Wall clock time and date at job start Tue Mar 31 2020 07:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47388 * 2 1 4 4 C 1.52995 * 109.47498 * 240.00263 * 2 1 3 5 5 N 1.46499 * 109.47595 * 184.99821 * 4 2 1 6 6 C 1.34778 * 120.00278 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00123 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00074 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99873 * 14 12 10 18 18 N 1.46499 * 109.47265 * 120.00032 * 2 1 3 19 19 C 1.34780 * 119.99728 * 275.00033 * 18 2 1 20 20 O 1.21276 * 120.00310 * 359.97438 * 19 18 2 21 21 C 1.50704 * 119.99461 * 179.97438 * 19 18 2 22 22 H 1.08998 * 110.43643 * 61.09063 * 21 19 18 23 23 C 1.54633 * 110.48311 * 183.77343 * 21 19 18 24 24 C 1.54479 * 101.76621 * 143.47809 * 23 21 19 25 25 N 1.46766 * 105.47127 * 334.58287 * 24 23 21 26 26 C 1.34423 * 111.30138 * 17.01770 * 25 24 23 27 27 O 1.21276 * 124.94305 * 179.55820 * 26 25 24 28 28 H 1.08995 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46743 * 299.99973 * 1 2 3 30 30 H 1.08998 * 109.47216 * 59.99958 * 1 2 3 31 31 H 1.09008 * 109.47218 * 64.99652 * 4 2 1 32 32 H 1.09007 * 109.47175 * 305.00002 * 4 2 1 33 33 H 0.97000 * 119.99972 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 0.96999 * 119.99994 * 95.00176 * 18 2 1 38 38 H 1.09004 * 110.96642 * 261.59277 * 23 21 19 39 39 H 1.08991 * 110.96938 * 25.35621 * 23 21 19 40 40 H 1.08994 * 110.24855 * 215.58405 * 24 23 21 41 41 H 1.09000 * 110.24925 * 93.58070 * 24 23 21 42 42 H 0.97003 * 124.35217 * 196.99738 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1731 -1.4290 -2.1907 7 8 3.5700 -1.8840 -3.1395 8 6 5.6749 -1.5376 -2.1301 9 16 6.2783 -2.3906 -3.6081 10 6 8.0100 -2.3777 -3.2833 11 1 8.3863 -1.9252 -2.3776 12 6 8.8902 -2.9545 -4.1884 13 7 8.4316 -3.5063 -5.2919 14 14 10.7255 -2.9476 -3.8403 15 1 11.0905 -4.1725 -3.0843 16 1 11.4726 -2.9168 -5.1233 17 1 11.0724 -1.7480 -3.0366 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0182 2.3571 20 8 1.8590 1.1586 2.4115 21 6 2.6489 -0.7288 3.5877 22 1 3.6560 -1.1115 3.4221 23 6 2.6211 0.2191 4.8091 24 6 2.2168 -0.7447 5.9467 25 7 1.4827 -1.8350 5.2937 26 6 1.7114 -1.8531 3.9692 27 8 1.2359 -2.6546 3.1931 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1582 -2.1370 32 1 1.6054 -1.7198 -1.2952 33 1 3.9825 -0.4620 -0.4319 34 1 5.9630 -2.1004 -1.2423 35 1 6.1098 -0.5392 -2.0843 36 1 9.0468 -3.9091 -5.9245 37 1 2.2491 -1.6317 1.1526 38 1 3.6064 0.6477 4.9927 39 1 1.8748 1.0025 4.6779 40 1 1.5743 -0.2337 6.6636 41 1 3.1048 -1.1334 6.4452 42 1 0.9067 -2.4621 5.7583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494604168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:53 Heat of formation + Delta-G solvation = -114.726464 kcal Electronic energy + Delta-G solvation = -25356.896275 eV Core-core repulsion = 21462.846015 eV Total energy + Delta-G solvation = -3894.050260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37260 -39.68900 -38.94905 -37.02447 -36.33449 -33.68213 -32.43114 -32.37088 -31.07366 -29.38146 -28.31935 -25.99757 -25.37718 -23.41155 -22.17892 -21.23144 -20.40063 -20.29749 -18.12219 -17.84608 -17.74933 -16.87907 -16.71546 -16.23970 -15.84588 -15.22483 -14.97016 -14.90402 -14.80540 -14.32268 -14.20539 -14.05778 -13.69228 -13.51350 -13.23837 -13.02899 -12.88852 -12.79930 -12.60922 -12.33392 -12.14288 -11.79230 -11.70636 -11.25083 -11.06560 -11.02713 -10.76451 -10.49836 -10.22868 -9.82262 -9.68845 -9.49374 -9.36774 -9.07449 -8.93527 -8.23877 -6.50166 -6.21847 -3.92387 1.87575 2.23245 2.68930 2.92317 3.03126 3.08824 3.22099 3.27728 3.31774 3.69478 3.71059 3.83174 4.20141 4.25980 4.40696 4.42987 4.62608 4.79335 4.86902 4.97133 5.01568 5.13266 5.14840 5.29369 5.39478 5.44102 5.52801 5.55024 5.69099 5.78680 5.88023 5.96183 6.12784 6.15786 6.17932 6.40272 6.55513 7.15272 7.59212 7.64916 7.66220 7.82908 8.34934 8.58630 9.23433 10.85578 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.002461 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.856827 B =11373.637450 C =12516.321118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.713 5.713 19 C 0.534 3.466 20 O -0.533 6.533 21 C -0.154 4.154 22 H 0.139 0.861 23 C -0.117 4.117 24 C 0.098 3.902 25 N -0.728 5.728 26 C 0.529 3.471 27 O -0.517 6.517 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.411 0.589 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.114 8.076 24.722 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.365 5.365 19 C 0.319 3.681 20 O -0.410 6.410 21 C -0.178 4.178 22 H 0.157 0.843 23 C -0.155 4.155 24 C -0.026 4.026 25 N -0.384 5.384 26 C 0.313 3.687 27 O -0.392 6.392 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.479 7.719 22.491 28.373 hybrid contribution 2.055 -0.082 1.992 2.864 sum -13.423 7.637 24.483 28.947 Atomic orbital electron populations 1.22090 0.93956 1.02920 1.02888 1.21288 0.95125 0.97687 0.83226 0.88526 1.21621 0.81119 1.01502 0.96936 1.45980 1.06788 1.62055 1.24636 1.20316 0.89519 0.76743 0.81626 1.90710 1.69849 1.45913 1.32461 1.23528 0.93510 1.05688 1.07674 1.85410 1.04586 1.73097 1.20189 1.22863 0.91553 1.44184 1.09769 0.90946 1.24999 0.99599 0.94555 0.94466 1.70022 1.35433 1.35365 1.09446 0.86164 0.82833 0.78590 0.77884 1.20282 1.20752 1.19697 1.46112 1.66414 1.14786 1.09201 1.19718 0.77601 0.86890 0.83923 1.90716 1.50055 1.15595 1.84648 1.22210 1.02430 0.97247 0.95958 0.84319 1.22616 1.05157 0.97241 0.90496 1.22190 0.96932 0.87617 0.95902 1.46116 1.49604 1.34232 1.08471 1.20312 0.80908 0.84683 0.82784 1.90815 1.52832 1.41486 1.54081 0.91805 0.91790 0.91020 0.89849 0.90759 0.76837 0.89266 0.89225 0.92178 0.75291 0.88298 0.88067 0.89675 0.90449 0.74628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.13 1.25 2.73 -67.93 -0.19 1.07 16 3 H 0.10 0.98 7.58 -51.92 -0.39 0.58 16 4 C 0.11 1.28 5.23 -4.04 -0.02 1.26 16 5 N -0.74 -9.65 5.39 -60.29 -0.32 -9.98 16 6 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 7 O -0.52 -11.60 15.86 5.56 0.09 -11.51 16 8 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 14 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 N -0.71 -6.69 4.22 -53.81 -0.23 -6.91 16 19 C 0.53 5.15 7.13 -10.98 -0.08 5.07 16 20 O -0.53 -6.49 15.19 5.56 0.08 -6.41 16 21 C -0.15 -1.05 3.33 -91.78 -0.31 -1.36 16 22 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 23 C -0.12 -0.54 6.45 -25.10 -0.16 -0.70 16 24 C 0.10 0.28 7.78 -3.12 -0.02 0.26 16 25 N -0.73 -3.89 6.24 -59.20 -0.37 -4.26 16 26 C 0.53 4.50 7.84 -10.86 -0.09 4.41 16 27 O -0.52 -6.31 16.85 5.56 0.09 -6.21 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 33 H 0.40 4.28 8.14 -40.82 -0.33 3.95 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.41 3.91 7.81 -40.82 -0.32 3.59 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.63 7.05 -51.93 -0.37 0.26 16 40 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.41 1.67 8.96 -40.82 -0.37 1.30 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -37.83 372.61 -7.69 -45.52 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.97 Total: 4.21 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.18 Total: 2.87 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.19 Total: -46.58 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.27 Total: -24.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.83 -7.69 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494604168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.209 kcal (2) G-P(sol) polarization free energy of solvation -37.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds