Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86805 * 119.99672 * 2 1 4 4 H 1.48493 * 109.46991 * 270.00358 * 3 2 1 5 5 H 1.48498 * 109.46746 * 30.00334 * 3 2 1 6 6 H 1.48496 * 109.46897 * 150.00022 * 3 2 1 7 7 C 1.38795 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00110 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00035 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99495 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00233 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00058 * 180.02562 * 13 11 10 15 15 H 1.09011 * 110.97212 * 322.29418 * 14 13 11 16 16 C 1.54996 * 111.11258 * 86.44823 * 14 13 11 17 17 O 1.43862 * 105.17786 * 81.85055 * 16 14 13 18 18 C 1.42538 * 109.62521 * 24.30982 * 17 16 14 19 19 C 1.53261 * 115.53460 * 128.44750 * 18 17 16 20 20 N 1.48092 * 86.10971 * 140.23669 * 19 18 17 21 21 C 1.46901 * 110.99745 * 222.90969 * 20 19 18 22 22 C 1.50700 * 109.46773 * 169.99800 * 21 20 19 23 23 N 1.34780 * 119.99784 * 180.02562 * 22 21 20 24 24 O 1.21276 * 120.00311 * 359.97438 * 22 21 20 25 25 C 1.48331 * 90.77360 * 335.89111 * 20 19 18 26 26 C 1.53773 * 108.37380 * 358.12875 * 18 17 16 27 27 H 0.96994 * 120.00162 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47080 * 59.99855 * 10 9 7 29 29 H 1.08997 * 109.47476 * 299.99700 * 10 9 7 30 30 H 0.96993 * 119.99941 * 359.97438 * 13 11 10 31 31 H 1.09000 * 110.30560 * 322.92556 * 16 14 13 32 32 H 1.09004 * 110.39058 * 200.81724 * 16 14 13 33 33 H 1.09002 * 113.79142 * 254.56066 * 19 18 17 34 34 H 1.09003 * 113.78943 * 25.91016 * 19 18 17 35 35 H 1.08996 * 109.47023 * 289.99687 * 21 20 19 36 36 H 1.09005 * 109.47171 * 49.99925 * 21 20 19 37 37 H 0.96998 * 120.00020 * 0.02562 * 23 22 21 38 38 H 0.97000 * 120.00124 * 179.97438 * 23 22 21 39 39 H 1.08996 * 113.68663 * 269.83035 * 25 20 19 40 40 H 1.09005 * 113.96237 * 138.41915 * 25 20 19 41 41 H 1.08998 * 110.92196 * 97.22342 * 26 18 17 42 42 H 1.09000 * 110.92250 * 220.86605 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0021 12 8 6.3441 -2.2961 -0.0025 13 7 6.0459 -4.4945 -0.0026 14 6 7.4909 -4.7355 -0.0032 15 1 8.0080 -4.0052 -0.6257 16 6 8.0568 -4.7395 1.4398 17 8 7.7883 -6.0590 1.9461 18 6 7.6626 -6.9725 0.8591 19 6 8.5247 -8.2360 0.9549 20 7 7.3515 -8.9559 0.4085 21 6 7.1336 -10.2230 1.1191 22 6 5.8052 -10.8058 0.7108 23 7 5.3909 -11.9744 1.2393 24 8 5.1084 -10.2229 -0.0927 25 6 6.4422 -7.8981 0.9128 26 6 7.8163 -6.1873 -0.4541 27 1 -0.4850 0.8400 0.0004 28 1 3.6435 -3.4316 -0.8906 29 1 3.6443 -3.4313 0.8893 30 1 5.4293 -5.2433 -0.0019 31 1 7.5487 -3.9907 2.0474 32 1 9.1303 -4.5504 1.4272 33 1 9.3873 -8.2314 0.2886 34 1 8.7777 -8.5192 1.9767 35 1 7.9303 -10.9227 0.8669 36 1 7.1359 -10.0418 2.1940 37 1 5.9477 -12.4401 1.8828 38 1 4.5357 -12.3494 0.9768 39 1 6.0738 -8.0820 1.9220 40 1 5.6514 -7.6242 0.2144 41 1 8.8359 -6.2579 -0.8329 42 1 7.1006 -6.5327 -1.2002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484790889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -73.941431 kcal Electronic energy + Delta-G solvation = -25657.273796 eV Core-core repulsion = 21764.992108 eV Total energy + Delta-G solvation = -3892.281688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 11.27 seconds Orbital eigenvalues (eV) -41.47514 -39.84997 -39.03021 -37.50371 -34.41032 -34.08823 -32.41976 -31.62222 -30.77322 -28.64654 -27.09915 -26.62858 -25.59346 -23.71688 -22.13227 -20.93275 -20.47255 -19.61176 -18.08181 -17.81727 -17.40981 -17.02519 -16.67705 -16.21174 -15.94156 -15.57031 -15.30305 -14.98882 -14.93097 -14.69109 -14.27211 -13.89110 -13.65535 -13.45025 -13.29440 -12.99846 -12.78178 -12.73286 -12.30500 -12.08475 -11.89132 -11.64781 -11.56540 -11.24761 -10.99581 -10.96765 -10.58420 -10.30480 -10.12099 -9.85982 -9.82237 -9.53777 -9.37128 -9.01637 -8.96172 -8.48995 -6.90121 -6.26940 -3.98722 2.23820 2.74649 2.85681 2.92363 3.27623 3.34656 3.38785 3.51613 3.57117 3.65159 4.00269 4.21241 4.28535 4.34665 4.39119 4.58756 4.71591 4.73659 4.74985 4.81308 5.00624 5.11963 5.14337 5.19365 5.26609 5.31828 5.44294 5.52735 5.56798 5.68933 5.74958 5.75894 5.78978 6.04507 6.29236 6.41953 6.50307 6.76085 6.87916 7.57093 7.85908 7.96216 8.44130 8.45069 9.19087 10.82365 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.002530 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.205247 B =11064.036221 C =12326.422527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.725 5.725 14 C 0.114 3.886 15 H 0.110 0.890 16 C 0.039 3.961 17 O -0.362 6.362 18 C 0.077 3.923 19 C 0.000 4.000 20 N -0.454 5.454 21 C 0.001 3.999 22 C 0.516 3.484 23 N -0.859 5.859 24 O -0.520 6.520 25 C 0.011 3.989 26 C -0.129 4.129 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.401 0.599 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.403 0.597 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.036 -25.155 4.074 31.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.393 6.393 13 N -0.379 5.379 14 C 0.008 3.992 15 H 0.128 0.872 16 C -0.039 4.039 17 O -0.279 6.279 18 C 0.036 3.964 19 C -0.129 4.129 20 N -0.178 5.178 21 C -0.131 4.131 22 C 0.299 3.701 23 N -0.425 5.425 24 O -0.394 6.394 25 C -0.118 4.118 26 C -0.167 4.167 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.236 0.764 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.228 0.772 38 H 0.234 0.766 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.794 -23.195 3.061 30.645 hybrid contribution -1.173 -1.128 1.023 1.922 sum 18.620 -24.323 4.084 30.903 Atomic orbital electron populations 1.69941 1.05916 1.27748 1.48117 1.24720 0.94454 0.98966 0.93213 0.86728 0.81882 0.83280 0.79916 1.19211 1.19965 1.15925 1.22321 0.88255 0.97557 1.58702 0.89360 1.84748 1.09325 0.99969 1.97436 1.23284 0.93857 1.04428 1.05965 1.20315 0.90682 0.82141 0.74833 1.90697 1.58752 1.42133 1.47759 1.45892 1.06451 1.08268 1.77267 1.22511 0.82822 0.97159 0.96709 0.87224 1.23962 1.00277 0.84687 0.94975 1.88388 1.91673 1.17897 1.29990 1.23463 0.95702 0.89533 0.87732 1.24466 0.95688 0.92435 1.00325 1.68512 1.03917 0.99676 1.45700 1.22586 0.96400 0.95748 0.98373 1.20464 0.87882 0.80914 0.80811 1.43867 1.25258 1.24851 1.48480 1.90792 1.56109 1.59846 1.32675 1.24385 0.96603 0.90232 1.00565 1.23071 1.04416 0.92687 0.96510 0.91950 0.88379 0.88371 0.76423 0.88793 0.90964 0.88300 0.90160 0.87401 0.90917 0.77204 0.76584 0.90520 0.88039 0.88445 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.96 27.74 -169.99 -4.72 17.24 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 8 H 0.09 2.69 8.03 -52.48 -0.42 2.26 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.45 6.16 36.01 0.22 -2.22 16 11 C 0.53 9.41 7.85 -10.98 -0.09 9.33 16 12 O -0.52 -10.88 15.61 5.56 0.09 -10.79 16 13 N -0.72 -9.41 5.24 -51.52 -0.27 -9.68 16 14 C 0.11 1.25 3.37 -65.57 -0.22 1.03 16 15 H 0.11 1.27 7.74 -51.92 -0.40 0.87 16 16 C 0.04 0.42 7.49 38.21 0.29 0.71 16 17 O -0.36 -4.01 11.14 -35.23 -0.39 -4.40 16 18 C 0.08 0.68 1.68 -90.01 -0.15 0.53 16 19 C 0.00 0.00 7.48 -3.04 -0.02 -0.03 16 20 N -0.45 -3.78 5.92 -241.89 -1.43 -5.22 16 21 C 0.00 0.01 5.31 -4.98 -0.03 -0.02 16 22 C 0.52 4.18 7.91 -10.98 -0.09 4.09 16 23 N -0.86 -3.54 8.87 31.22 0.28 -3.27 16 24 O -0.52 -6.80 16.40 5.56 0.09 -6.71 16 25 C 0.01 0.10 6.20 -2.90 -0.02 0.08 16 26 C -0.13 -1.09 5.90 -25.02 -0.15 -1.24 16 27 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 29 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 30 H 0.40 4.50 8.62 -40.82 -0.35 4.15 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.58 8.01 -51.93 -0.42 0.16 16 34 H 0.08 0.50 7.79 -51.93 -0.40 0.09 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.33 7.70 -51.93 -0.40 -0.07 16 37 H 0.40 0.32 8.83 -40.82 -0.36 -0.04 16 38 H 0.40 1.55 8.93 -40.82 -0.36 1.19 16 39 H 0.08 0.74 7.79 -51.93 -0.40 0.33 16 40 H 0.10 1.09 7.95 -51.93 -0.41 0.67 16 41 H 0.10 0.65 8.01 -51.93 -0.42 0.24 16 42 H 0.10 0.88 7.84 -51.93 -0.41 0.47 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -37.61 365.54 -8.13 -45.75 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.03 Total: 3.11 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.04 Total: 0.12 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.65 Total: -44.24 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.21 Total: -21.90 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.61 -8.13 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484790889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.194 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.27 seconds