Wall clock time and date at job start Tue Mar 31 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 120.00118 * 2 1 4 4 H 1.48496 * 109.46555 * 269.99583 * 3 2 1 5 5 H 1.48492 * 109.46942 * 29.99437 * 3 2 1 6 6 H 1.48495 * 109.47035 * 149.99591 * 3 2 1 7 7 C 1.38799 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99514 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99840 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47014 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99556 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00299 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09006 * 110.76698 * 31.46994 * 14 13 11 16 16 C 1.55053 * 111.04982 * 267.81544 * 14 13 11 17 17 O 1.44609 * 103.66529 * 205.23148 * 16 14 13 18 18 C 1.42848 * 106.73614 * 39.10699 * 17 16 14 19 19 C 1.52679 * 115.92062 * 202.57040 * 18 17 16 20 20 N 1.47638 * 87.72790 * 218.38635 * 19 18 17 21 21 C 1.46903 * 111.00078 * 138.08051 * 20 19 18 22 22 C 1.50694 * 109.47066 * 169.99880 * 21 20 19 23 23 N 1.34784 * 119.99988 * 180.02562 * 22 21 20 24 24 O 1.21283 * 120.00363 * 359.97438 * 22 21 20 25 25 C 1.47632 * 88.01050 * 26.31702 * 20 19 18 26 26 C 1.53339 * 108.31151 * 334.28661 * 18 17 16 27 27 H 0.97002 * 119.99996 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47122 * 60.00786 * 10 9 7 29 29 H 1.08989 * 109.47679 * 300.00058 * 10 9 7 30 30 H 0.97001 * 120.00178 * 0.02562 * 13 11 10 31 31 H 1.09001 * 110.58520 * 323.77601 * 16 14 13 32 32 H 1.09004 * 110.58821 * 86.53787 * 16 14 13 33 33 H 1.08991 * 113.51378 * 103.67346 * 19 18 17 34 34 H 1.09001 * 113.50490 * 333.09482 * 19 18 17 35 35 H 1.08998 * 109.46809 * 49.99981 * 21 20 19 36 36 H 1.09002 * 109.47056 * 289.99722 * 21 20 19 37 37 H 0.97000 * 119.99339 * 0.02562 * 23 22 21 38 38 H 0.96995 * 120.00015 * 179.72576 * 23 22 21 39 39 H 1.08998 * 113.50980 * 88.40151 * 25 20 19 40 40 H 1.08998 * 113.50654 * 218.96790 * 25 20 19 41 41 H 1.09001 * 110.56295 * 120.20845 * 26 18 17 42 42 H 1.08995 * 110.56549 * 243.05240 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0018 14 6 2.3303 -7.7151 0.0019 15 1 1.3809 -7.7724 -0.5307 16 6 2.1860 -8.2557 1.4479 17 8 2.2827 -9.6897 1.2878 18 6 3.2846 -9.9264 0.2976 19 6 3.2056 -11.2696 -0.4241 20 7 4.6809 -11.3109 -0.3848 21 6 5.1610 -12.6570 -0.0450 22 6 6.6519 -12.7259 -0.2529 23 7 7.3149 -13.8725 -0.0030 24 8 7.2552 -11.7499 -0.6458 25 6 4.6217 -10.4519 0.8144 26 6 3.3663 -8.6928 -0.6096 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8906 29 1 3.1244 -3.7314 -0.8893 30 1 3.8008 -6.1836 0.0022 31 1 2.9944 -7.8851 2.0781 32 1 1.2180 -7.9789 1.8658 33 1 2.7993 -11.1979 -1.4329 34 1 2.7328 -12.0536 0.1674 35 1 4.6706 -13.3900 -0.6856 36 1 4.9291 -12.8729 0.9979 37 1 6.8322 -14.6534 0.3102 38 1 8.2740 -13.9180 -0.1406 39 1 4.5383 -11.0112 1.7462 40 1 5.4043 -9.6938 0.8451 41 1 4.3662 -8.2600 -0.5781 42 1 3.0919 -8.9509 -1.6324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484790895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:45 Heat of formation + Delta-G solvation = -70.751362 kcal Electronic energy + Delta-G solvation = -25053.444641 eV Core-core repulsion = 21161.301285 eV Total energy + Delta-G solvation = -3892.143356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.56931 -39.78480 -39.09813 -37.62757 -34.52905 -34.09769 -32.42843 -31.62490 -30.69269 -28.51590 -27.04598 -26.57621 -25.47868 -23.87941 -22.00872 -21.00167 -20.50585 -19.63884 -18.14637 -17.83950 -17.28691 -16.80871 -16.70960 -16.33940 -16.04137 -15.46846 -15.38050 -14.88920 -14.80292 -14.51841 -14.27081 -13.97634 -13.72388 -13.66448 -13.33830 -13.11220 -12.66211 -12.57670 -12.29888 -12.15457 -11.85463 -11.58008 -11.23527 -11.06454 -11.02741 -10.96611 -10.75913 -10.35874 -10.14413 -9.92126 -9.82051 -9.47060 -9.44334 -9.07250 -8.95535 -8.24671 -6.50535 -6.21763 -3.92491 2.22617 2.79504 2.94583 3.00780 3.22883 3.26116 3.30552 3.43716 3.62336 3.74046 3.92706 4.20307 4.30773 4.32008 4.36404 4.47083 4.67121 4.73909 4.85499 4.91366 4.98409 5.13508 5.15105 5.24498 5.30487 5.43387 5.44111 5.58620 5.60131 5.67317 5.75122 5.86775 5.90266 6.12936 6.25220 6.37578 6.46386 6.68682 6.86009 7.59569 7.63060 7.85109 8.35244 8.54199 9.23702 10.85638 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.001934 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.365088 B =14472.756690 C =15192.625056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.728 5.728 14 C 0.116 3.884 15 H 0.108 0.892 16 C 0.036 3.964 17 O -0.354 6.354 18 C 0.079 3.921 19 C 0.007 3.993 20 N -0.442 5.442 21 C -0.002 4.002 22 C 0.518 3.482 23 N -0.861 5.861 24 O -0.519 6.519 25 C -0.012 4.012 26 C -0.125 4.125 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.400 0.600 38 H 0.402 0.598 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.065 -30.000 1.711 32.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.384 5.384 14 C 0.009 3.991 15 H 0.126 0.874 16 C -0.042 4.042 17 O -0.271 6.271 18 C 0.038 3.962 19 C -0.122 4.122 20 N -0.166 5.166 21 C -0.134 4.134 22 C 0.301 3.699 23 N -0.427 5.427 24 O -0.392 6.392 25 C -0.141 4.141 26 C -0.163 4.163 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.228 0.772 38 H 0.233 0.767 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.388 -29.457 0.983 31.250 hybrid contribution 2.364 0.550 0.804 2.556 sum 12.752 -28.907 1.786 31.645 Atomic orbital electron populations 1.70018 1.05946 1.27467 1.46844 1.24994 0.95031 0.99035 0.94516 0.86163 0.79410 0.81549 0.78359 1.20265 1.20752 1.19693 1.22870 0.94926 0.91629 1.58984 0.90893 1.85394 1.04821 0.96339 1.96731 1.23538 1.06678 0.95168 1.05081 1.20386 0.86537 0.86321 0.74736 1.90712 1.15317 1.85533 1.47270 1.45941 1.10045 1.04583 1.77791 1.22480 0.98840 0.81682 0.96084 0.87368 1.24092 1.03397 0.79745 0.96979 1.88802 1.57000 1.23100 1.58221 1.22803 0.88767 0.95256 0.89398 1.24116 0.89594 0.96417 1.02038 1.68805 1.10434 1.07241 1.30083 1.22618 0.93767 0.94783 1.02213 1.20450 0.89747 0.82853 0.76844 1.43885 1.12659 1.14288 1.71835 1.90781 1.69279 1.35449 1.43705 1.24518 0.98100 0.98275 0.93213 1.22736 1.00498 0.93265 0.99835 0.92176 0.89104 0.89063 0.76456 0.91522 0.87890 0.88220 0.90030 0.87582 0.90421 0.77235 0.76687 0.90336 0.88716 0.89110 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.64 7.85 -10.99 -0.09 9.55 16 12 O -0.51 -11.33 15.50 5.55 0.09 -11.25 16 13 N -0.73 -9.34 5.20 -51.72 -0.27 -9.61 16 14 C 0.12 1.34 3.51 -65.78 -0.23 1.11 16 15 H 0.11 1.46 7.54 -51.93 -0.39 1.07 16 16 C 0.04 0.40 7.42 38.24 0.28 0.69 16 17 O -0.35 -3.89 11.32 -35.23 -0.40 -4.29 16 18 C 0.08 0.71 1.65 -90.78 -0.15 0.56 16 19 C 0.01 0.05 7.21 -7.13 -0.05 0.00 16 20 N -0.44 -3.67 5.78 -246.12 -1.42 -5.09 16 21 C 0.00 -0.01 5.29 -4.98 -0.03 -0.04 16 22 C 0.52 3.97 8.17 -10.98 -0.09 3.88 16 23 N -0.86 -3.01 8.87 31.22 0.28 -2.73 16 24 O -0.52 -6.68 17.27 5.56 0.10 -6.58 16 25 C -0.01 -0.10 7.23 -7.13 -0.05 -0.15 16 26 C -0.13 -1.16 6.19 -25.49 -0.16 -1.32 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.40 4.02 8.41 -40.82 -0.34 3.68 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.10 0.68 7.91 -51.93 -0.41 0.27 16 34 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 35 H 0.11 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.08 0.30 7.30 -51.93 -0.38 -0.08 16 37 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 38 H 0.40 1.25 8.93 -40.82 -0.36 0.88 16 39 H 0.08 0.59 7.42 -51.93 -0.39 0.21 16 40 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 41 H 0.09 0.79 7.43 -51.93 -0.39 0.41 16 42 H 0.09 0.83 7.81 -51.93 -0.41 0.42 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -38.00 368.44 -8.62 -46.62 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.90 Total: 1.65 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.14 Total: -1.47 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.68 Total: -42.82 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.22 Total: -22.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.00 -8.62 -46.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484790895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.127 kcal (2) G-P(sol) polarization free energy of solvation -38.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds