Wall clock time and date at job start Tue Mar 31 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.70080 * 2 1 4 4 C 1.53617 * 109.66340 * 120.59430 * 2 1 3 5 5 C 1.53042 * 109.24345 * 174.54789 * 4 2 1 6 6 C 1.53041 * 109.53744 * 298.51553 * 5 4 2 7 7 H 1.09004 * 109.49635 * 301.40641 * 6 5 4 8 8 N 1.46499 * 109.52385 * 181.33375 * 6 5 4 9 9 C 1.34775 * 120.00284 * 155.14315 * 8 6 5 10 10 O 1.21351 * 119.99718 * 359.97438 * 9 8 6 11 11 C 1.49451 * 120.00192 * 179.97438 * 9 8 6 12 12 N 1.34777 * 119.99678 * 180.02562 * 11 9 8 13 13 O 1.21346 * 119.99704 * 0.02562 * 11 9 8 14 14 C 1.53188 * 109.31710 * 61.36027 * 6 5 4 15 15 N 1.46924 * 108.77386 * 305.36752 * 14 6 5 16 16 C 1.34775 * 120.63227 * 233.58135 * 15 14 6 17 17 O 1.21281 * 120.00267 * 174.91830 * 16 15 14 18 18 C 1.50704 * 119.99699 * 354.92153 * 16 15 14 19 19 S 1.81001 * 109.46806 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99632 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99667 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99816 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47060 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.46775 * 300.00471 * 24 22 20 27 27 H 1.48496 * 109.46981 * 60.00393 * 24 22 20 28 28 H 1.09000 * 109.47704 * 176.11858 * 1 2 3 29 29 H 1.09002 * 109.47102 * 296.12434 * 1 2 3 30 30 H 1.09008 * 109.47400 * 56.12020 * 1 2 3 31 31 H 1.08998 * 109.63937 * 54.55816 * 4 2 1 32 32 H 1.08998 * 109.46305 * 294.43507 * 4 2 1 33 33 H 1.08997 * 109.46419 * 178.49112 * 5 4 2 34 34 H 1.09005 * 109.45583 * 58.53046 * 5 4 2 35 35 H 0.97005 * 120.00145 * 335.13554 * 8 6 5 36 36 H 0.96999 * 120.00567 * 359.97438 * 12 11 9 37 37 H 0.97000 * 119.99594 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.58993 * 185.58003 * 14 6 5 39 39 H 1.09000 * 109.58185 * 65.14997 * 14 6 5 40 40 H 1.08989 * 109.47160 * 59.99953 * 18 16 15 41 41 H 1.09001 * 109.46893 * 299.99275 * 18 16 15 42 42 H 0.96998 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7362 1.2452 5 6 3.5711 -0.8498 1.1676 6 6 3.9614 -1.6627 -0.0690 7 1 3.5061 -2.6515 -0.0129 8 7 5.4190 -1.7983 -0.1257 9 6 5.9743 -2.8361 -0.7823 10 8 5.2668 -3.6584 -1.3261 11 6 7.4613 -2.9741 -0.8406 12 7 8.0165 -4.0116 -1.4977 13 8 8.1687 -2.1519 -0.2964 14 6 3.4656 -0.9420 -1.3265 15 7 2.0225 -0.6995 -1.1945 16 6 1.1674 -1.1060 -2.1536 17 8 -0.0283 -0.9832 -1.9918 18 6 1.6970 -1.7133 -3.4272 19 16 0.3125 -2.1544 -4.5064 20 6 1.1945 -2.8204 -5.8787 21 1 2.2738 -2.8550 -5.8616 22 6 0.5021 -3.3006 -6.9817 23 7 -0.8133 -3.2580 -7.0028 24 14 1.4372 -4.0073 -8.4363 25 1 0.4740 -4.4475 -9.4773 26 1 2.3343 -2.9671 -9.0006 27 1 2.2466 -5.1685 -7.9875 28 1 -0.3634 -1.0253 -0.0696 29 1 -0.3633 0.4525 0.9227 30 1 -0.3634 0.5729 -0.8532 31 1 1.6096 -1.7337 1.2889 32 1 1.7688 -0.1777 2.1389 33 1 3.9442 -1.3481 2.0623 34 1 4.0065 0.1471 1.0990 35 1 5.9846 -1.1411 0.3093 36 1 7.4510 -4.6690 -1.9325 37 1 8.9816 -4.1013 -1.5353 38 1 3.6531 -1.5636 -2.2019 39 1 3.9877 0.0090 -1.4323 40 1 2.2725 -2.6082 -3.1911 41 1 2.3380 -0.9922 -3.9344 42 1 -1.2971 -3.5932 -7.7738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488695313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:01 Heat of formation + Delta-G solvation = -124.395138 kcal Electronic energy + Delta-G solvation = -26294.969783 eV Core-core repulsion = 22400.500258 eV Total energy + Delta-G solvation = -3894.469525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = -3.47 seconds Orbital eigenvalues (eV) -41.97096 -41.31050 -39.63149 -38.46012 -36.07012 -34.62361 -34.59597 -34.36059 -32.38135 -30.45539 -28.35456 -27.64894 -26.45213 -25.14307 -23.21130 -22.20843 -21.48970 -20.46485 -19.69136 -19.42102 -18.38832 -17.74870 -17.42672 -17.17794 -16.89758 -16.84857 -16.72810 -16.29714 -15.87688 -15.59671 -15.11015 -14.95128 -14.85621 -14.61252 -14.51812 -14.28227 -13.70482 -13.50732 -13.25904 -13.18463 -13.13650 -12.92036 -12.87562 -12.63639 -12.34922 -12.05551 -11.95165 -11.75374 -11.72469 -11.14639 -10.92281 -10.87518 -10.58780 -10.30619 -10.10701 -9.56470 -8.68314 -8.36084 -6.14234 0.28601 1.20626 1.32383 1.41942 1.44720 1.54273 1.57355 2.04347 2.11431 2.26048 2.83403 2.97709 3.24122 3.52332 3.56716 3.64910 3.74829 3.84541 4.04078 4.14985 4.20091 4.31915 4.36931 4.43636 4.63270 4.64460 4.73456 4.86007 4.97709 5.04918 5.09838 5.15535 5.36506 5.38986 5.39924 5.50346 5.72847 5.89325 6.17518 6.23905 6.24775 6.76714 6.97947 7.04831 7.16291 8.72997 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.004104 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.860329 B = 6821.759980 C = 9639.542844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.137 3.863 3 H 0.098 0.902 4 C -0.120 4.120 5 C -0.116 4.116 6 C 0.134 3.866 7 H 0.075 0.925 8 N -0.678 5.678 9 C 0.502 3.498 10 O -0.541 6.541 11 C 0.519 3.481 12 N -0.804 5.804 13 O -0.546 6.546 14 C 0.094 3.906 15 N -0.602 5.602 16 C 0.534 3.466 17 O -0.540 6.540 18 C -0.127 4.127 19 S -0.141 6.141 20 C -0.550 4.550 21 H 0.077 0.923 22 C 0.017 3.983 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.275 1.275 26 H -0.262 1.262 27 H -0.263 1.263 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.426 0.574 36 H 0.421 0.579 37 H 0.423 0.577 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.528 4.621 19.001 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.036 3.964 3 H 0.116 0.884 4 C -0.159 4.159 5 C -0.154 4.154 6 C 0.028 3.972 7 H 0.093 0.907 8 N -0.332 5.332 9 C 0.282 3.718 10 O -0.418 6.418 11 C 0.297 3.703 12 N -0.370 5.370 13 O -0.424 6.424 14 C -0.030 4.030 15 N -0.337 5.337 16 C 0.321 3.679 17 O -0.418 6.418 18 C -0.278 4.278 19 S 0.087 5.913 20 C -0.697 4.697 21 H 0.095 0.905 22 C -0.188 4.188 23 N -0.546 5.546 24 Si 0.817 3.183 25 H -0.200 1.200 26 H -0.186 1.186 27 H -0.188 1.188 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.265 0.735 36 H 0.253 0.747 37 H 0.258 0.742 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.400 4.791 19.178 25.685 hybrid contribution 1.785 -0.921 -1.532 2.526 sum 18.185 3.870 17.646 25.633 Atomic orbital electron populations 1.22044 0.93952 1.02071 1.00794 1.21703 0.94934 0.96272 0.83514 0.88401 1.22031 0.94903 1.01289 0.97675 1.21809 0.96071 1.01589 0.95951 1.21379 0.78919 1.00635 0.96217 0.90681 1.45622 1.07635 1.26719 1.53213 1.20402 0.89259 0.82461 0.79683 1.90861 1.63742 1.42357 1.44850 1.19910 0.88380 0.82526 0.79458 1.43483 1.12917 1.26688 1.53919 1.90809 1.63453 1.42180 1.45911 1.22221 0.79852 1.01893 0.99027 1.48010 1.06861 1.58275 1.20565 1.19967 0.86246 0.77445 0.84201 1.90763 1.16648 1.55174 1.79204 1.23427 1.03469 1.03592 0.97357 1.85398 1.10214 1.79963 1.15756 1.23135 0.95208 1.47486 1.03898 0.90529 1.26091 0.95967 0.95370 1.01376 1.70162 1.07981 1.44909 1.31548 0.85043 0.77921 0.78835 0.76455 1.20016 1.18642 1.18779 0.93860 0.91039 0.93827 0.92618 0.86924 0.88686 0.88138 0.73504 0.74688 0.74193 0.90907 0.88268 0.88953 0.88352 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 7.60 71.98 0.55 -2.96 16 2 C 0.14 2.83 3.51 45.12 0.16 2.99 16 3 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -1.66 5.40 30.82 0.17 -1.50 16 5 C -0.12 -1.18 5.35 30.62 0.16 -1.02 16 6 C 0.13 2.27 2.60 45.07 0.12 2.39 16 7 H 0.07 1.72 7.58 -2.38 -0.02 1.70 16 8 N -0.68 -10.07 5.08 -443.50 -2.25 -12.32 16 9 C 0.50 9.88 7.86 87.27 0.69 10.57 16 10 O -0.54 -14.47 16.14 -3.25 -0.05 -14.52 16 11 C 0.52 8.93 8.16 87.27 0.71 9.64 16 12 N -0.80 -9.10 8.87 -174.50 -1.55 -10.65 16 13 O -0.55 -11.34 17.31 -3.23 -0.06 -11.39 16 14 C 0.09 2.01 5.90 86.36 0.51 2.52 16 15 N -0.60 -16.25 2.97 -794.25 -2.36 -18.61 16 16 C 0.53 20.65 7.62 87.66 0.67 21.32 16 17 O -0.54 -24.49 11.26 -3.03 -0.03 -24.52 16 18 C -0.13 -5.49 4.56 71.24 0.32 -5.17 16 19 S -0.14 -8.06 20.57 -56.49 -1.16 -9.22 16 20 C -0.55 -32.49 9.50 67.96 0.65 -31.85 16 21 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 22 C 0.02 0.99 5.49 84.86 0.47 1.45 16 23 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 24 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.04 1.43 6.73 -2.39 -0.02 1.41 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.43 6.77 -2.38 -0.02 1.42 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.43 4.37 8.08 -92.70 -0.75 3.62 16 36 H 0.42 4.35 8.30 -92.71 -0.77 3.58 16 37 H 0.42 2.87 8.93 -92.71 -0.83 2.04 16 38 H 0.07 1.93 5.96 -2.39 -0.01 1.91 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 3.90 7.48 -2.40 -0.02 3.88 16 41 H 0.10 3.95 8.11 -2.39 -0.02 3.93 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -83.13 360.89 -1.24 -84.37 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -1.26 Total: 18.35 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.17 Total: 8.40 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -5.87 Total: -97.97 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.14 Total: -50.44 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -83.13 -1.24 -84.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488695313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.024 kcal (2) G-P(sol) polarization free energy of solvation -83.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.47 seconds