Wall clock time and date at job start Tue Mar 31 2020 07:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.70080 * 2 1 4 4 C 1.53617 * 109.66340 * 120.59430 * 2 1 3 5 5 C 1.53042 * 109.24345 * 174.54789 * 4 2 1 6 6 C 1.53041 * 109.53744 * 298.51553 * 5 4 2 7 7 H 1.09004 * 109.49635 * 301.40641 * 6 5 4 8 8 N 1.46499 * 109.52385 * 181.33375 * 6 5 4 9 9 C 1.34775 * 120.00284 * 155.14315 * 8 6 5 10 10 O 1.21351 * 119.99718 * 359.97438 * 9 8 6 11 11 C 1.49451 * 120.00192 * 179.97438 * 9 8 6 12 12 N 1.34777 * 119.99678 * 180.02562 * 11 9 8 13 13 O 1.21346 * 119.99704 * 0.02562 * 11 9 8 14 14 C 1.53188 * 109.31710 * 61.36027 * 6 5 4 15 15 N 1.46924 * 108.77386 * 305.36752 * 14 6 5 16 16 C 1.34775 * 120.63227 * 233.58135 * 15 14 6 17 17 O 1.21281 * 120.00267 * 174.91830 * 16 15 14 18 18 C 1.50704 * 119.99699 * 354.92153 * 16 15 14 19 19 S 1.81001 * 109.46806 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99632 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99667 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99816 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47060 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.46775 * 300.00471 * 24 22 20 27 27 H 1.48496 * 109.46981 * 60.00393 * 24 22 20 28 28 H 1.09000 * 109.47704 * 176.11858 * 1 2 3 29 29 H 1.09002 * 109.47102 * 296.12434 * 1 2 3 30 30 H 1.09008 * 109.47400 * 56.12020 * 1 2 3 31 31 H 1.08998 * 109.63937 * 54.55816 * 4 2 1 32 32 H 1.08998 * 109.46305 * 294.43507 * 4 2 1 33 33 H 1.08997 * 109.46419 * 178.49112 * 5 4 2 34 34 H 1.09005 * 109.45583 * 58.53046 * 5 4 2 35 35 H 0.97005 * 120.00145 * 335.13554 * 8 6 5 36 36 H 0.96999 * 120.00567 * 359.97438 * 12 11 9 37 37 H 0.97000 * 119.99594 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.58993 * 185.58003 * 14 6 5 39 39 H 1.09000 * 109.58185 * 65.14997 * 14 6 5 40 40 H 1.08989 * 109.47160 * 59.99953 * 18 16 15 41 41 H 1.09001 * 109.46893 * 299.99275 * 18 16 15 42 42 H 0.96998 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7362 1.2452 5 6 3.5711 -0.8498 1.1676 6 6 3.9614 -1.6627 -0.0690 7 1 3.5061 -2.6515 -0.0129 8 7 5.4190 -1.7983 -0.1257 9 6 5.9743 -2.8361 -0.7823 10 8 5.2668 -3.6584 -1.3261 11 6 7.4613 -2.9741 -0.8406 12 7 8.0165 -4.0116 -1.4977 13 8 8.1687 -2.1519 -0.2964 14 6 3.4656 -0.9420 -1.3265 15 7 2.0225 -0.6995 -1.1945 16 6 1.1674 -1.1060 -2.1536 17 8 -0.0283 -0.9832 -1.9918 18 6 1.6970 -1.7133 -3.4272 19 16 0.3125 -2.1544 -4.5064 20 6 1.1945 -2.8204 -5.8787 21 1 2.2738 -2.8550 -5.8616 22 6 0.5021 -3.3006 -6.9817 23 7 -0.8133 -3.2580 -7.0028 24 14 1.4372 -4.0073 -8.4363 25 1 0.4740 -4.4475 -9.4773 26 1 2.3343 -2.9671 -9.0006 27 1 2.2466 -5.1685 -7.9875 28 1 -0.3634 -1.0253 -0.0696 29 1 -0.3633 0.4525 0.9227 30 1 -0.3634 0.5729 -0.8532 31 1 1.6096 -1.7337 1.2889 32 1 1.7688 -0.1777 2.1389 33 1 3.9442 -1.3481 2.0623 34 1 4.0065 0.1471 1.0990 35 1 5.9846 -1.1411 0.3093 36 1 7.4510 -4.6690 -1.9325 37 1 8.9816 -4.1013 -1.5353 38 1 3.6531 -1.5636 -2.2019 39 1 3.9877 0.0090 -1.4323 40 1 2.2725 -2.6082 -3.1911 41 1 2.3380 -0.9922 -3.9344 42 1 -1.2971 -3.5932 -7.7738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488695313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:04 Heat of formation + Delta-G solvation = -94.523247 kcal Electronic energy + Delta-G solvation = -26293.674441 eV Core-core repulsion = 22400.500258 eV Total energy + Delta-G solvation = -3893.174183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08054 -40.21320 -38.75312 -37.37063 -35.15474 -33.90892 -33.23772 -32.40180 -31.50381 -28.96637 -27.31176 -25.57627 -25.41065 -24.30404 -22.21549 -21.33044 -20.69500 -19.16393 -18.84990 -17.69902 -17.50756 -16.51309 -16.45751 -16.31298 -15.80697 -15.63597 -15.29765 -14.77954 -14.74499 -14.35049 -14.10268 -14.03078 -13.71561 -13.37142 -13.07304 -12.89961 -12.49720 -12.29532 -12.15394 -12.10918 -11.92785 -11.39800 -11.19897 -11.10245 -11.01688 -10.99015 -10.94001 -10.73921 -10.28300 -10.04243 -9.78562 -9.72907 -9.03091 -8.68968 -8.44841 -8.20569 -6.46677 -6.18831 -3.88825 1.07015 2.07266 2.84934 2.92023 3.04376 3.25365 3.26326 3.30466 3.48697 3.65365 4.20567 4.23316 4.32159 4.48639 4.60904 4.75005 4.98913 4.99639 5.15537 5.16359 5.24082 5.41689 5.51227 5.54468 5.61564 5.64704 5.69653 5.86427 5.88033 5.92541 5.97681 6.08830 6.18245 6.31056 6.47258 6.54129 6.83376 6.93392 7.43283 7.54190 7.62624 7.65813 8.38258 8.58138 9.26588 10.88616 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.004104 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.860329 B = 6821.759980 C = 9639.542844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.143 3.857 3 H 0.069 0.931 4 C -0.127 4.127 5 C -0.126 4.126 6 C 0.128 3.872 7 H 0.100 0.900 8 N -0.694 5.694 9 C 0.503 3.497 10 O -0.505 6.505 11 C 0.516 3.484 12 N -0.821 5.821 13 O -0.525 6.525 14 C 0.100 3.900 15 N -0.615 5.615 16 C 0.538 3.462 17 O -0.504 6.504 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.075 3.925 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.283 1.283 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.417 0.583 37 H 0.411 0.589 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.600 3.779 17.624 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.164 4.164 6 C 0.023 3.977 7 H 0.118 0.882 8 N -0.348 5.348 9 C 0.283 3.717 10 O -0.379 6.379 11 C 0.295 3.705 12 N -0.387 5.387 13 O -0.401 6.401 14 C -0.026 4.026 15 N -0.352 5.352 16 C 0.326 3.674 17 O -0.379 6.379 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.504 5.504 24 Si 0.743 3.257 25 H -0.208 1.208 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.247 0.753 37 H 0.244 0.756 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.406 3.933 17.755 22.593 hybrid contribution 2.663 -0.693 -1.206 3.005 sum 16.069 3.240 16.549 23.294 Atomic orbital electron populations 1.22223 0.92098 1.04471 1.00648 1.21379 0.96329 0.94683 0.83624 0.91273 1.22069 0.94019 1.02238 0.98317 1.21813 0.97248 1.00467 0.96845 1.21518 0.78643 1.01637 0.95894 0.88155 1.45738 1.07930 1.27057 1.54099 1.20122 0.88791 0.82599 0.80188 1.90867 1.62916 1.40963 1.43170 1.20111 0.89105 0.82115 0.79206 1.43550 1.12071 1.27707 1.55351 1.90813 1.63396 1.41250 1.44634 1.22023 0.81285 1.00592 0.98658 1.48061 1.06343 1.59716 1.21086 1.20294 0.86247 0.76992 0.83864 1.90750 1.15181 1.53406 1.78524 1.23627 1.06488 1.03054 0.97289 1.85305 1.05101 1.79347 1.13519 1.22819 0.94931 1.47086 1.03382 0.91057 1.24969 0.95002 0.95355 0.98137 1.70003 1.06017 1.43948 1.30418 0.86247 0.79273 0.79343 0.80789 1.20812 1.19976 1.19917 0.90588 0.94235 0.90629 0.90824 0.90087 0.90694 0.90838 0.75031 0.75254 0.75628 0.88598 0.91141 0.89180 0.89534 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.60 37.16 0.28 -1.57 16 2 C 0.14 1.63 3.51 -67.38 -0.24 1.39 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.09 5.40 -26.39 -0.14 -1.24 16 5 C -0.13 -0.90 5.35 -26.69 -0.14 -1.04 16 6 C 0.13 1.22 2.60 -67.81 -0.18 1.05 16 7 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 8 N -0.69 -5.96 5.08 -54.12 -0.27 -6.24 16 9 C 0.50 5.27 7.86 -11.59 -0.09 5.18 16 10 O -0.51 -6.81 16.14 5.50 0.09 -6.72 16 11 C 0.52 4.86 8.16 -11.58 -0.09 4.76 16 12 N -0.82 -5.30 8.87 30.90 0.27 -5.02 16 13 O -0.53 -5.97 17.31 5.50 0.10 -5.88 16 14 C 0.10 1.15 5.90 -3.71 -0.02 1.13 16 15 N -0.61 -8.56 2.97 -164.97 -0.49 -9.05 16 16 C 0.54 10.09 7.62 -10.98 -0.08 10.01 16 17 O -0.50 -10.84 11.26 5.56 0.06 -10.78 16 18 C -0.15 -3.22 4.56 36.01 0.16 -3.05 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.08 1.21 6.73 -51.93 -0.35 0.86 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.21 6.77 -51.92 -0.35 0.86 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 2.80 8.08 -40.82 -0.33 2.48 16 36 H 0.42 2.41 8.30 -40.82 -0.34 2.07 16 37 H 0.41 1.78 8.93 -40.82 -0.36 1.42 16 38 H 0.10 1.29 5.96 -51.93 -0.31 0.98 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.83 7.48 -51.92 -0.39 1.44 16 41 H 0.09 1.71 8.11 -51.92 -0.42 1.28 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -36.08 360.89 -7.40 -43.48 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.75 Total: 4.06 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.34 Total: 3.56 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.24 Total: -45.92 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.25 Total: -23.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.08 -7.40 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488695313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.045 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds