Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86795 * 119.99699 * 2 1 4 4 H 1.48505 * 109.47188 * 240.00298 * 3 2 1 5 5 H 1.48502 * 109.47713 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47291 * 120.00246 * 3 2 1 7 7 C 1.38795 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00095 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99612 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46687 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00110 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99883 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00181 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46680 * 35.00448 * 14 13 11 16 16 C 1.53001 * 109.46951 * 155.00373 * 14 13 11 17 17 N 1.46493 * 109.47084 * 304.99803 * 16 14 13 18 18 C 1.34784 * 119.99864 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99649 * 359.72839 * 18 17 16 20 20 C 1.50694 * 119.99988 * 179.72721 * 18 17 16 21 21 C 1.50698 * 109.47166 * 179.97438 * 20 18 17 22 22 N 1.34774 * 120.00337 * 179.97438 * 21 20 18 23 23 O 1.21280 * 119.99901 * 0.02562 * 21 20 18 24 24 C 1.52996 * 109.47008 * 275.00503 * 14 13 11 25 25 C 1.52999 * 117.49977 * 128.74414 * 24 14 13 26 26 C 1.53001 * 117.50112 * 60.08402 * 24 14 13 27 27 H 0.96995 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47354 * 60.00108 * 10 9 7 29 29 H 1.09001 * 109.47504 * 300.00021 * 10 9 7 30 30 H 0.97003 * 120.00243 * 0.02562 * 13 11 10 31 31 H 1.09007 * 109.46593 * 185.00060 * 16 14 13 32 32 H 1.09006 * 109.47216 * 65.00519 * 16 14 13 33 33 H 0.97000 * 120.00740 * 359.72857 * 17 16 14 34 34 H 1.08998 * 109.47224 * 299.99701 * 20 18 17 35 35 H 1.09002 * 109.47054 * 60.00213 * 20 18 17 36 36 H 0.96997 * 120.00043 * 0.02562 * 22 21 20 37 37 H 0.97002 * 120.00150 * 179.97438 * 22 21 20 38 38 H 1.09003 * 115.55008 * 274.41783 * 24 14 13 39 39 H 1.09001 * 117.50021 * 0.02562 * 25 24 14 40 40 H 1.09005 * 117.49919 * 145.01421 * 25 24 14 41 41 H 1.08998 * 117.50341 * 214.97622 * 26 24 14 42 42 H 1.08994 * 117.49904 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7151 -0.0030 15 1 1.4150 -7.7596 -0.5927 16 6 3.3763 -8.6506 -0.6131 17 7 3.7486 -8.1651 -1.9441 18 6 4.6607 -8.8359 -2.6753 19 8 5.1770 -9.8386 -2.2292 20 6 5.0391 -8.3399 -4.0471 21 6 6.0701 -9.2606 -4.6474 22 7 6.5593 -9.0131 -5.8786 23 8 6.4589 -10.2249 -4.0230 24 6 2.0336 -8.1497 1.4336 25 6 0.6514 -8.7389 1.7220 26 6 1.0043 -7.3350 2.2197 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7313 0.8894 29 1 3.1247 -3.7313 -0.8905 30 1 3.8011 -6.1834 -0.0015 31 1 2.9610 -9.6551 -0.6956 32 1 4.2595 -8.6740 0.0254 33 1 3.3354 -7.3634 -2.3011 34 1 4.1543 -8.3206 -4.6833 35 1 5.4524 -7.3343 -3.9687 36 1 6.2481 -8.2421 -6.3782 37 1 7.2232 -9.6056 -6.2649 38 1 2.8801 -8.5581 1.9857 39 1 -0.0462 -8.8174 0.8882 40 1 0.5885 -9.5349 2.4640 41 1 1.1733 -7.2080 3.2889 42 1 0.5391 -6.4893 1.7136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493505653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = -87.725608 kcal Electronic energy + Delta-G solvation = -25200.527608 eV Core-core repulsion = 21307.648193 eV Total energy + Delta-G solvation = -3892.879415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 12.12 seconds Orbital eigenvalues (eV) -40.57945 -39.85222 -38.67414 -37.21951 -35.29833 -34.01011 -33.47539 -32.48053 -31.23884 -29.86043 -28.06864 -25.53512 -23.83355 -22.25711 -21.67959 -21.11491 -20.42705 -20.12381 -18.13188 -17.76638 -17.54596 -16.72662 -16.58193 -16.21150 -16.04678 -15.69236 -15.45155 -14.85504 -14.78114 -14.65633 -14.04003 -13.98812 -13.72392 -13.50494 -13.23232 -13.06274 -12.61856 -12.29269 -12.17964 -12.02664 -11.68506 -11.26200 -11.09461 -11.07917 -10.82404 -10.52082 -10.36505 -10.23587 -9.99830 -9.87206 -9.71667 -9.48711 -9.29082 -9.11303 -8.94410 -8.30879 -6.56038 -6.27003 -3.97969 2.29172 2.49324 2.60230 2.88628 2.97679 3.19267 3.22905 3.25506 3.35978 3.56728 3.95967 4.15423 4.22827 4.37617 4.60048 4.76864 4.79770 4.89954 4.94922 5.03224 5.08362 5.12332 5.16950 5.29877 5.44345 5.57112 5.70424 5.75502 5.80758 6.00876 6.06692 6.13601 6.15772 6.43123 6.43536 6.56778 6.93483 7.21846 7.53949 7.60053 7.91816 8.07421 8.29549 8.50824 9.18515 10.80262 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.002812 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.400825 B = 9953.407585 C =12234.191459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.155 4.155 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.733 5.733 14 C 0.167 3.833 15 H 0.096 0.904 16 C 0.119 3.881 17 N -0.732 5.732 18 C 0.512 3.488 19 O -0.497 6.497 20 C -0.169 4.169 21 C 0.516 3.484 22 N -0.860 5.860 23 O -0.499 6.499 24 C -0.173 4.173 25 C -0.171 4.171 26 C -0.175 4.175 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.399 0.601 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.400 0.600 37 H 0.403 0.597 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 -15.977 -7.608 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.387 6.387 13 N -0.387 5.387 14 C 0.062 3.938 15 H 0.114 0.886 16 C -0.005 4.005 17 N -0.387 5.387 18 C 0.296 3.704 19 O -0.369 6.369 20 C -0.212 4.212 21 C 0.298 3.702 22 N -0.426 5.426 23 O -0.371 6.371 24 C -0.193 4.193 25 C -0.209 4.209 26 C -0.212 4.212 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.233 0.767 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.238 0.762 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.228 0.772 37 H 0.234 0.766 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.735 -17.550 -6.703 20.316 hybrid contribution 2.358 2.048 -0.563 3.174 sum 10.093 -15.502 -7.265 19.873 Atomic orbital electron populations 1.70002 1.05941 1.27624 1.46701 1.24984 0.95021 0.99022 0.94488 0.86235 0.79253 0.81267 0.78813 1.19944 1.20805 1.19934 1.22820 0.94852 0.91689 1.59170 0.91011 1.85378 1.04702 0.96267 1.96732 1.23545 1.06674 0.95400 1.04910 1.20298 0.86568 0.86201 0.74689 1.90643 1.15329 1.85410 1.47282 1.46136 1.10022 1.04962 1.77619 1.20681 0.97446 0.81059 0.94639 0.88611 1.21590 0.98055 0.97839 0.82997 1.45967 1.43902 1.30692 1.18131 1.19926 0.79748 0.84273 0.86453 1.90874 1.51353 1.23761 1.70960 1.21604 1.01228 1.01812 0.96590 1.19987 0.82561 0.86018 0.81615 1.43867 1.47243 1.32868 1.18648 1.90916 1.58111 1.28308 1.59749 1.22541 0.93864 1.06478 0.96441 1.22933 0.97017 0.97304 1.03623 1.23335 1.01792 0.96206 0.99842 0.92092 0.89225 0.89330 0.76725 0.89862 0.90748 0.76161 0.85836 0.85758 0.77159 0.76647 0.87768 0.88680 0.89055 0.89380 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.38 13.22 55.49 0.73 -24.64 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.66 9.50 30.94 0.29 -14.36 16 8 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 10 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 11 C 0.54 8.54 7.18 -10.98 -0.08 8.46 16 12 O -0.51 -9.95 12.89 5.56 0.07 -9.88 16 13 N -0.73 -8.12 4.50 -53.80 -0.24 -8.36 16 14 C 0.17 1.70 2.43 -67.93 -0.17 1.54 16 15 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16 16 C 0.12 1.08 5.21 -4.04 -0.02 1.06 16 17 N -0.73 -6.08 5.39 -60.29 -0.32 -6.41 16 18 C 0.51 5.27 7.82 -10.98 -0.09 5.18 16 19 O -0.50 -7.67 14.18 -18.96 -0.27 -7.94 16 20 C -0.17 -1.05 6.18 -29.04 -0.18 -1.23 16 21 C 0.52 4.67 8.09 -10.99 -0.09 4.58 16 22 N -0.86 -4.00 8.87 31.22 0.28 -3.72 16 23 O -0.50 -7.47 15.02 -18.96 -0.28 -7.76 16 24 C -0.17 -1.84 5.36 -90.62 -0.49 -2.32 16 25 C -0.17 -1.83 10.18 -26.69 -0.27 -2.11 16 26 C -0.17 -2.27 9.74 -26.69 -0.26 -2.53 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 29 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 30 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 2.78 8.14 -40.82 -0.33 2.45 16 34 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 0.53 8.83 -40.82 -0.36 0.17 16 37 H 0.40 1.69 8.93 -40.82 -0.36 1.33 16 38 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 39 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.12 2.05 5.02 -51.93 -0.26 1.79 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -38.69 373.14 -8.68 -47.37 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.82 Total: 6.04 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.22 Total: -2.37 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.44 Total: -43.13 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.48 Total: -25.58 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.69 -8.68 -47.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493505653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.355 kcal (2) G-P(sol) polarization free energy of solvation -38.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.12 seconds