Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47159 * 239.99712 * 3 2 1 5 5 H 1.48493 * 109.47492 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47318 * 120.00265 * 3 2 1 7 7 C 1.37880 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00350 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47171 * 184.81626 * 9 7 2 11 11 C 1.46953 * 111.00084 * 64.48759 * 10 9 7 12 12 C 1.53051 * 109.36263 * 176.81102 * 11 10 9 13 13 N 1.46965 * 109.36478 * 58.40072 * 12 11 10 14 14 C 1.46900 * 110.99928 * 176.80885 * 13 12 11 15 15 C 1.50696 * 109.47082 * 169.99802 * 14 13 12 16 16 C 1.34512 * 125.78945 * 89.71410 * 15 14 13 17 17 C 1.41384 * 106.84372 * 179.89239 * 16 15 14 18 18 C 1.34517 * 106.83777 * 0.37311 * 17 16 15 19 19 S 1.76198 * 125.78901 * 179.75184 * 18 17 16 20 20 N 1.65597 * 107.21917 * 90.00075 * 19 18 17 21 21 O 1.42098 * 106.40205 * 203.54393 * 19 18 17 22 22 O 1.42107 * 106.40027 * 336.45878 * 19 18 17 23 23 O 1.34301 * 108.42044 * 359.77383 * 18 17 16 24 24 C 1.46953 * 110.87826 * 300.67592 * 13 12 11 25 25 C 1.46957 * 111.00027 * 300.68410 * 10 9 7 26 26 H 0.97001 * 119.99405 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47641 * 64.81110 * 9 7 2 28 28 H 1.09011 * 109.46695 * 304.81103 * 9 7 2 29 29 H 1.08998 * 109.49117 * 56.84404 * 11 10 9 30 30 H 1.08998 * 109.48733 * 296.77387 * 11 10 9 31 31 H 1.09000 * 109.48963 * 178.36206 * 12 11 10 32 32 H 1.09000 * 109.49110 * 298.43365 * 12 11 10 33 33 H 1.09000 * 109.47532 * 290.00180 * 14 13 12 34 34 H 1.09000 * 109.47223 * 50.00146 * 14 13 12 35 35 H 1.07999 * 126.58017 * 0.03275 * 16 15 14 36 36 H 1.07995 * 126.58089 * 180.12584 * 17 16 15 37 37 H 0.96998 * 120.00052 * 150.00505 * 20 19 18 38 38 H 0.96995 * 119.99917 * 329.99911 * 20 19 18 39 39 H 1.08998 * 109.48781 * 179.28767 * 24 13 12 40 40 H 1.08998 * 109.49073 * 299.35787 * 24 13 12 41 41 H 1.09000 * 109.48521 * 63.22279 * 25 10 9 42 42 H 1.09000 * 109.48942 * 303.16059 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6133 0.1174 11 6 2.8999 -3.5762 1.4097 12 6 3.8195 -4.7943 1.5246 13 7 4.7779 -4.7881 0.4105 14 6 5.7282 -5.9022 0.5274 15 6 6.5312 -6.0129 -0.7430 16 6 7.6944 -5.3862 -0.9955 17 6 8.0953 -5.7743 -2.2945 18 6 7.1488 -6.6085 -2.7615 19 16 7.1486 -7.3843 -4.3434 20 7 7.9361 -8.8318 -4.1797 21 8 5.7936 -7.6956 -4.6374 22 8 7.9612 -6.5783 -5.1857 23 8 6.2040 -6.7492 -1.8175 24 6 4.0791 -4.8253 -0.8818 25 6 3.1596 -3.6072 -0.9966 26 1 -0.4849 0.8401 -0.0004 27 1 0.6908 -2.5954 -0.9295 28 1 0.5608 -2.5202 0.8441 29 1 2.1696 -3.5943 2.2186 30 1 3.4939 -2.6647 1.4758 31 1 4.3606 -4.7536 2.4699 32 1 3.2226 -5.7055 1.4857 33 1 6.3993 -5.7208 1.3669 34 1 5.1813 -6.8303 0.6934 35 1 8.2221 -4.7170 -0.3321 36 1 8.9878 -5.4583 -2.8140 37 1 7.6952 -9.5817 -4.7458 38 1 8.6383 -8.9297 -3.5178 39 1 4.8094 -4.8072 -1.6907 40 1 3.4851 -5.7368 -0.9479 41 1 3.7564 -2.6960 -0.9578 42 1 2.6185 -3.6478 -1.9420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364708199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = -36.944481 kcal Electronic energy + Delta-G solvation = -26370.318044 eV Core-core repulsion = 22479.640664 eV Total energy + Delta-G solvation = -3890.677380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -43.01713 -38.80071 -37.55594 -36.24396 -35.47776 -33.67496 -33.48786 -32.54443 -31.08370 -30.33131 -28.13669 -25.97272 -24.08156 -23.13670 -22.46078 -21.73014 -20.96466 -19.98629 -19.15396 -18.96466 -17.90193 -17.03330 -16.72455 -16.36388 -16.00677 -15.58791 -15.34067 -14.88147 -14.60832 -14.22233 -14.06076 -13.94144 -13.54777 -13.24180 -13.01306 -12.79345 -12.61687 -12.48066 -12.38109 -12.13957 -11.93483 -11.86421 -11.73077 -11.07226 -10.98234 -10.86872 -10.76500 -10.55916 -10.45900 -10.35326 -10.10106 -9.87105 -9.55220 -9.29362 -8.41994 -8.27086 -7.18823 -6.01740 -4.10764 -0.13315 0.77487 2.03762 2.41317 2.87398 3.25461 3.30071 3.34853 3.37696 4.02023 4.22723 4.41924 4.42919 4.52560 4.95996 5.04580 5.10974 5.16075 5.28492 5.32065 5.41804 5.45098 5.51457 5.54060 5.73692 5.84316 5.92054 5.99975 6.08055 6.24280 6.52561 6.57093 6.58052 6.74613 6.79843 7.06225 7.09471 7.30413 7.52963 7.90707 8.04118 8.25710 8.30681 8.99418 9.56117 11.03473 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002874 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.521244 B = 9739.572804 C =10218.058820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.188 3.812 10 N -0.544 5.544 11 C 0.065 3.935 12 C 0.059 3.941 13 N -0.531 5.531 14 C 0.123 3.877 15 C 0.058 3.942 16 C -0.214 4.214 17 C -0.077 4.077 18 C -0.592 4.592 19 S 2.738 3.262 20 N -1.246 6.246 21 O -0.944 6.944 22 O -0.940 6.940 23 O -0.119 6.119 24 C 0.054 3.946 25 C 0.065 3.935 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.424 0.576 38 H 0.418 0.582 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.909 -18.894 -1.986 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.268 5.268 11 C -0.064 4.064 12 C -0.069 4.069 13 N -0.257 5.257 14 C -0.004 4.004 15 C 0.003 3.997 16 C -0.234 4.234 17 C -0.099 4.099 18 C -0.723 4.723 19 S 2.819 3.181 20 N -0.921 5.921 21 O -0.933 6.933 22 O -0.929 6.929 23 O -0.013 6.013 24 C -0.074 4.074 25 C -0.064 4.064 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.255 0.745 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.964 -18.430 -2.776 25.886 hybrid contribution 1.088 0.992 0.802 1.677 sum 19.052 -17.438 -1.974 25.902 Atomic orbital electron populations 1.69939 1.06029 1.26942 1.50114 1.24964 0.94759 0.99156 0.94894 0.86691 0.79659 0.83226 0.78649 1.20243 1.21238 1.20273 1.21735 0.93402 0.92041 1.51740 0.92346 1.19728 0.90779 0.85422 0.97849 1.62700 1.16580 1.46846 1.00717 1.21913 0.95474 0.95627 0.93413 1.22302 0.92740 0.99285 0.92525 1.62454 1.18495 1.40569 1.04176 1.20831 0.94995 0.94906 0.89673 1.23073 0.95214 0.92522 0.88918 1.21831 0.98305 1.05427 0.97851 1.22041 0.98648 0.94096 0.95083 1.35253 0.99175 1.21745 1.16100 1.01017 0.73545 0.72515 0.71054 1.53110 1.54143 1.32065 1.52800 1.93633 1.34240 1.83291 1.82184 1.93682 1.70305 1.69051 1.59907 1.84209 1.40976 1.55374 1.20714 1.22358 0.95974 0.99290 0.89769 1.21920 0.93424 0.95595 0.95433 0.92763 0.95354 0.94776 0.91026 0.93210 0.90813 0.94200 0.87151 0.92488 0.81969 0.81471 0.74518 0.75529 0.91456 0.94089 0.93186 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.55 -15.21 7.67 -34.44 -0.26 -15.48 16 8 H 0.06 1.61 5.81 -52.48 -0.31 1.31 16 9 C 0.19 4.88 5.14 -4.98 -0.03 4.85 16 10 N -0.54 -11.83 4.92 -235.91 -1.16 -12.99 16 11 C 0.06 1.24 5.32 -3.77 -0.02 1.22 16 12 C 0.06 0.87 5.58 -3.76 -0.02 0.85 16 13 N -0.53 -7.90 4.85 -235.91 -1.14 -9.04 16 14 C 0.12 1.38 5.82 -4.98 -0.03 1.35 16 15 C 0.06 0.69 5.02 -35.63 -0.18 0.51 16 16 C -0.21 -2.26 10.81 -39.70 -0.43 -2.69 16 17 C -0.08 -0.76 10.63 -39.70 -0.42 -1.19 16 18 C -0.59 -6.39 7.36 29.42 0.22 -6.18 16 19 S 2.74 25.44 6.43 -107.50 -0.69 24.74 16 20 N -1.25 -5.61 9.52 60.35 0.57 -5.04 16 21 O -0.94 -12.60 18.02 -57.22 -1.03 -13.63 16 22 O -0.94 -11.01 17.83 -57.17 -1.02 -12.03 16 23 O -0.12 -1.52 9.93 5.71 0.06 -1.47 16 24 C 0.05 0.92 5.07 -3.77 -0.02 0.90 16 25 C 0.07 1.33 5.24 -3.77 -0.02 1.31 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.94 8.12 -51.92 -0.42 0.52 16 29 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 30 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.59 8.08 -51.93 -0.42 0.18 16 35 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.42 1.19 8.96 -34.47 -0.31 0.88 16 38 H 0.42 0.87 8.96 -34.47 -0.31 0.56 16 39 H 0.07 1.13 6.22 -51.93 -0.32 0.81 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 1.12 6.45 -51.93 -0.34 0.79 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -36.24 355.73 -10.37 -46.61 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.72 Total: -0.70 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.31 Total: -12.80 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.99 Total: -52.73 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.99 Total: -27.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 25.44 SS G_CDS: -0.69 Total: 24.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.24 -10.37 -46.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364708199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.662 kcal (2) G-P(sol) polarization free energy of solvation -36.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds