Wall clock time and date at job start Tue Mar 31 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.69956 * 2 1 4 4 C 1.53195 * 109.58331 * 239.64547 * 2 1 3 5 5 C 1.53044 * 109.31014 * 185.58046 * 4 2 1 6 6 C 1.53041 * 109.53877 * 61.36501 * 5 4 2 7 7 H 1.08995 * 109.49502 * 178.65183 * 6 5 4 8 8 N 1.46495 * 109.49760 * 58.58617 * 6 5 4 9 9 C 1.34779 * 119.99818 * 154.72609 * 8 6 5 10 10 O 1.21349 * 120.00093 * 359.97438 * 9 8 6 11 11 C 1.49450 * 119.99924 * 179.97438 * 9 8 6 12 12 N 1.34779 * 119.99924 * 179.97438 * 11 9 8 13 13 O 1.21349 * 120.00041 * 0.02562 * 11 9 8 14 14 C 1.53193 * 109.31161 * 298.63356 * 6 5 4 15 15 N 1.46925 * 109.58370 * 120.35697 * 2 1 3 16 16 C 1.34769 * 120.63614 * 353.37197 * 15 2 1 17 17 O 1.21285 * 119.99687 * 5.06982 * 16 15 2 18 18 C 1.50701 * 120.00496 * 185.07148 * 16 15 2 19 19 S 1.81001 * 109.47111 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99695 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99984 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00102 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99670 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00120 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47112 * 90.00353 * 24 22 20 26 26 H 1.48504 * 109.47003 * 210.00096 * 24 22 20 27 27 H 1.48498 * 109.47400 * 329.99808 * 24 22 20 28 28 H 1.08995 * 109.47572 * 183.97112 * 1 2 3 29 29 H 1.09004 * 109.46997 * 303.97490 * 1 2 3 30 30 H 1.09005 * 109.47571 * 63.97117 * 1 2 3 31 31 H 1.08997 * 109.50182 * 65.62721 * 4 2 1 32 32 H 1.09000 * 109.52256 * 305.54526 * 4 2 1 33 33 H 1.09004 * 109.45902 * 301.34436 * 5 4 2 34 34 H 1.08999 * 109.44848 * 181.38180 * 5 4 2 35 35 H 0.96996 * 120.00316 * 335.00227 * 8 6 5 36 36 H 0.96995 * 120.00226 * 359.97438 * 12 11 9 37 37 H 0.96997 * 119.99793 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.58687 * 174.42491 * 14 6 5 39 39 H 1.08997 * 109.58775 * 294.84672 * 14 6 5 40 40 H 1.08998 * 109.46929 * 300.00290 * 18 16 15 41 41 H 1.09006 * 109.46693 * 59.99908 * 18 16 15 42 42 H 0.96998 * 119.99787 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2455 5 6 3.5674 -0.8481 -1.1702 6 6 3.9568 -1.6658 0.0634 7 1 5.0410 -1.7702 0.1033 8 7 3.3404 -2.9925 -0.0149 9 6 3.9000 -4.0347 0.6310 10 8 4.9147 -3.8743 1.2769 11 6 3.2708 -5.3880 0.5516 12 7 3.8307 -6.4304 1.1970 13 8 2.2564 -5.5486 -0.0948 14 6 3.4650 -0.9470 1.3237 15 7 2.0224 -0.6996 1.1945 16 6 1.1674 -1.1062 2.1536 17 8 -0.0281 -0.9785 1.9940 18 6 1.6967 -1.7195 3.4243 19 16 0.3123 -2.1579 4.5048 20 6 1.1941 -2.8318 5.8735 21 1 2.2732 -2.8717 5.8539 22 6 0.5018 -3.3122 6.9764 23 7 -0.8134 -3.2640 7.0000 24 14 1.4365 -4.0273 8.4270 25 1 1.7412 -2.9478 9.4001 26 1 0.6070 -5.0680 9.0859 27 1 2.7042 -4.6346 7.9483 28 1 -0.3634 -1.0251 0.0712 29 1 -0.3633 0.5743 0.8523 30 1 -0.3634 0.4510 -0.9234 31 1 1.7659 -0.1669 -2.1369 32 1 1.6028 -1.7253 -1.2919 33 1 4.0061 0.1473 -1.0993 34 1 3.9375 -1.3450 -2.0670 35 1 2.5318 -3.1217 -0.5348 36 1 4.6422 -6.3023 1.7127 37 1 3.4226 -7.3088 1.1451 38 1 3.6518 -1.5719 2.1971 39 1 3.9903 0.0019 1.4317 40 1 2.2688 -2.6157 3.1843 41 1 2.3412 -1.0024 3.9328 42 1 -1.2973 -3.6001 7.7706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488695310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:20 Heat of formation + Delta-G solvation = -92.892621 kcal Electronic energy + Delta-G solvation = -27148.194507 eV Core-core repulsion = 23255.091033 eV Total energy + Delta-G solvation = -3893.103474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07640 -40.07992 -38.54727 -37.37455 -34.75758 -33.65077 -33.26644 -32.42012 -31.46803 -29.04504 -27.31180 -25.50071 -25.39123 -24.45969 -22.25963 -21.11571 -20.56807 -18.94063 -18.81548 -17.62636 -17.22936 -16.55123 -16.25209 -16.07530 -16.02987 -15.44130 -15.15646 -14.79691 -14.65681 -14.30457 -14.09508 -13.76788 -13.58979 -13.42123 -13.08485 -13.00491 -12.56853 -12.31973 -12.10506 -12.03811 -11.81833 -11.43175 -11.23563 -11.09050 -11.05703 -11.00717 -10.81438 -10.74509 -10.01245 -9.83831 -9.79390 -9.58998 -9.05692 -8.68092 -8.39627 -8.21716 -6.48640 -6.20794 -3.90926 1.29284 2.32218 2.90429 3.03484 3.11586 3.22517 3.25726 3.30385 3.58626 3.69797 4.20857 4.33124 4.44631 4.46920 4.58581 4.73171 4.95990 5.12396 5.14361 5.16972 5.21681 5.38168 5.47467 5.54906 5.57125 5.64471 5.71230 5.85977 5.87023 5.91649 6.06140 6.13187 6.30884 6.35066 6.51080 6.75147 6.85177 7.11916 7.55821 7.60829 7.62525 7.88111 8.36351 8.59582 9.24667 10.86656 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.004659 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.596568 B = 6008.620206 C = 7609.842783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.145 3.855 3 H 0.069 0.931 4 C -0.136 4.136 5 C -0.126 4.126 6 C 0.129 3.871 7 H 0.105 0.895 8 N -0.689 5.689 9 C 0.508 3.492 10 O -0.519 6.519 11 C 0.514 3.486 12 N -0.821 5.821 13 O -0.519 6.519 14 C 0.095 3.905 15 N -0.616 5.616 16 C 0.536 3.464 17 O -0.505 6.505 18 C -0.151 4.151 19 S -0.058 6.058 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.413 0.587 36 H 0.414 0.586 37 H 0.412 0.588 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.812 2.286 -17.928 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.175 4.175 5 C -0.164 4.164 6 C 0.024 3.976 7 H 0.123 0.877 8 N -0.344 5.344 9 C 0.289 3.711 10 O -0.395 6.395 11 C 0.292 3.708 12 N -0.387 5.387 13 O -0.394 6.394 14 C -0.029 4.029 15 N -0.353 5.353 16 C 0.325 3.675 17 O -0.380 6.380 18 C -0.302 4.302 19 S 0.168 5.832 20 C -0.682 4.682 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.931 2.644 -18.055 21.271 hybrid contribution 1.972 -1.047 1.217 2.543 sum 12.903 1.597 -16.838 21.273 Atomic orbital electron populations 1.22225 0.92215 1.04430 1.00594 1.21243 0.96245 0.94693 0.83621 0.91262 1.22068 0.95075 1.01802 0.98516 1.21824 0.96864 1.00720 0.97003 1.21510 0.98910 0.81308 0.95896 0.87681 1.45839 1.30037 1.07752 1.50736 1.20106 0.84706 0.85926 0.80409 1.90770 1.23859 1.84998 1.39835 1.20071 0.84409 0.86241 0.80083 1.43486 1.31301 1.11314 1.52553 1.90833 1.23376 1.84750 1.40444 1.22146 0.81372 1.00704 0.98719 1.48099 1.06696 1.59603 1.20878 1.20254 0.86283 0.77164 0.83843 1.90754 1.15245 1.53515 1.78449 1.23596 1.06408 1.02670 0.97514 1.85342 1.05054 1.79138 1.13627 1.22857 0.94962 1.46855 1.03569 0.91052 1.24974 0.95001 0.95382 0.98126 1.70019 1.06026 1.43982 1.30287 0.86191 0.79415 0.78772 0.81279 1.20240 1.20747 1.19693 0.90667 0.90657 0.94295 0.90159 0.91378 0.89661 0.90708 0.74878 0.75570 0.75586 0.88609 0.90105 0.89990 0.89483 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.59 37.16 0.28 -1.58 16 2 C 0.15 1.62 3.49 -67.60 -0.24 1.39 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.13 5.21 -26.61 -0.14 -1.27 16 5 C -0.13 -0.85 5.59 -26.69 -0.15 -1.00 16 6 C 0.13 1.17 2.82 -67.81 -0.19 0.98 16 7 H 0.11 0.90 7.57 -51.93 -0.39 0.50 16 8 N -0.69 -7.63 4.91 -54.12 -0.27 -7.90 16 9 C 0.51 6.48 7.86 -11.58 -0.09 6.39 16 10 O -0.52 -7.22 16.13 5.50 0.09 -7.13 16 11 C 0.51 6.67 8.16 -11.58 -0.09 6.58 16 12 N -0.82 -7.90 8.87 30.90 0.27 -7.62 16 13 O -0.52 -8.13 17.31 5.50 0.10 -8.04 16 14 C 0.10 1.05 5.93 -3.71 -0.02 1.03 16 15 N -0.62 -8.37 2.89 -165.22 -0.48 -8.84 16 16 C 0.54 10.05 7.62 -10.99 -0.08 9.96 16 17 O -0.51 -10.93 11.26 5.55 0.06 -10.87 16 18 C -0.15 -3.17 4.56 36.01 0.16 -3.00 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 29 H 0.07 1.22 6.76 -51.93 -0.35 0.87 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.65 6.40 -51.93 -0.33 0.32 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 4.66 6.24 -40.82 -0.25 4.41 16 36 H 0.41 3.40 8.30 -40.82 -0.34 3.06 16 37 H 0.41 3.20 8.93 -40.82 -0.36 2.83 16 38 H 0.10 1.26 5.96 -51.93 -0.31 0.96 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.68 7.48 -51.92 -0.39 1.29 16 41 H 0.09 1.72 8.11 -51.91 -0.42 1.30 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -36.20 357.32 -7.29 -43.49 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.58 Total: 7.97 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.36 Total: 6.40 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.26 Total: -49.98 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.25 Total: -26.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.20 -7.29 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488695310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.403 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds