 2.62 51.11 4.60 -107.50 -0.49 50.61 16 12 O -0.97 -20.33 16.51 -57.54 -0.95 -21.28 16 13 O -0.94 -21.67 15.68 -57.54 -0.90 -22.58 16 14 N -1.01 -14.59 3.18 -112.48 -0.36 -14.95 16 15 C 0.10 1.36 6.58 -3.50 -0.02 1.34 16 16 C 0.14 1.75 7.09 -3.37 -0.02 1.72 16 17 N -0.62 -7.85 3.00 -169.90 -0.51 -8.36 16 18 C 0.70 9.56 8.64 -88.68 -0.77 8.79 16 19 O -0.59 -10.38 17.62 5.29 0.09 -10.29 16 20 N -0.75 -6.92 6.39 -64.90 -0.41 -7.34 16 21 C 0.10 0.68 7.66 -3.30 -0.03 0.66 16 22 C 0.10 1.06 4.09 -66.64 -0.27 0.79 16 23 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 24 C 0.11 1.23 5.88 -3.09 -0.02 1.21 16 25 C -0.20 -4.23 9.88 -26.73 -0.26 -4.50 16 26 C -0.14 -3.18 9.50 -26.73 -0.25 -3.44 16 27 H 0.27 6.88 8.32 -40.82 -0.34 6.54 16 28 H 0.13 2.58 8.14 -51.93 -0.42 2.16 16 29 H 0.09 1.54 7.95 -51.93 -0.41 1.13 16 30 H 0.11 1.59 6.84 -51.93 -0.36 1.23 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.20 7.84 -51.93 -0.41 0.80 16 34 H 0.43 3.07 8.96 -40.82 -0.37 2.70 16 35 H 0.09 0.44 7.55 -51.93 -0.39 0.05 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 38 H 0.11 1.19 6.86 -51.93 -0.36 0.83 16 39 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 40 H 0.08 1.76 8.14 -51.92 -0.42 1.33 16 41 H 0.09 2.01 8.14 -51.93 -0.42 1.58 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -35.10 353.52 -10.56 -45.66 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.04 Total: 5.10 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.00 Total: -15.51 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.56 Total: -53.30 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -1.76 Total: -54.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 51.11 SS G_CDS: -0.49 Total: 50.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.10 -10.56 -45.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363819788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.318 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.06 seconds