Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 C 1.52996 * 109.47026 * 179.97438 * 3 2 1 5 5 S 1.81403 * 109.46907 * 180.02562 * 4 3 2 6 6 O 1.42099 * 108.57827 * 65.51279 * 5 4 3 7 7 O 1.42092 * 108.58055 * 294.48761 * 5 4 3 8 8 C 1.81401 * 101.92210 * 179.97438 * 5 4 3 9 9 C 1.50696 * 109.47143 * 180.02562 * 8 5 4 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99736 * 180.02562 * 9 8 5 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 8 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.09000 * 109.47057 * 60.00020 * 1 2 3 27 27 H 1.08997 * 109.47478 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47311 * 300.00420 * 1 2 3 29 29 H 1.08998 * 109.46960 * 239.99960 * 2 1 3 30 30 H 1.09002 * 109.46588 * 120.00194 * 2 1 3 31 31 H 1.09000 * 109.46684 * 59.99911 * 3 2 1 32 32 H 1.09000 * 109.47074 * 299.99969 * 3 2 1 33 33 H 1.08998 * 109.46988 * 60.00080 * 4 3 2 34 34 H 1.09000 * 109.47252 * 299.99963 * 4 3 2 35 35 H 1.09001 * 109.46832 * 59.99944 * 8 5 4 36 36 H 1.09006 * 109.47179 * 300.00473 * 8 5 4 37 37 H 0.97003 * 120.00166 * 0.02562 * 11 9 8 38 38 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 39 39 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 40 40 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 41 41 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1527 0.0014 6 8 3.7987 3.7653 1.2272 7 8 3.7998 3.7660 -1.2243 8 6 5.9730 2.9144 0.0029 9 6 6.6576 4.2568 0.0043 10 8 5.9974 5.2743 0.0048 11 7 8.0036 4.3268 0.0050 12 6 8.6404 5.5754 0.0058 13 6 8.0028 6.8264 0.0064 14 6 8.9612 7.7805 0.0129 15 7 10.1609 7.1623 0.0076 16 6 11.4690 7.8218 0.0090 17 6 12.2838 7.3191 1.1729 18 1 11.8688 6.5818 1.8441 19 6 13.5589 7.8005 1.3809 20 7 14.0662 8.6945 0.5605 21 14 14.5691 7.1769 2.8232 22 1 15.8973 7.8411 2.8213 23 1 13.8629 7.4860 4.0925 24 1 14.7500 5.7080 2.7024 25 7 9.9366 5.7796 0.0070 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 6.2664 2.3574 -0.8869 36 1 6.2649 2.3570 0.8930 37 1 8.5316 3.5131 0.0043 38 1 6.9362 6.9965 0.0068 39 1 8.7959 8.8478 0.0191 40 1 11.3325 8.8995 0.0997 41 1 11.9895 7.5986 -0.9222 42 1 13.5418 9.0181 -0.1886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411965320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -34.580884 kcal Electronic energy + Delta-G solvation = -24976.532256 eV Core-core repulsion = 21085.957369 eV Total energy + Delta-G solvation = -3890.574887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -40.91230 -39.54313 -37.23549 -36.45094 -36.10707 -35.09332 -33.77360 -31.66949 -31.03215 -30.22709 -29.46403 -26.29567 -24.92099 -23.29938 -22.18853 -21.69498 -20.62260 -19.83066 -19.10295 -17.59944 -17.24244 -17.21256 -16.90849 -16.31326 -16.13055 -16.09134 -15.36271 -15.07685 -14.45905 -14.33438 -14.11359 -13.92802 -13.81917 -13.34285 -13.32115 -13.12791 -12.51893 -12.30464 -12.28032 -12.23181 -12.21992 -12.09785 -11.90753 -11.81479 -11.42927 -11.21267 -11.19732 -10.87085 -10.74620 -10.62927 -10.35259 -10.18845 -9.91043 -9.05989 -8.61676 -8.31381 -7.63560 -6.61628 -4.36009 -0.51315 1.94529 2.35417 2.42067 2.73152 3.28921 3.35579 3.36764 3.48211 3.55799 3.64483 3.65763 4.01486 4.11314 4.20750 4.38128 4.42199 4.43970 4.66422 4.66769 4.84705 4.95888 5.12040 5.13033 5.23960 5.34454 5.36205 5.54395 5.60727 5.63015 5.76476 6.02408 6.31015 6.36101 6.52634 6.69758 7.15245 7.30860 7.61627 7.76203 7.86766 8.29513 8.44076 8.57037 9.32244 10.76031 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.002016 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.829227 B =13883.504780 C =14345.925299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.115 4.115 4 C -0.619 4.619 5 S 2.452 3.548 6 O -0.915 6.915 7 O -0.916 6.916 8 C -0.659 4.659 9 C 0.547 3.453 10 O -0.506 6.506 11 N -0.617 5.617 12 C 0.252 3.748 13 C -0.284 4.284 14 C 0.054 3.946 15 N -0.315 5.315 16 C 0.248 3.752 17 C -0.610 4.610 18 H 0.063 0.937 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.297 5.297 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.415 0.585 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.528 -18.822 -2.138 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.748 4.748 5 S 2.628 3.372 6 O -0.912 6.912 7 O -0.913 6.913 8 C -0.786 4.786 9 C 0.331 3.669 10 O -0.380 6.380 11 N -0.264 5.264 12 C -0.001 4.001 13 C -0.315 4.315 14 C -0.096 4.096 15 N -0.096 5.096 16 C 0.130 3.870 17 C -0.648 4.648 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.539 5.539 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.128 5.128 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.251 0.749 38 H 0.181 0.819 39 H 0.188 0.812 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.682 -17.629 -1.398 27.212 hybrid contribution -1.227 -1.129 -0.779 1.840 sum -21.909 -18.758 -2.177 28.924 Atomic orbital electron populations 1.21817 0.95319 1.02035 1.02356 1.21489 0.96269 0.95176 1.02579 1.21397 0.89759 0.99837 1.04337 1.30471 1.07381 1.25092 1.11809 1.07514 0.76203 0.77484 0.75961 1.93602 1.79497 1.72395 1.45721 1.93597 1.79536 1.72393 1.45771 1.30906 1.29003 1.04908 1.13786 1.19004 0.82153 0.88768 0.76988 1.90816 1.63874 1.35389 1.47965 1.42179 1.05670 1.06825 1.71761 1.19058 0.91164 0.85684 1.04170 1.21580 1.01253 0.89190 1.19447 1.22591 0.85242 0.99543 1.02229 1.48826 1.07193 1.01834 1.51786 1.19799 0.75928 0.91904 0.99333 1.22096 1.02042 1.28189 1.12457 0.91837 1.25931 0.95560 0.94531 1.02127 1.70853 1.39958 1.28065 1.15000 0.83412 0.75936 0.75945 0.74296 1.20486 1.21211 1.21171 1.77340 1.12360 0.95609 1.27501 0.92365 0.92391 0.92347 0.91517 0.91503 0.89903 0.89912 0.84724 0.84708 0.81924 0.81882 0.74904 0.81875 0.81209 0.93462 0.94663 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.50 5.93 -26.73 -0.16 -0.66 16 3 C -0.11 -0.63 5.22 -26.73 -0.14 -0.77 16 4 C -0.62 -2.49 5.81 37.16 0.22 -2.27 16 5 S 2.45 21.98 3.96 -107.50 -0.43 21.56 16 6 O -0.92 -12.00 17.94 -59.56 -1.07 -13.07 16 7 O -0.92 -11.88 17.95 -59.50 -1.07 -12.95 16 8 C -0.66 -4.57 6.29 36.00 0.23 -4.34 16 9 C 0.55 7.55 7.82 -10.99 -0.09 7.47 16 10 O -0.51 -9.01 12.75 2.54 0.03 -8.98 16 11 N -0.62 -9.11 5.45 -11.13 -0.06 -9.17 16 12 C 0.25 5.03 8.11 -154.39 -1.25 3.78 16 13 C -0.28 -5.69 9.61 -39.83 -0.38 -6.07 16 14 C 0.05 1.08 11.44 -17.24 -0.20 0.88 16 15 N -0.31 -7.32 3.67 -62.56 -0.23 -7.55 16 16 C 0.25 6.24 5.57 -5.19 -0.03 6.22 16 17 C -0.61 -17.04 9.24 -34.44 -0.32 -17.36 16 18 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 20 N -0.90 -26.14 13.65 55.43 0.76 -25.38 16 21 Si 1.08 24.72 29.90 -169.99 -5.08 19.63 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 25 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 35 H 0.16 0.46 8.14 -51.92 -0.42 0.03 16 36 H 0.16 0.49 8.14 -51.92 -0.42 0.06 16 37 H 0.42 4.58 8.82 -40.82 -0.36 4.22 16 38 H 0.16 3.19 5.92 -52.49 -0.31 2.88 16 39 H 0.17 2.77 8.06 -52.48 -0.42 2.35 16 40 H 0.05 1.15 7.94 -51.93 -0.41 0.73 16 41 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 42 H 0.27 7.56 7.22 -40.82 -0.29 7.26 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -40.11 372.75 -9.06 -49.17 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.07 Total: 0.44 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.85 Total: -12.90 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.86 Total: -48.51 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -2.10 Total: -35.00 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Atomic # 16 Polarization: 21.98 SS G_CDS: -0.43 Total: 21.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.11 -9.06 -49.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411965320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.588 kcal (2) G-P(sol) polarization free energy of solvation -40.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds