Wall clock time and date at job start Tue Mar 31 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87480 * 2 1 4 4 C 1.54324 * 109.88070 * 238.98343 * 2 1 3 5 5 C 1.55549 * 102.75997 * 218.26624 * 4 2 1 6 6 H 1.09001 * 110.96288 * 153.60045 * 5 4 2 7 7 N 1.46490 * 111.06089 * 277.42418 * 5 4 2 8 8 C 1.34777 * 120.00385 * 198.70056 * 7 5 4 9 9 O 1.21290 * 119.99546 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00552 * 180.02562 * 8 7 5 11 11 S 1.81000 * 109.47317 * 180.02562 * 10 8 7 12 12 C 1.76196 * 100.00044 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00016 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99955 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99943 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.46881 * 90.00035 * 16 14 12 18 18 H 1.48495 * 109.46881 * 210.00471 * 16 14 12 19 19 H 1.48494 * 109.46906 * 330.00223 * 16 14 12 20 20 C 1.54903 * 101.59848 * 35.53443 * 5 4 2 21 21 N 1.47020 * 109.88310 * 121.01866 * 2 1 3 22 22 C 1.34784 * 125.64907 * 298.54586 * 21 2 1 23 23 O 1.21286 * 119.99597 * 0.02562 * 22 21 2 24 24 C 1.50695 * 119.99961 * 180.02562 * 22 21 2 25 25 C 1.50707 * 109.47024 * 180.02562 * 24 22 21 26 26 N 1.34770 * 120.00228 * 179.97438 * 25 24 22 27 27 O 1.21284 * 119.99723 * 359.97438 * 25 24 22 28 28 H 1.09012 * 109.46904 * 300.70170 * 1 2 3 29 29 H 1.08999 * 109.47322 * 60.69868 * 1 2 3 30 30 H 1.08999 * 109.47267 * 180.70415 * 1 2 3 31 31 H 1.09003 * 110.72146 * 336.60153 * 4 2 1 32 32 H 1.08999 * 110.72099 * 99.87356 * 4 2 1 33 33 H 0.97000 * 120.00420 * 18.70498 * 7 5 4 34 34 H 1.08995 * 109.46944 * 300.00294 * 10 8 7 35 35 H 1.09002 * 109.46721 * 60.00521 * 10 8 7 36 36 H 0.96999 * 120.00172 * 179.97438 * 15 14 12 37 37 H 1.09003 * 110.37077 * 204.11646 * 20 5 4 38 38 H 1.09004 * 110.46419 * 81.83630 * 20 5 4 39 39 H 1.08998 * 109.47234 * 299.99548 * 24 22 21 40 40 H 1.08990 * 109.47349 * 59.99971 * 24 22 21 41 41 H 0.97004 * 119.99797 * 0.02562 * 26 25 24 42 42 H 0.96995 * 120.00352 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2918 -1.5108 -0.6894 6 1 3.4920 -2.4074 -1.2760 7 7 4.4701 -0.6416 -0.6453 8 6 5.7026 -1.1808 -0.5630 9 8 5.8361 -2.3857 -0.5259 10 6 6.9148 -0.2866 -0.5171 11 16 8.4095 -1.3016 -0.4092 12 6 9.6359 -0.0371 -0.3706 13 1 9.3422 1.0014 -0.4114 14 6 10.9794 -0.3757 -0.2868 15 7 11.3373 -1.6414 -0.2366 16 14 12.2797 0.9650 -0.2467 17 1 12.5456 1.3545 1.1614 18 1 13.5313 0.4592 -0.8653 19 1 11.7955 2.1468 -1.0042 20 6 2.8176 -1.8763 0.7393 21 7 2.0300 -0.7125 1.1849 22 6 1.8050 -0.3603 2.4663 23 8 1.1380 0.6211 2.7173 24 6 2.3822 -1.1860 3.5870 25 6 1.9859 -0.5835 4.9104 26 7 2.3909 -1.1575 6.0605 27 8 1.3026 0.4181 4.9403 28 1 -0.3633 0.5248 0.8837 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 1.3060 -1.4457 -1.6187 32 1 2.3503 -0.0433 -2.0212 33 1 4.3634 0.3221 -0.6752 34 1 6.9528 0.3206 -1.4214 35 1 6.8534 0.3641 0.3552 36 1 12.2762 -1.8780 -0.1784 37 1 3.6742 -2.0286 1.3960 38 1 2.1941 -2.7701 0.7169 39 1 1.9990 -2.2043 3.5227 40 1 3.4689 -1.2008 3.5050 41 1 2.9378 -1.9584 6.0365 42 1 2.1362 -0.7696 6.9122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488179864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:46 Heat of formation + Delta-G solvation = -107.528489 kcal Electronic energy + Delta-G solvation = -25775.106820 eV Core-core repulsion = 21881.368687 eV Total energy + Delta-G solvation = -3893.738132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85152 -39.73858 -38.76229 -37.30242 -34.06398 -33.85257 -32.54773 -32.47198 -30.80042 -29.99252 -28.49924 -26.19645 -25.52728 -23.37336 -21.88460 -20.87123 -20.37009 -19.13232 -17.94735 -17.71080 -17.51113 -16.91125 -16.39545 -16.09980 -16.05987 -15.24892 -15.12648 -14.84005 -14.72815 -14.20918 -14.05405 -13.78687 -13.65455 -13.36123 -13.23356 -12.92283 -12.68246 -12.64094 -12.31735 -12.19961 -11.98507 -11.67661 -11.54623 -11.09950 -11.06937 -11.02546 -10.79180 -10.36531 -9.89127 -9.86329 -9.60607 -9.53387 -9.21075 -9.10211 -8.73244 -8.30484 -6.55639 -6.26386 -3.97270 2.38594 2.54715 2.56981 2.92217 2.94420 3.19656 3.24881 3.28612 3.37426 3.61584 3.99519 4.16246 4.21211 4.37495 4.60489 4.68136 4.85611 4.87916 4.95459 5.03892 5.09226 5.11037 5.15097 5.27664 5.37495 5.43353 5.50663 5.54304 5.73105 5.80467 5.82016 5.98854 6.08254 6.18213 6.49888 6.53682 7.03922 7.28665 7.55223 7.57362 7.98503 8.14461 8.30906 8.47400 9.19477 10.80978 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.002848 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.033250 B = 9830.212395 C =11111.470624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.136 3.864 6 H 0.111 0.889 7 N -0.728 5.728 8 C 0.535 3.465 9 O -0.516 6.516 10 C -0.155 4.155 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.084 3.916 21 N -0.617 5.617 22 C 0.532 3.468 23 O -0.495 6.495 24 C -0.166 4.166 25 C 0.517 3.483 26 N -0.860 5.860 27 O -0.500 6.500 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.401 0.599 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.756 -1.512 3.587 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.094 0.906 4 C -0.173 4.173 5 C 0.030 3.970 6 H 0.129 0.871 7 N -0.383 5.383 8 C 0.321 3.679 9 O -0.390 6.390 10 C -0.306 4.306 11 S 0.168 5.832 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.040 4.040 21 N -0.354 5.354 22 C 0.318 3.682 23 O -0.368 6.368 24 C -0.209 4.209 25 C 0.300 3.700 26 N -0.425 5.425 27 O -0.372 6.372 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.229 0.771 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -21.229 -2.412 3.699 21.683 hybrid contribution 1.012 2.250 0.342 2.491 sum -20.217 -0.162 4.041 20.617 Atomic orbital electron populations 1.22137 0.94548 1.02281 1.03069 1.21533 0.94783 0.96433 0.84076 0.90559 1.23150 0.96924 1.00318 0.96897 1.22005 0.84852 0.95138 0.95036 0.87104 1.45964 1.05016 1.09968 1.77325 1.20344 0.83561 0.89159 0.74796 1.90706 1.85889 1.14871 1.47516 1.23544 0.98839 1.03154 1.05015 1.85340 0.91949 1.09569 1.96342 1.22867 0.92884 0.93914 1.58801 0.90928 1.24984 0.97845 0.96205 0.94467 1.70009 1.17598 1.16012 1.46671 0.86171 0.80055 0.80871 0.78450 1.20254 1.20727 1.19670 1.22879 0.95509 0.88654 0.96974 1.48569 1.53074 1.28963 1.04753 1.19540 0.81228 0.85560 0.81863 1.90851 1.37573 1.26085 1.82249 1.21599 1.04850 1.01818 0.92619 1.19974 0.80147 0.84379 0.85545 1.43851 1.57466 1.32779 1.08427 1.90904 1.35843 1.23618 1.86879 0.91080 0.91694 0.92505 0.88793 0.89040 0.76620 0.89155 0.89258 0.92157 0.89713 0.90250 0.86101 0.85782 0.77094 0.76645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.10 37.16 0.34 -1.04 16 2 C 0.13 1.17 3.44 -66.95 -0.23 0.94 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -0.89 6.08 -24.68 -0.15 -1.04 16 5 C 0.14 1.24 3.33 -65.58 -0.22 1.02 16 6 H 0.11 1.09 7.73 -51.93 -0.40 0.69 16 7 N -0.73 -8.28 5.22 -51.53 -0.27 -8.55 16 8 C 0.53 8.81 7.85 -10.98 -0.09 8.73 16 9 O -0.52 -10.27 15.61 5.55 0.09 -10.19 16 10 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 11 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 12 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 16 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.08 0.72 6.38 -2.53 -0.02 0.70 16 21 N -0.62 -5.99 3.07 -163.02 -0.50 -6.49 16 22 C 0.53 6.42 7.63 -10.98 -0.08 6.34 16 23 O -0.50 -8.18 13.21 -18.96 -0.25 -8.43 16 24 C -0.17 -1.43 5.19 -29.03 -0.15 -1.58 16 25 C 0.52 5.62 8.09 -10.99 -0.09 5.53 16 26 N -0.86 -5.56 8.87 31.22 0.28 -5.28 16 27 O -0.50 -8.21 15.02 -18.96 -0.28 -8.49 16 28 H 0.07 0.81 6.88 -51.92 -0.36 0.45 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.49 7.85 -51.93 -0.41 0.08 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 3.84 8.62 -40.82 -0.35 3.48 16 34 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 0.90 7.85 -51.93 -0.41 0.49 16 41 H 0.40 1.34 8.83 -40.82 -0.36 0.98 16 42 H 0.40 2.34 8.93 -40.82 -0.36 1.97 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -39.20 369.33 -8.11 -47.31 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.97 Total: 2.80 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.27 Total: 4.27 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.24 Total: -45.12 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.45 Total: -27.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.20 -8.11 -47.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488179864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.217 kcal (2) G-P(sol) polarization free energy of solvation -39.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds