Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47159 * 239.99712 * 3 2 1 5 5 H 1.48493 * 109.47492 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47318 * 120.00265 * 3 2 1 7 7 C 1.37880 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00350 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47171 * 184.81626 * 9 7 2 11 11 C 1.46953 * 111.00084 * 64.48759 * 10 9 7 12 12 C 1.53051 * 109.36263 * 176.81102 * 11 10 9 13 13 N 1.46965 * 109.36478 * 58.40072 * 12 11 10 14 14 C 1.46900 * 110.99928 * 176.80885 * 13 12 11 15 15 C 1.50696 * 109.47082 * 169.99802 * 14 13 12 16 16 C 1.34512 * 125.78945 * 89.71410 * 15 14 13 17 17 C 1.41384 * 106.84372 * 179.89239 * 16 15 14 18 18 C 1.34517 * 106.83777 * 0.37311 * 17 16 15 19 19 S 1.76198 * 125.78901 * 179.75184 * 18 17 16 20 20 N 1.65597 * 107.21917 * 90.00075 * 19 18 17 21 21 O 1.42098 * 106.40205 * 203.54393 * 19 18 17 22 22 O 1.42107 * 106.40027 * 336.45878 * 19 18 17 23 23 O 1.34301 * 108.42044 * 359.77383 * 18 17 16 24 24 C 1.46953 * 110.87826 * 300.67592 * 13 12 11 25 25 C 1.46957 * 111.00027 * 300.68410 * 10 9 7 26 26 H 0.97001 * 119.99405 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47641 * 64.81110 * 9 7 2 28 28 H 1.09011 * 109.46695 * 304.81103 * 9 7 2 29 29 H 1.08998 * 109.49117 * 56.84404 * 11 10 9 30 30 H 1.08998 * 109.48733 * 296.77387 * 11 10 9 31 31 H 1.09000 * 109.48963 * 178.36206 * 12 11 10 32 32 H 1.09000 * 109.49110 * 298.43365 * 12 11 10 33 33 H 1.09000 * 109.47532 * 290.00180 * 14 13 12 34 34 H 1.09000 * 109.47223 * 50.00146 * 14 13 12 35 35 H 1.07999 * 126.58017 * 0.03275 * 16 15 14 36 36 H 1.07995 * 126.58089 * 180.12584 * 17 16 15 37 37 H 0.96998 * 120.00052 * 150.00505 * 20 19 18 38 38 H 0.96995 * 119.99917 * 329.99911 * 20 19 18 39 39 H 1.08998 * 109.48781 * 179.28767 * 24 13 12 40 40 H 1.08998 * 109.49073 * 299.35787 * 24 13 12 41 41 H 1.09000 * 109.48521 * 63.22279 * 25 10 9 42 42 H 1.09000 * 109.48942 * 303.16059 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6133 0.1174 11 6 2.8999 -3.5762 1.4097 12 6 3.8195 -4.7943 1.5246 13 7 4.7779 -4.7881 0.4105 14 6 5.7282 -5.9022 0.5274 15 6 6.5312 -6.0129 -0.7430 16 6 7.6944 -5.3862 -0.9955 17 6 8.0953 -5.7743 -2.2945 18 6 7.1488 -6.6085 -2.7615 19 16 7.1486 -7.3843 -4.3434 20 7 7.9361 -8.8318 -4.1797 21 8 5.7936 -7.6956 -4.6374 22 8 7.9612 -6.5783 -5.1857 23 8 6.2040 -6.7492 -1.8175 24 6 4.0791 -4.8253 -0.8818 25 6 3.1596 -3.6072 -0.9966 26 1 -0.4849 0.8401 -0.0004 27 1 0.6908 -2.5954 -0.9295 28 1 0.5608 -2.5202 0.8441 29 1 2.1696 -3.5943 2.2186 30 1 3.4939 -2.6647 1.4758 31 1 4.3606 -4.7536 2.4699 32 1 3.2226 -5.7055 1.4857 33 1 6.3993 -5.7208 1.3669 34 1 5.1813 -6.8303 0.6934 35 1 8.2221 -4.7170 -0.3321 36 1 8.9878 -5.4583 -2.8140 37 1 7.6952 -9.5817 -4.7458 38 1 8.6383 -8.9297 -3.5178 39 1 4.8094 -4.8072 -1.6907 40 1 3.4851 -5.7368 -0.9479 41 1 3.7564 -2.6960 -0.9578 42 1 2.6185 -3.6478 -1.9420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364708199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = -69.393158 kcal Electronic energy + Delta-G solvation = -26371.725124 eV Core-core repulsion = 22479.640664 eV Total energy + Delta-G solvation = -3892.084460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -43.84557 -40.22259 -38.42486 -37.12229 -37.00953 -34.62146 -34.27513 -34.14548 -32.25012 -31.76019 -29.63195 -27.56569 -25.58795 -24.57580 -23.41607 -23.26272 -21.95090 -20.74286 -20.69023 -19.70579 -18.60339 -18.48965 -17.81410 -17.56300 -16.97121 -16.80603 -16.42218 -16.23818 -16.01256 -15.84855 -15.47672 -14.98529 -14.80770 -14.72086 -14.02983 -13.87080 -13.73979 -13.53488 -13.41229 -13.36891 -13.28766 -13.19713 -12.89655 -12.78458 -12.59051 -12.40051 -12.23212 -12.14951 -11.82957 -11.77155 -11.46477 -11.44252 -11.20856 -10.62255 -10.14818 -9.42930 -9.05999 -8.17381 -6.37005 -0.86794 -0.04667 1.24587 1.35778 1.37610 1.45822 1.65346 2.16540 2.36188 2.54752 2.89157 3.07526 3.32597 3.40706 3.66656 3.79535 3.92238 4.16114 4.19774 4.24258 4.35316 4.40937 4.51295 4.54920 4.65211 4.68175 4.70616 4.80673 5.00748 5.04813 5.19588 5.20959 5.22658 5.25419 5.30259 5.69660 5.72880 5.86677 5.91739 6.02656 6.23099 6.29780 6.47434 6.82953 7.34464 8.85338 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002874 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.521244 B = 9739.572804 C =10218.058820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.201 3.799 10 N -0.544 5.544 11 C 0.063 3.937 12 C 0.070 3.930 13 N -0.541 5.541 14 C 0.126 3.874 15 C 0.035 3.965 16 C -0.212 4.212 17 C -0.077 4.077 18 C -0.602 4.602 19 S 2.765 3.235 20 N -1.224 6.224 21 O -0.988 6.988 22 O -0.965 6.965 23 O -0.140 6.140 24 C 0.070 3.930 25 C 0.068 3.932 26 H 0.266 0.734 27 H -0.001 1.001 28 H 0.011 0.989 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.144 0.856 34 H 0.068 0.932 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.435 0.565 38 H 0.432 0.568 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.027 0.973 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.772 -19.627 -0.998 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.268 5.268 11 C -0.066 4.066 12 C -0.057 4.057 13 N -0.267 5.267 14 C -0.001 4.001 15 C -0.019 4.019 16 C -0.232 4.232 17 C -0.098 4.098 18 C -0.732 4.732 19 S 2.846 3.154 20 N -0.906 5.906 21 O -0.978 6.978 22 O -0.955 6.955 23 O -0.035 6.035 24 C -0.058 4.058 25 C -0.061 4.061 26 H 0.075 0.925 27 H 0.017 0.983 28 H 0.029 0.971 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.162 0.838 34 H 0.086 0.914 35 H 0.200 0.800 36 H 0.210 0.790 37 H 0.269 0.731 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.859 -19.194 -1.773 28.402 hybrid contribution 0.242 1.146 0.489 1.270 sum 21.101 -18.048 -1.284 27.796 Atomic orbital electron populations 1.70062 1.07586 1.27997 1.50966 1.25827 0.95621 1.02885 0.94431 0.85605 0.78411 0.78708 0.78956 1.19814 1.20573 1.19201 1.21936 0.93358 0.92902 1.51434 0.92557 1.19379 0.91198 0.86760 0.95232 1.62625 1.17060 1.44537 1.02607 1.21988 0.95786 0.97104 0.91684 1.22215 0.92484 0.96909 0.94138 1.62389 1.18438 1.43091 1.02776 1.20987 0.94594 0.93910 0.90564 1.23310 0.96074 0.93345 0.89160 1.22173 0.97889 1.04911 0.98247 1.22433 0.99158 0.93209 0.94998 1.35399 0.99262 1.22500 1.16063 0.99966 0.72434 0.72767 0.70269 1.52625 1.53821 1.30787 1.53347 1.93577 1.37085 1.84097 1.83037 1.93653 1.70497 1.70379 1.60933 1.84180 1.41880 1.56099 1.21384 1.22071 0.95290 0.96907 0.91570 1.21876 0.93226 0.96578 0.94418 0.92546 0.98301 0.97095 0.91159 0.95542 0.87076 0.93475 0.83833 0.91359 0.80031 0.78996 0.73124 0.73719 0.91274 0.94271 0.95507 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.56 -31.66 7.67 25.60 0.20 -31.46 16 8 H 0.06 3.17 5.81 -2.91 -0.02 3.16 16 9 C 0.20 10.93 5.14 85.56 0.44 11.37 16 10 N -0.54 -24.31 4.92 -900.30 -4.43 -28.74 16 11 C 0.06 2.40 5.32 86.31 0.46 2.86 16 12 C 0.07 1.90 5.58 86.31 0.48 2.38 16 13 N -0.54 -14.92 4.85 -900.28 -4.37 -19.29 16 14 C 0.13 2.41 5.82 85.56 0.50 2.91 16 15 C 0.04 0.76 5.02 24.83 0.12 0.88 16 16 C -0.21 -3.89 10.81 22.19 0.24 -3.65 16 17 C -0.08 -1.34 10.63 22.19 0.24 -1.10 16 18 C -0.60 -12.15 7.36 66.97 0.49 -11.66 16 19 S 2.76 49.05 6.43 -56.49 -0.36 48.69 16 20 N -1.22 -8.77 9.52 37.02 0.35 -8.41 16 21 O -0.99 -26.47 18.02 -127.96 -2.31 -28.77 16 22 O -0.97 -21.71 17.83 -128.00 -2.28 -24.00 16 23 O -0.14 -3.42 9.93 -2.49 -0.02 -3.44 16 24 C 0.07 2.34 5.07 86.31 0.44 2.78 16 25 C 0.07 2.85 5.24 86.31 0.45 3.31 16 26 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.01 0.63 8.12 -2.38 -0.02 0.62 16 29 H 0.07 2.65 8.13 -2.39 -0.02 2.63 16 30 H 0.03 1.13 6.95 -2.39 -0.02 1.11 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 35 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.43 1.63 8.96 -96.75 -0.87 0.76 16 38 H 0.43 0.75 8.96 -96.75 -0.87 -0.12 16 39 H 0.07 2.30 6.22 -2.39 -0.01 2.28 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.03 1.24 6.45 -2.39 -0.02 1.22 16 42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -80.28 355.73 -7.26 -87.54 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -0.67 Total: 5.74 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.52 Total: -20.26 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -8.16 Total: -112.23 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -4.61 Total: -56.21 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.36 Total: 48.69 kcal Total: -80.28 -7.26 -87.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364708199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.143 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds